Wall clock time and date at job start Tue Mar 31 2020 14:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35709 * 117.00038 * 2 1 4 4 C 1.41929 * 126.87830 * 180.30042 * 3 2 1 5 5 C 1.35272 * 103.95829 * 180.10989 * 4 3 2 6 6 C 1.50700 * 126.70884 * 179.87320 * 5 4 3 7 7 C 1.53005 * 109.46891 * 89.71655 * 6 5 4 8 8 C 1.50700 * 109.46891 * 179.97438 * 7 6 5 9 9 O 1.21278 * 120.00484 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99804 * 179.97438 * 8 7 6 11 11 C 1.47425 * 125.64906 * 180.02562 * 10 8 7 12 12 C 1.54915 * 104.83334 * 204.09456 * 11 10 8 13 13 H 1.09001 * 111.00387 * 81.05917 * 12 11 10 14 14 C 1.52992 * 111.00370 * 204.91773 * 12 11 10 15 15 C 1.55165 * 101.57980 * 322.99105 * 12 11 10 16 16 H 1.08993 * 110.71917 * 277.13865 * 15 12 11 17 17 N 1.46496 * 110.71696 * 153.86336 * 15 12 11 18 18 C 1.36943 * 119.99804 * 160.02391 * 17 15 12 19 19 H 1.07998 * 119.99804 * 359.97438 * 18 17 15 20 20 C 1.38807 * 119.99940 * 180.02562 * 18 17 15 21 21 N 1.31617 * 120.00068 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99909 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47219 * 59.99520 * 22 20 18 24 24 H 1.48501 * 109.47157 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.46975 * 299.99354 * 22 20 18 26 26 C 1.47022 * 125.64758 * 359.97438 * 10 8 7 27 27 O 1.34082 * 106.58163 * 359.61746 * 5 4 3 28 28 N 1.20912 * 111.71922 * 0.25647 * 27 5 4 29 29 H 1.09003 * 109.46822 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47361 * 300.00280 * 1 2 3 31 31 H 1.09000 * 109.46901 * 60.00883 * 1 2 3 32 32 H 1.07998 * 128.02416 * 0.02562 * 4 3 2 33 33 H 1.09002 * 109.47258 * 329.71455 * 6 5 4 34 34 H 1.08999 * 109.47362 * 209.71376 * 6 5 4 35 35 H 1.09002 * 109.47333 * 59.99845 * 7 6 5 36 36 H 1.08999 * 109.46889 * 300.00010 * 7 6 5 37 37 H 1.08997 * 110.36855 * 322.93198 * 11 10 8 38 38 H 1.08999 * 110.36490 * 85.14513 * 11 10 8 39 39 H 1.09006 * 109.47371 * 172.19356 * 14 12 11 40 40 H 1.09002 * 109.47302 * 292.19133 * 14 12 11 41 41 H 1.08999 * 109.47292 * 52.19384 * 14 12 11 42 42 H 0.96996 * 120.00232 * 340.02486 * 17 15 12 43 43 H 0.97004 * 119.99895 * 180.02562 * 21 20 18 44 44 H 1.08997 * 109.88723 * 59.55959 * 26 10 8 45 45 H 1.09000 * 110.01436 * 298.46511 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 3.4434 1.4527 -0.0060 5 6 3.5396 2.8019 -0.0007 6 6 4.8088 3.6145 -0.0009 7 6 5.2381 3.8894 -1.4435 8 6 6.5070 4.7025 -1.4437 9 8 7.0174 5.0303 -0.3936 10 7 7.0745 5.0654 -2.6110 11 6 8.3101 5.8564 -2.7564 12 6 8.1996 6.5110 -4.1561 13 1 7.5708 7.4007 -4.1228 14 6 9.5838 6.8409 -4.7180 15 6 7.5215 5.3812 -4.9756 16 1 8.2605 4.6582 -5.3204 17 7 6.7727 5.9381 -6.1049 18 6 6.4476 5.1415 -7.1703 19 1 6.7435 4.1029 -7.1780 20 6 5.7386 5.6692 -8.2406 21 7 5.3784 6.9351 -8.2313 22 14 5.2944 4.5823 -9.6935 23 1 4.4514 3.4523 -9.2269 24 1 4.5426 5.3791 -10.6962 25 1 6.5356 4.0515 -10.3123 26 6 6.5646 4.7371 -3.9503 27 8 2.2851 3.2751 -0.0010 28 7 1.4700 2.3819 -0.0007 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 4.2447 0.7286 -0.0118 33 1 5.5948 3.0609 0.5129 34 1 4.6351 4.5600 0.5129 35 1 4.4522 4.4429 -1.9573 36 1 5.4119 2.9439 -1.9573 37 1 8.3635 6.6222 -1.9827 38 1 9.1842 5.2070 -2.7074 39 1 9.4870 7.1697 -5.7528 40 1 10.0366 7.6357 -4.1252 41 1 10.2140 5.9526 -4.6765 42 1 6.5073 6.8710 -6.0981 43 1 4.8826 7.3038 -8.9792 44 1 5.5607 5.1429 -4.0746 45 1 6.5469 3.6559 -4.0881 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054705895.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:16 Heat of formation + Delta-G solvation = -19.622732 kcal Electronic energy + Delta-G solvation = -26910.972696 eV Core-core repulsion = 22931.894197 eV Total energy + Delta-G solvation = -3979.078499 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -45.96677 -41.13449 -39.86313 -39.02483 -35.87554 -35.68364 -34.00583 -33.79171 -32.49491 -31.43245 -29.08427 -28.62021 -27.76533 -25.93859 -25.27993 -24.44702 -22.91942 -22.09339 -21.34025 -20.13060 -19.07092 -19.01893 -18.74853 -17.93488 -17.75772 -17.31585 -16.67275 -16.60460 -16.44520 -16.09654 -15.70142 -15.31103 -15.05432 -14.78877 -14.56760 -14.39255 -14.06773 -13.89471 -13.54749 -13.41745 -13.16839 -13.11404 -12.98007 -12.86939 -12.81993 -12.77470 -12.45652 -12.23758 -12.11254 -11.99911 -11.93669 -11.64869 -11.37320 -11.04223 -10.86538 -10.53429 -10.31416 -9.60422 -9.02976 -7.91943 -5.21267 0.34743 1.19912 1.51887 1.52877 1.58817 1.62002 1.73881 1.94426 2.22834 2.59035 3.15641 3.39191 3.41899 3.73235 3.83290 3.87480 3.90702 3.93634 4.01061 4.18291 4.21071 4.23146 4.27632 4.39489 4.43157 4.51202 4.57126 4.59176 4.66376 4.75011 4.82340 4.90407 4.95349 4.96730 5.05877 5.15175 5.19173 5.29002 5.36358 5.52298 5.58598 5.91927 6.28830 6.55753 7.13140 7.17027 7.36750 8.09457 8.32432 9.30794 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.009713 B = 0.003034 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2882.064628 B = 9227.770552 C =11617.056076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.295 6.295 3 C 0.194 3.806 4 C -0.231 4.231 5 C 0.008 3.992 6 C -0.015 4.015 7 C -0.130 4.130 8 C 0.529 3.471 9 O -0.578 6.578 10 N -0.613 5.613 11 C 0.117 3.883 12 C -0.105 4.105 13 H 0.069 0.931 14 C -0.128 4.128 15 C 0.169 3.831 16 H 0.070 0.930 17 N -0.723 5.723 18 C -0.239 4.239 19 H 0.081 0.919 20 C -0.070 4.070 21 N -0.968 5.968 22 Si 0.966 3.034 23 H -0.279 1.279 24 H -0.301 1.301 25 H -0.278 1.278 26 C 0.085 3.915 27 O 0.086 5.914 28 N -0.433 5.433 29 H 0.135 0.865 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.204 0.796 33 H 0.123 0.877 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.116 0.884 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.045 0.955 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.375 0.625 43 H 0.250 0.750 44 H 0.058 0.942 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.369 -10.774 17.208 20.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.202 6.202 3 C -0.003 4.003 4 C -0.252 4.252 5 C -0.056 4.056 6 C -0.053 4.053 7 C -0.170 4.170 8 C 0.320 3.680 9 O -0.459 6.459 10 N -0.346 5.346 11 C -0.006 4.006 12 C -0.125 4.125 13 H 0.087 0.913 14 C -0.186 4.186 15 C 0.059 3.941 16 H 0.088 0.912 17 N -0.362 5.362 18 C -0.370 4.370 19 H 0.099 0.901 20 C -0.263 4.263 21 N -0.618 5.618 22 Si 0.796 3.204 23 H -0.205 1.205 24 H -0.228 1.228 25 H -0.204 1.204 26 C -0.041 4.041 27 O 0.027 5.973 28 N -0.162 5.162 29 H 0.153 0.847 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.221 0.779 33 H 0.141 0.859 34 H 0.117 0.883 35 H 0.118 0.882 36 H 0.135 0.865 37 H 0.093 0.907 38 H 0.101 0.899 39 H 0.064 0.936 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.207 0.793 43 H 0.059 0.941 44 H 0.076 0.924 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.318 -10.663 17.682 20.691 hybrid contribution -0.445 -0.285 -1.192 1.304 sum -1.763 -10.948 16.490 19.872 Atomic orbital electron populations 1.23295 0.75454 1.05975 1.02092 1.86179 1.24073 1.20606 1.89310 1.22402 0.91920 0.85826 1.00168 1.22167 0.94144 0.96063 1.12820 1.24526 0.87886 0.93446 0.99695 1.19918 0.88291 1.00533 0.96600 1.21623 0.94869 1.02033 0.98488 1.20518 0.85945 0.79815 0.81749 1.90675 1.65925 1.58033 1.31285 1.48571 1.26668 1.53332 1.06037 1.22285 0.87005 0.94712 0.96549 1.22531 0.98420 0.97812 0.93734 0.91252 1.21567 0.94243 1.02259 1.00524 1.21452 0.91781 0.94531 0.86385 0.91206 1.42478 1.65462 1.10608 1.17611 1.19581 1.27549 0.93827 0.96071 0.90067 1.25479 1.02107 0.97237 1.01459 1.69798 1.45235 1.13840 1.32921 0.85324 0.77858 0.77818 0.79420 1.20466 1.22803 1.20375 1.22992 0.99235 1.00695 0.81215 1.84779 1.13050 1.30148 1.69281 1.74129 1.16480 0.97276 1.28314 0.84670 0.92331 0.92743 0.77896 0.85910 0.88322 0.88164 0.86540 0.90731 0.89927 0.93617 0.91054 0.91367 0.79294 0.94145 0.92398 0.90700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.73 113.37 1.22 1.62 16 2 O -0.29 -6.36 10.57 -90.30 -0.95 -7.32 16 3 C 0.19 4.60 8.01 85.79 0.69 5.28 16 4 C -0.23 -4.37 11.11 22.50 0.25 -4.12 16 5 C 0.01 0.15 6.73 25.00 0.17 0.32 16 6 C -0.02 -0.26 5.07 29.85 0.15 -0.10 16 7 C -0.13 -2.54 4.87 29.85 0.15 -2.39 16 8 C 0.53 13.78 7.85 87.66 0.69 14.47 16 9 O -0.58 -17.84 16.24 -3.02 -0.05 -17.89 16 10 N -0.61 -16.62 3.33 -811.79 -2.70 -19.32 16 11 C 0.12 2.98 6.37 86.86 0.55 3.54 16 12 C -0.11 -2.99 3.25 -9.40 -0.03 -3.02 16 13 H 0.07 2.19 8.00 -2.39 -0.02 2.17 16 14 C -0.13 -3.20 9.31 71.98 0.67 -2.53 16 15 C 0.17 5.71 3.06 46.18 0.14 5.85 16 16 H 0.07 2.34 8.02 -2.39 -0.02 2.32 16 17 N -0.72 -32.58 5.18 -317.33 -1.64 -34.23 16 18 C -0.24 -12.04 9.98 84.03 0.84 -11.20 16 19 H 0.08 3.87 7.83 -2.91 -0.02 3.85 16 20 C -0.07 -3.79 5.50 84.86 0.47 -3.32 16 21 N -0.97 -56.50 13.06 21.65 0.28 -56.22 16 22 Si 0.97 43.79 29.55 68.60 2.03 45.82 16 23 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 24 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 25 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 26 C 0.08 2.53 6.24 86.73 0.54 3.07 16 27 O 0.09 2.12 11.19 71.25 0.80 2.91 16 28 N -0.43 -11.36 11.54 -172.61 -1.99 -13.35 16 29 H 0.14 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.20 2.63 8.06 -2.91 -0.02 2.61 16 33 H 0.12 1.77 8.10 -2.39 -0.02 1.75 16 34 H 0.10 1.74 8.10 -2.39 -0.02 1.72 16 35 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.07 1.92 8.04 -2.39 -0.02 1.90 16 38 H 0.08 1.87 7.99 -2.39 -0.02 1.85 16 39 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 40 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.07 1.50 8.08 -2.39 -0.02 1.48 16 42 H 0.37 18.65 7.71 -92.71 -0.72 17.94 16 43 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 44 H 0.06 1.96 8.03 -2.39 -0.02 1.94 16 45 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -66.24 381.44 2.54 -63.70 By element: Atomic # 1 Polarization: 28.15 SS G_CDS: 0.28 Total: 28.43 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: 6.49 Total: 7.45 kcal Atomic # 7 Polarization: -117.06 SS G_CDS: -6.05 Total: -123.11 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: -0.21 Total: -22.29 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -66.24 2.54 -63.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054705895.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.080 kcal (2) G-P(sol) polarization free energy of solvation -66.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds