Wall clock time and date at job start Tue Mar 31 2020 14:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42902 * 109.47141 * 2 1 4 4 C 1.35358 * 117.00003 * 180.02562 * 3 2 1 5 5 N 1.30544 * 125.44647 * 180.33595 * 4 3 2 6 6 C 1.36328 * 108.38201 * 180.12440 * 5 4 3 7 7 C 1.47373 * 126.41127 * 179.82557 * 6 5 4 8 8 O 1.21626 * 119.99755 * 179.68737 * 7 6 5 9 9 N 1.34771 * 120.00002 * 359.69447 * 7 6 5 10 10 C 1.46503 * 120.00038 * 180.02562 * 9 7 6 11 11 H 1.08998 * 109.49647 * 34.93464 * 10 9 7 12 12 C 1.53044 * 109.49748 * 154.99407 * 10 9 7 13 13 C 1.53044 * 109.53536 * 58.58986 * 12 10 9 14 14 C 1.53191 * 109.31282 * 61.36383 * 13 12 10 15 15 H 1.08999 * 109.70834 * 65.22509 * 14 13 12 16 16 C 1.53000 * 109.58261 * 185.57801 * 14 13 12 17 17 N 1.46925 * 108.77514 * 305.35896 * 14 13 12 18 18 C 1.36935 * 120.63365 * 233.58727 * 17 14 13 19 19 H 1.07999 * 120.00221 * 29.97591 * 18 17 14 20 20 C 1.38817 * 119.99970 * 209.97357 * 18 17 14 21 21 N 1.31617 * 120.00045 * 15.41423 * 20 18 17 22 22 Si 1.86798 * 120.00091 * 195.68267 * 20 18 17 23 23 H 1.48496 * 109.46823 * 90.00076 * 22 20 18 24 24 H 1.48496 * 109.47325 * 210.00554 * 22 20 18 25 25 H 1.48508 * 109.47019 * 330.00486 * 22 20 18 26 26 C 1.46931 * 118.73705 * 53.86846 * 17 14 13 27 27 C 1.35909 * 107.17626 * 359.56593 * 6 5 4 28 28 O 1.34206 * 125.44575 * 359.96773 * 4 3 2 29 29 H 1.08994 * 109.47333 * 300.00672 * 1 2 3 30 30 H 1.09009 * 109.46868 * 60.00466 * 1 2 3 31 31 H 1.08999 * 109.47180 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47287 * 240.00005 * 2 1 3 33 33 H 1.09002 * 109.46981 * 120.00216 * 2 1 3 34 34 H 0.97000 * 120.00575 * 359.97438 * 9 7 6 35 35 H 1.08991 * 109.46352 * 298.56615 * 12 10 9 36 36 H 1.09004 * 109.44293 * 178.59625 * 12 10 9 37 37 H 1.08995 * 109.49476 * 301.41134 * 13 12 10 38 38 H 1.08999 * 109.49625 * 181.31540 * 13 12 10 39 39 H 1.09010 * 109.46861 * 179.28716 * 16 14 13 40 40 H 1.09003 * 109.47265 * 299.28754 * 16 14 13 41 41 H 1.09001 * 109.47286 * 59.29135 * 16 14 13 42 42 H 0.97000 * 120.00343 * 180.02562 * 21 20 18 43 43 H 1.09003 * 109.58899 * 65.91988 * 26 17 14 44 44 H 1.08994 * 109.59109 * 186.35045 * 26 17 14 45 45 H 1.08000 * 126.45818 * 180.26331 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3482 1.5246 -0.0005 5 7 3.9594 2.6781 0.0056 6 6 5.3039 2.4523 -0.0001 7 6 6.3630 3.4770 0.0001 8 8 7.5325 3.1428 0.0003 9 7 6.0358 4.7844 0.0003 10 6 7.0887 5.8031 -0.0001 11 1 7.9356 5.4507 -0.5887 12 6 6.5465 7.0979 -0.6097 13 6 5.3363 7.5756 0.1964 14 6 5.7691 7.8637 1.6374 15 1 6.4678 8.7001 1.6510 16 6 4.5410 8.2075 2.4826 17 7 6.4231 6.6665 2.1830 18 6 5.9989 6.1164 3.3631 19 1 4.9636 6.2031 3.6581 20 6 6.8997 5.4471 4.1803 21 7 8.1940 5.5931 3.9911 22 14 6.2748 4.3334 5.5436 23 1 6.1079 2.9544 5.0187 24 1 7.2525 4.3228 6.6613 25 1 4.9672 4.8379 6.0346 26 6 7.5449 6.0744 1.4416 27 6 5.4846 1.1053 -0.0003 28 8 4.2631 0.5427 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 5.1031 5.0510 -0.0002 35 1 6.2465 6.9158 -1.6415 36 1 7.3229 7.8627 -0.5867 37 1 4.5695 6.8010 0.1948 38 1 4.9365 8.4850 -0.2521 39 1 4.8495 8.3997 3.5103 40 1 4.0573 9.0957 2.0762 41 1 3.8413 7.3719 2.4637 42 1 8.8234 5.1252 4.5619 43 1 8.3864 6.7672 1.4372 44 1 7.8421 5.1384 1.9145 45 1 6.4309 0.5847 -0.0001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071645173.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:41 Heat of formation + Delta-G solvation = -49.612157 kcal Electronic energy + Delta-G solvation = -28650.478275 eV Core-core repulsion = 24670.099337 eV Total energy + Delta-G solvation = -3980.378938 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.54981 -40.94445 -39.98326 -39.10365 -36.09911 -35.75509 -34.48836 -32.92240 -32.14404 -31.71894 -30.53876 -27.90378 -26.87221 -25.44921 -24.51882 -23.87997 -23.43226 -22.13849 -21.76918 -20.35617 -20.15673 -18.65934 -18.55301 -18.10417 -17.48203 -17.13553 -16.66235 -16.50078 -16.09783 -15.90624 -15.67527 -15.49216 -15.04247 -14.73852 -14.51825 -14.43124 -14.00267 -13.93158 -13.65783 -13.57399 -13.00381 -12.86830 -12.68323 -12.63911 -12.58186 -12.51056 -12.40597 -12.11964 -12.06860 -11.91306 -11.79461 -11.57141 -11.31676 -11.15310 -11.04131 -10.52211 -10.03960 -9.73742 -8.54743 -7.81094 -5.25897 0.02768 0.80553 0.94112 1.37977 1.40653 1.47709 1.65698 2.15109 2.36129 2.50015 3.33672 3.39841 3.65541 3.72572 3.91513 3.95656 4.01115 4.09723 4.11689 4.20240 4.25214 4.37916 4.49490 4.61610 4.66866 4.75163 4.82704 4.84088 4.86303 4.97493 5.04859 5.09427 5.12207 5.17684 5.27141 5.34019 5.56366 5.61043 5.63613 5.67408 5.74765 5.75267 6.35010 6.46296 6.66581 7.20429 7.21670 7.94432 8.45039 9.23903 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.010888 B = 0.004421 C = 0.004054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2571.046035 B = 6331.913787 C = 6905.159585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.039 3.961 3 O -0.255 6.255 4 C 0.383 3.617 5 N -0.480 5.480 6 C -0.070 4.070 7 C 0.594 3.406 8 O -0.574 6.574 9 N -0.675 5.675 10 C 0.124 3.876 11 H 0.075 0.925 12 C -0.110 4.110 13 C -0.121 4.121 14 C 0.155 3.845 15 H 0.019 0.981 16 C -0.128 4.128 17 N -0.596 5.596 18 C -0.236 4.236 19 H 0.069 0.931 20 C -0.050 4.050 21 N -0.933 5.933 22 Si 0.946 3.054 23 H -0.298 1.298 24 H -0.295 1.295 25 H -0.266 1.266 26 C 0.172 3.828 27 C 0.020 3.980 28 O -0.214 6.214 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.113 0.887 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.409 0.591 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.054 0.946 38 H 0.091 0.909 39 H 0.036 0.964 40 H 0.076 0.924 41 H 0.045 0.955 42 H 0.244 0.756 43 H 0.005 0.995 44 H 0.048 0.952 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.950 -8.902 -12.771 20.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.035 4.035 3 O -0.164 6.164 4 C 0.136 3.864 5 N -0.227 5.227 6 C -0.188 4.188 7 C 0.380 3.620 8 O -0.455 6.455 9 N -0.323 5.323 10 C 0.018 3.982 11 H 0.093 0.907 12 C -0.148 4.148 13 C -0.160 4.160 14 C 0.050 3.950 15 H 0.037 0.963 16 C -0.186 4.186 17 N -0.319 5.319 18 C -0.366 4.366 19 H 0.087 0.913 20 C -0.245 4.245 21 N -0.580 5.580 22 Si 0.776 3.224 23 H -0.226 1.226 24 H -0.222 1.222 25 H -0.191 1.191 26 C 0.045 3.955 27 C -0.053 4.053 28 O -0.105 6.105 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.131 0.869 32 H 0.107 0.893 33 H 0.098 0.902 34 H 0.246 0.754 35 H 0.102 0.898 36 H 0.099 0.901 37 H 0.073 0.927 38 H 0.109 0.891 39 H 0.055 0.945 40 H 0.094 0.906 41 H 0.064 0.936 42 H 0.053 0.947 43 H 0.023 0.977 44 H 0.067 0.933 45 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -13.604 -8.485 -12.658 20.428 hybrid contribution 0.287 -1.317 1.308 1.878 sum -13.318 -9.802 -11.350 20.056 Atomic orbital electron populations 1.21859 0.89528 1.05136 1.03898 1.23470 0.98130 0.77791 1.04085 1.86422 1.07573 1.33347 1.89014 1.23340 0.84261 0.81422 0.97329 1.71002 1.04188 1.22941 1.24521 1.21618 0.90043 0.94817 1.12365 1.16930 0.86178 0.82629 0.76297 1.90774 1.19260 1.81996 1.53444 1.45649 1.11113 1.04383 1.71191 1.21733 0.90082 0.88324 0.98073 0.90697 1.21669 0.98941 0.94949 0.99211 1.21963 0.97118 1.01528 0.95395 1.20757 0.93265 0.87974 0.93008 0.96296 1.21722 0.96911 1.00648 0.99273 1.44262 1.37172 1.28367 1.22128 1.19354 0.92629 1.28522 0.96130 0.91344 1.25667 0.95403 1.03490 0.99986 1.70139 1.01088 1.45272 1.41543 0.85564 0.77821 0.79348 0.79654 1.22628 1.22156 1.19055 1.20960 0.88506 0.96981 0.89027 1.25475 0.86638 0.92134 1.01024 1.84394 1.15860 1.38496 1.71774 0.91572 0.90988 0.86879 0.89344 0.90204 0.75400 0.89794 0.90145 0.92706 0.89079 0.94518 0.90555 0.93597 0.94699 0.97700 0.93346 0.72004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 10.28 71.98 0.74 -0.60 16 2 C 0.04 0.54 6.38 71.98 0.46 1.00 16 3 O -0.25 -6.05 10.19 -64.27 -0.65 -6.71 16 4 C 0.38 10.99 8.98 130.43 1.17 12.16 16 5 N -0.48 -16.66 11.10 -419.39 -4.65 -21.31 16 6 C -0.07 -2.49 6.99 40.31 0.28 -2.21 16 7 C 0.59 24.45 7.78 86.65 0.67 25.13 16 8 O -0.57 -26.44 16.55 -4.11 -0.07 -26.50 16 9 N -0.67 -26.51 4.92 -444.77 -2.19 -28.69 16 10 C 0.12 4.89 2.81 45.22 0.13 5.02 16 11 H 0.07 2.99 7.58 -2.39 -0.02 2.97 16 12 C -0.11 -3.35 5.58 30.62 0.17 -3.18 16 13 C -0.12 -3.74 5.21 30.67 0.16 -3.58 16 14 C 0.16 6.14 3.49 44.97 0.16 6.30 16 15 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 16 C -0.13 -4.65 7.95 71.98 0.57 -4.07 16 17 N -0.60 -29.55 2.90 -674.39 -1.95 -31.51 16 18 C -0.24 -13.04 8.57 84.04 0.72 -12.32 16 19 H 0.07 3.72 6.25 -2.91 -0.02 3.70 16 20 C -0.05 -2.94 4.94 84.86 0.42 -2.52 16 21 N -0.93 -57.96 11.22 21.65 0.24 -57.72 16 22 Si 0.95 47.67 29.58 68.60 2.03 49.70 16 23 H -0.30 -15.28 7.11 99.48 0.71 -14.57 16 24 H -0.29 -14.87 7.11 99.48 0.71 -14.16 16 25 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 26 C 0.17 8.65 4.93 86.51 0.43 9.08 16 27 C 0.02 0.55 11.93 67.28 0.80 1.35 16 28 O -0.21 -5.40 10.20 18.87 0.19 -5.21 16 29 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.09 0.95 8.14 -2.39 -0.02 0.94 16 33 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.41 15.35 6.50 -92.71 -0.60 14.75 16 35 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.08 2.35 8.14 -2.38 -0.02 2.33 16 37 H 0.05 1.76 6.40 -2.39 -0.02 1.74 16 38 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.04 1.48 7.63 -2.38 -0.02 1.46 16 40 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.04 1.71 7.44 -2.39 -0.02 1.69 16 42 H 0.24 14.92 8.31 -92.71 -0.77 14.15 16 43 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 44 H 0.05 2.90 6.13 -2.39 -0.01 2.88 16 45 H 0.26 5.40 8.06 -2.91 -0.02 5.37 16 Total: -1.00 -75.11 367.65 0.24 -74.88 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: 0.41 Total: 21.53 kcal Atomic # 6 Polarization: 24.66 SS G_CDS: 6.88 Total: 31.54 kcal Atomic # 7 Polarization: -130.68 SS G_CDS: -8.55 Total: -139.23 kcal Atomic # 8 Polarization: -37.88 SS G_CDS: -0.53 Total: -38.42 kcal Atomic # 14 Polarization: 47.67 SS G_CDS: 2.03 Total: 49.70 kcal Total: -75.11 0.24 -74.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071645173.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.265 kcal (2) G-P(sol) polarization free energy of solvation -75.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds