Wall clock time and date at job start Tue Mar 31 2020 14:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42902 * 109.47141 * 2 1 4 4 C 1.35358 * 117.00003 * 180.02562 * 3 2 1 5 5 N 1.30544 * 125.44647 * 180.33595 * 4 3 2 6 6 C 1.36328 * 108.38201 * 180.12440 * 5 4 3 7 7 C 1.47373 * 126.41127 * 179.82557 * 6 5 4 8 8 O 1.21626 * 119.99755 * 179.68737 * 7 6 5 9 9 N 1.34771 * 120.00002 * 359.69447 * 7 6 5 10 10 C 1.46503 * 120.00038 * 180.02562 * 9 7 6 11 11 H 1.08998 * 109.49647 * 34.93464 * 10 9 7 12 12 C 1.53044 * 109.49748 * 154.99407 * 10 9 7 13 13 C 1.53044 * 109.53536 * 58.58986 * 12 10 9 14 14 C 1.53191 * 109.31282 * 61.36383 * 13 12 10 15 15 H 1.08999 * 109.70834 * 65.22509 * 14 13 12 16 16 C 1.53000 * 109.58261 * 185.57801 * 14 13 12 17 17 N 1.46925 * 108.77514 * 305.35896 * 14 13 12 18 18 C 1.36935 * 120.63365 * 233.58727 * 17 14 13 19 19 H 1.07999 * 120.00221 * 29.97591 * 18 17 14 20 20 C 1.38817 * 119.99970 * 209.97357 * 18 17 14 21 21 N 1.31617 * 120.00045 * 15.41423 * 20 18 17 22 22 Si 1.86798 * 120.00091 * 195.68267 * 20 18 17 23 23 H 1.48496 * 109.46823 * 90.00076 * 22 20 18 24 24 H 1.48496 * 109.47325 * 210.00554 * 22 20 18 25 25 H 1.48508 * 109.47019 * 330.00486 * 22 20 18 26 26 C 1.46931 * 118.73705 * 53.86846 * 17 14 13 27 27 C 1.35909 * 107.17626 * 359.56593 * 6 5 4 28 28 O 1.34206 * 125.44575 * 359.96773 * 4 3 2 29 29 H 1.08994 * 109.47333 * 300.00672 * 1 2 3 30 30 H 1.09009 * 109.46868 * 60.00466 * 1 2 3 31 31 H 1.08999 * 109.47180 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47287 * 240.00005 * 2 1 3 33 33 H 1.09002 * 109.46981 * 120.00216 * 2 1 3 34 34 H 0.97000 * 120.00575 * 359.97438 * 9 7 6 35 35 H 1.08991 * 109.46352 * 298.56615 * 12 10 9 36 36 H 1.09004 * 109.44293 * 178.59625 * 12 10 9 37 37 H 1.08995 * 109.49476 * 301.41134 * 13 12 10 38 38 H 1.08999 * 109.49625 * 181.31540 * 13 12 10 39 39 H 1.09010 * 109.46861 * 179.28716 * 16 14 13 40 40 H 1.09003 * 109.47265 * 299.28754 * 16 14 13 41 41 H 1.09001 * 109.47286 * 59.29135 * 16 14 13 42 42 H 0.97000 * 120.00343 * 180.02562 * 21 20 18 43 43 H 1.09003 * 109.58899 * 65.91988 * 26 17 14 44 44 H 1.08994 * 109.59109 * 186.35045 * 26 17 14 45 45 H 1.08000 * 126.45818 * 180.26331 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3482 1.5246 -0.0005 5 7 3.9594 2.6781 0.0056 6 6 5.3039 2.4523 -0.0001 7 6 6.3630 3.4770 0.0001 8 8 7.5325 3.1428 0.0003 9 7 6.0358 4.7844 0.0003 10 6 7.0887 5.8031 -0.0001 11 1 7.9356 5.4507 -0.5887 12 6 6.5465 7.0979 -0.6097 13 6 5.3363 7.5756 0.1964 14 6 5.7691 7.8637 1.6374 15 1 6.4678 8.7001 1.6510 16 6 4.5410 8.2075 2.4826 17 7 6.4231 6.6665 2.1830 18 6 5.9989 6.1164 3.3631 19 1 4.9636 6.2031 3.6581 20 6 6.8997 5.4471 4.1803 21 7 8.1940 5.5931 3.9911 22 14 6.2748 4.3334 5.5436 23 1 6.1079 2.9544 5.0187 24 1 7.2525 4.3228 6.6613 25 1 4.9672 4.8379 6.0346 26 6 7.5449 6.0744 1.4416 27 6 5.4846 1.1053 -0.0003 28 8 4.2631 0.5427 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 5.1031 5.0510 -0.0002 35 1 6.2465 6.9158 -1.6415 36 1 7.3229 7.8627 -0.5867 37 1 4.5695 6.8010 0.1948 38 1 4.9365 8.4850 -0.2521 39 1 4.8495 8.3997 3.5103 40 1 4.0573 9.0957 2.0762 41 1 3.8413 7.3719 2.4637 42 1 8.8234 5.1252 4.5619 43 1 8.3864 6.7672 1.4372 44 1 7.8421 5.1384 1.9145 45 1 6.4309 0.5847 -0.0001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071645173.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:42 Heat of formation + Delta-G solvation = -23.800409 kcal Electronic energy + Delta-G solvation = -28649.358993 eV Core-core repulsion = 24670.099337 eV Total energy + Delta-G solvation = -3979.259657 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.37327 -39.41024 -38.99604 -37.45763 -34.84905 -34.03765 -32.64650 -32.22239 -30.61413 -29.82695 -29.35463 -26.22751 -25.01413 -24.25453 -23.60468 -22.35404 -22.08444 -20.72612 -20.25824 -18.97664 -18.63657 -17.59734 -17.18511 -16.36597 -16.17712 -15.75906 -15.43689 -15.00810 -14.86817 -14.21182 -13.96161 -13.81082 -13.56115 -13.32867 -13.20049 -13.10557 -13.03441 -12.74587 -12.41269 -12.10144 -11.87388 -11.56559 -11.17123 -11.08406 -10.93474 -10.83600 -10.79669 -10.69233 -10.65410 -10.30343 -10.24844 -9.89051 -9.70052 -9.42708 -9.36676 -8.66143 -8.37885 -8.27703 -6.51801 -5.67973 -3.11565 1.25192 1.85362 2.20712 2.70389 3.42833 3.49882 3.50074 3.59836 3.82481 4.45529 4.46080 4.56754 4.62792 4.77936 4.97682 5.12937 5.33999 5.37465 5.39242 5.43539 5.50738 5.56339 5.59712 5.63878 5.68236 5.90981 6.09085 6.20136 6.22968 6.41259 6.43556 6.52461 6.58916 6.61786 6.70591 6.75490 6.96398 7.13146 7.21377 7.42427 7.56197 7.75425 7.92071 8.17765 8.56865 8.76197 9.31234 9.95467 10.51929 11.40105 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.010888 B = 0.004421 C = 0.004054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2571.046035 B = 6331.913787 C = 6905.159585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.051 3.949 3 O -0.246 6.246 4 C 0.376 3.624 5 N -0.449 5.449 6 C -0.032 4.032 7 C 0.599 3.401 8 O -0.542 6.542 9 N -0.677 5.677 10 C 0.115 3.885 11 H 0.077 0.923 12 C -0.118 4.118 13 C -0.132 4.132 14 C 0.166 3.834 15 H 0.025 0.975 16 C -0.136 4.136 17 N -0.582 5.582 18 C -0.245 4.245 19 H 0.067 0.933 20 C 0.006 3.994 21 N -0.900 5.900 22 Si 0.894 3.106 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.280 1.280 26 C 0.163 3.837 27 C -0.009 4.009 28 O -0.229 6.229 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.405 0.595 35 H 0.052 0.948 36 H 0.071 0.929 37 H 0.057 0.943 38 H 0.053 0.947 39 H 0.060 0.940 40 H 0.036 0.964 41 H 0.052 0.948 42 H 0.252 0.748 43 H 0.028 0.972 44 H 0.095 0.905 45 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.464 -8.436 -11.277 18.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.024 4.024 3 O -0.154 6.154 4 C 0.130 3.870 5 N -0.195 5.195 6 C -0.151 4.151 7 C 0.383 3.617 8 O -0.421 6.421 9 N -0.326 5.326 10 C 0.010 3.990 11 H 0.095 0.905 12 C -0.156 4.156 13 C -0.171 4.171 14 C 0.059 3.941 15 H 0.042 0.958 16 C -0.193 4.193 17 N -0.306 5.306 18 C -0.375 4.375 19 H 0.085 0.915 20 C -0.193 4.193 21 N -0.545 5.545 22 Si 0.725 3.275 23 H -0.218 1.218 24 H -0.218 1.218 25 H -0.205 1.205 26 C 0.036 3.964 27 C -0.081 4.081 28 O -0.121 6.121 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.104 0.896 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.242 0.758 35 H 0.070 0.930 36 H 0.090 0.910 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.055 0.945 41 H 0.071 0.929 42 H 0.062 0.938 43 H 0.046 0.954 44 H 0.114 0.886 45 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -11.053 -8.041 -11.148 17.638 hybrid contribution -0.394 -1.429 0.873 1.720 sum -11.447 -9.470 -10.275 18.063 Atomic orbital electron populations 1.21803 0.91367 1.03484 1.04212 1.23018 0.96740 0.79665 1.02945 1.86373 1.09147 1.30490 1.89422 1.23288 0.83351 0.81731 0.98667 1.71133 1.04136 1.21341 1.22843 1.21896 0.90165 0.94226 1.08795 1.16550 0.85903 0.82029 0.77214 1.90806 1.17830 1.81458 1.51961 1.45676 1.11127 1.04420 1.71400 1.21951 0.89547 0.86295 1.01223 0.90452 1.21684 0.98927 0.97000 0.97978 1.22078 0.97175 0.99885 0.98006 1.20459 0.93175 0.89875 0.90549 0.95772 1.21799 0.97627 0.99232 1.00678 1.44052 1.37177 1.26739 1.22602 1.19096 0.92750 1.29839 0.95811 0.91497 1.25036 0.95185 1.01511 0.97553 1.69984 1.00190 1.43858 1.40429 0.86406 0.77882 0.81366 0.81844 1.21751 1.21818 1.20523 1.21267 0.88766 0.99863 0.86483 1.24916 0.85620 0.93046 1.04518 1.84350 1.16308 1.39196 1.72205 0.90909 0.91027 0.89591 0.90948 0.90865 0.75823 0.92967 0.91019 0.92406 0.92841 0.92092 0.94459 0.92889 0.93763 0.95450 0.88641 0.74899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 10.28 37.16 0.38 -0.49 16 2 C 0.05 0.42 6.38 37.16 0.24 0.65 16 3 O -0.25 -3.12 10.19 -40.99 -0.42 -3.53 16 4 C 0.38 5.65 8.98 52.22 0.47 6.11 16 5 N -0.45 -7.92 11.10 -11.71 -0.13 -8.05 16 6 C -0.03 -0.56 6.99 -82.99 -0.58 -1.14 16 7 C 0.60 12.16 7.78 -12.55 -0.10 12.06 16 8 O -0.54 -12.16 16.55 5.25 0.09 -12.07 16 9 N -0.68 -13.29 4.92 -54.56 -0.27 -13.56 16 10 C 0.12 2.28 2.81 -67.58 -0.19 2.09 16 11 H 0.08 1.52 7.58 -51.93 -0.39 1.13 16 12 C -0.12 -1.94 5.58 -26.69 -0.15 -2.09 16 13 C -0.13 -2.24 5.21 -26.61 -0.14 -2.37 16 14 C 0.17 3.39 3.49 -67.60 -0.24 3.15 16 15 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 16 C -0.14 -2.58 7.95 37.16 0.30 -2.29 16 17 N -0.58 -14.26 2.90 -164.51 -0.48 -14.74 16 18 C -0.25 -6.67 8.57 -15.06 -0.13 -6.80 16 19 H 0.07 1.81 6.25 -52.49 -0.33 1.48 16 20 C 0.01 0.17 4.94 -17.43 -0.09 0.08 16 21 N -0.90 -26.77 11.22 55.49 0.62 -26.15 16 22 Si 0.89 22.65 29.58 -169.99 -5.03 17.62 16 23 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 24 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 25 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 26 C 0.16 3.95 4.93 -3.48 -0.02 3.94 16 27 C -0.01 -0.13 11.93 29.90 0.36 0.22 16 28 O -0.23 -3.11 10.20 -17.76 -0.18 -3.30 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 31 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.41 7.72 6.50 -40.82 -0.27 7.45 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 37 H 0.06 1.01 6.40 -51.93 -0.33 0.68 16 38 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.06 1.26 7.63 -51.92 -0.40 0.86 16 40 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.05 1.03 7.44 -51.93 -0.39 0.64 16 42 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 43 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.10 2.72 6.13 -51.93 -0.32 2.40 16 45 H 0.23 2.64 8.06 -52.49 -0.42 2.21 16 LS Contribution 367.65 15.07 5.54 5.54 Total: -1.00 -33.03 367.65 -6.76 -39.79 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -6.63 Total: 5.32 kcal Atomic # 6 Polarization: 13.01 SS G_CDS: 0.12 Total: 13.13 kcal Atomic # 7 Polarization: -62.24 SS G_CDS: -0.25 Total: -62.49 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: -0.51 Total: -18.90 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.03 Total: 17.62 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.03 -6.76 -39.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071645173.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.991 kcal (2) G-P(sol) polarization free energy of solvation -33.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds