Wall clock time and date at job start Tue Mar 31 2020 14:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42904 * 109.47159 * 2 1 4 4 C 1.35347 * 117.00214 * 180.02562 * 3 2 1 5 5 N 1.30545 * 125.45089 * 180.32014 * 4 3 2 6 6 C 1.36326 * 108.38835 * 180.15276 * 5 4 3 7 7 C 1.47367 * 126.41565 * 179.86071 * 6 5 4 8 8 O 1.21623 * 120.00102 * 179.68163 * 7 6 5 9 9 N 1.34771 * 120.00018 * 359.68652 * 7 6 5 10 10 C 1.46497 * 119.99896 * 179.97438 * 9 7 6 11 11 H 1.08998 * 109.52667 * 325.08007 * 10 9 7 12 12 C 1.53044 * 109.49704 * 204.99787 * 10 9 7 13 13 C 1.53041 * 109.53884 * 301.41588 * 12 10 9 14 14 C 1.53193 * 109.31300 * 298.63377 * 13 12 10 15 15 H 1.08999 * 109.58326 * 294.84905 * 14 13 12 16 16 C 1.53006 * 109.58433 * 174.56357 * 14 13 12 17 17 N 1.46917 * 108.77325 * 54.63612 * 14 13 12 18 18 C 1.36945 * 120.63269 * 126.36835 * 17 14 13 19 19 H 1.07999 * 119.99653 * 330.19743 * 18 17 14 20 20 C 1.38810 * 120.00178 * 150.19385 * 18 17 14 21 21 N 1.31620 * 119.99942 * 344.48884 * 20 18 17 22 22 Si 1.86795 * 119.99872 * 164.48482 * 20 18 17 23 23 H 1.48497 * 109.47152 * 60.00445 * 22 20 18 24 24 H 1.48507 * 109.47028 * 180.02562 * 22 20 18 25 25 H 1.48494 * 109.47373 * 300.00024 * 22 20 18 26 26 C 1.46924 * 118.74011 * 306.38942 * 17 14 13 27 27 C 1.35920 * 107.17000 * 359.59585 * 6 5 4 28 28 O 1.34209 * 125.44309 * 0.02562 * 4 3 2 29 29 H 1.08999 * 109.47332 * 300.00056 * 1 2 3 30 30 H 1.09000 * 109.46854 * 60.00237 * 1 2 3 31 31 H 1.09001 * 109.47145 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47332 * 239.99943 * 2 1 3 33 33 H 1.08994 * 109.46949 * 120.00186 * 2 1 3 34 34 H 0.96997 * 119.99819 * 0.02562 * 9 7 6 35 35 H 1.09001 * 109.46216 * 181.39811 * 12 10 9 36 36 H 1.09001 * 109.45852 * 61.43589 * 12 10 9 37 37 H 1.09000 * 109.49323 * 178.67827 * 13 12 10 38 38 H 1.08997 * 109.49680 * 58.58704 * 13 12 10 39 39 H 1.09000 * 109.47021 * 60.28316 * 16 14 13 40 40 H 1.08996 * 109.46860 * 180.28361 * 16 14 13 41 41 H 1.08996 * 109.46920 * 300.28384 * 16 14 13 42 42 H 0.97005 * 119.99905 * 180.02562 * 21 20 18 43 43 H 1.09006 * 109.58907 * 293.81968 * 26 17 14 44 44 H 1.09004 * 109.70724 * 173.46839 * 26 17 14 45 45 H 1.08002 * 126.45673 * 180.22369 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3482 1.5247 -0.0005 5 7 3.9595 2.6782 0.0053 6 6 5.3039 2.4524 -0.0010 7 6 6.3630 3.4771 -0.0005 8 8 7.5325 3.1430 -0.0007 9 7 6.0358 4.7845 0.0004 10 6 7.0887 5.8031 0.0014 11 1 7.9360 5.4506 0.5895 12 6 6.5465 7.0976 0.6118 13 6 5.3363 7.5757 -0.1938 14 6 5.7691 7.8648 -1.6347 15 1 6.4687 8.7006 -1.6453 16 6 4.5414 8.2127 -2.4789 17 7 6.4231 6.6681 -2.1811 18 6 5.9984 6.1181 -3.3611 19 1 4.9634 6.2071 -3.6567 20 6 6.8980 5.4465 -4.1774 21 7 8.1926 5.5913 -3.9889 22 14 6.2714 4.3370 -5.5433 23 1 5.4524 5.1339 -6.4917 24 1 7.4244 3.7404 -6.2645 25 1 5.4395 3.2544 -4.9594 26 6 7.5412 6.0722 -1.4372 27 6 5.4846 1.1053 -0.0018 28 8 4.2630 0.5427 -0.0016 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 5.1031 5.0510 0.0010 35 1 7.3226 7.8625 0.5897 36 1 6.2465 6.9146 1.6437 37 1 4.9365 8.4848 0.2554 38 1 4.5695 6.8012 -0.1927 39 1 4.0556 9.0970 -2.0666 40 1 4.8508 8.4131 -3.5046 41 1 3.8432 7.3757 -2.4669 42 1 8.8213 5.1222 -4.5595 43 1 8.3854 6.7618 -1.4318 44 1 7.8381 5.1350 -1.9081 45 1 6.4309 0.5847 -0.0028 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071645179.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:47 Heat of formation + Delta-G solvation = -49.497124 kcal Electronic energy + Delta-G solvation = -28651.881806 eV Core-core repulsion = 24671.507856 eV Total energy + Delta-G solvation = -3980.373950 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.54874 -40.95472 -39.98614 -39.10612 -36.09881 -35.75501 -34.48906 -32.92361 -32.14676 -31.72477 -30.53815 -27.91862 -26.86616 -25.45030 -24.52045 -23.88246 -23.43350 -22.13850 -21.76958 -20.35375 -20.15742 -18.65959 -18.55471 -18.10345 -17.48136 -17.13186 -16.66186 -16.50213 -16.09956 -15.90920 -15.67847 -15.49074 -15.04241 -14.73798 -14.51934 -14.43108 -14.00286 -13.93306 -13.65488 -13.57480 -12.98069 -12.87452 -12.68440 -12.61648 -12.58997 -12.51687 -12.41494 -12.12774 -12.09383 -11.91295 -11.79481 -11.57096 -11.31760 -11.14967 -11.04380 -10.51059 -10.04096 -9.73685 -8.54186 -7.80946 -5.25505 0.02867 0.80769 0.93850 1.38575 1.41749 1.46916 1.65706 2.15375 2.36002 2.50450 3.33905 3.39769 3.65476 3.72592 3.91411 3.95538 4.00841 4.09689 4.11695 4.20230 4.25108 4.37937 4.50243 4.61630 4.66937 4.75147 4.82736 4.83977 4.86201 4.97293 5.04681 5.09264 5.12088 5.17557 5.27090 5.33967 5.56251 5.60949 5.63459 5.67315 5.74751 5.75206 6.34996 6.46386 6.66512 7.20690 7.21648 7.94783 8.45383 9.24169 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.010885 B = 0.004422 C = 0.004054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2571.629134 B = 6331.095107 C = 6904.562076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.039 3.961 3 O -0.255 6.255 4 C 0.383 3.617 5 N -0.481 5.481 6 C -0.071 4.071 7 C 0.594 3.406 8 O -0.574 6.574 9 N -0.675 5.675 10 C 0.124 3.876 11 H 0.075 0.925 12 C -0.110 4.110 13 C -0.121 4.121 14 C 0.156 3.844 15 H 0.019 0.981 16 C -0.128 4.128 17 N -0.595 5.595 18 C -0.238 4.238 19 H 0.068 0.932 20 C -0.050 4.050 21 N -0.933 5.933 22 Si 0.947 3.053 23 H -0.272 1.272 24 H -0.297 1.297 25 H -0.290 1.290 26 C 0.173 3.827 27 C 0.020 3.980 28 O -0.214 6.214 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.113 0.887 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.409 0.591 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.054 0.946 39 H 0.076 0.924 40 H 0.036 0.964 41 H 0.045 0.955 42 H 0.244 0.756 43 H 0.004 0.996 44 H 0.048 0.952 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.875 -8.957 12.709 20.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.035 4.035 3 O -0.164 6.164 4 C 0.136 3.864 5 N -0.227 5.227 6 C -0.189 4.189 7 C 0.380 3.620 8 O -0.454 6.454 9 N -0.324 5.324 10 C 0.018 3.982 11 H 0.093 0.907 12 C -0.148 4.148 13 C -0.160 4.160 14 C 0.050 3.950 15 H 0.037 0.963 16 C -0.185 4.185 17 N -0.319 5.319 18 C -0.368 4.368 19 H 0.086 0.914 20 C -0.245 4.245 21 N -0.580 5.580 22 Si 0.777 3.223 23 H -0.197 1.197 24 H -0.223 1.223 25 H -0.217 1.217 26 C 0.046 3.954 27 C -0.053 4.053 28 O -0.105 6.105 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.131 0.869 32 H 0.098 0.902 33 H 0.107 0.893 34 H 0.246 0.754 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.109 0.891 38 H 0.073 0.927 39 H 0.095 0.905 40 H 0.055 0.945 41 H 0.064 0.936 42 H 0.053 0.947 43 H 0.022 0.978 44 H 0.066 0.934 45 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -13.514 -8.545 12.610 20.363 hybrid contribution 0.252 -1.300 -1.308 1.861 sum -13.262 -9.844 11.302 20.013 Atomic orbital electron populations 1.21861 0.89525 1.05141 1.03894 1.23471 0.98132 0.77785 1.04086 1.86419 1.07586 1.33358 1.89011 1.23336 0.84263 0.81429 0.97335 1.70997 1.04213 1.22945 1.24536 1.21622 0.90032 0.94832 1.12371 1.16924 0.86180 0.82621 0.76296 1.90773 1.19235 1.81996 1.53444 1.45658 1.11108 1.04398 1.71210 1.21661 0.90104 0.88336 0.98083 0.90657 1.21670 0.98943 0.94954 0.99213 1.21969 0.97119 1.01524 0.95434 1.20749 0.93267 0.87981 0.92981 0.96315 1.21715 0.96908 1.00648 0.99270 1.44226 1.37411 1.28278 1.21987 1.19305 0.92650 1.28656 0.96216 0.91414 1.25663 0.95386 1.03473 0.99976 1.70141 1.01097 1.45204 1.41553 0.85635 0.76823 0.79646 0.80199 1.19727 1.22293 1.21709 1.20860 0.88566 0.96970 0.89053 1.25484 0.86638 0.92119 1.01015 1.84395 1.15866 1.38489 1.71774 0.90983 0.91584 0.86869 0.90200 0.89341 0.75419 0.90137 0.89795 0.89075 0.92729 0.90530 0.94525 0.93593 0.94691 0.97780 0.93363 0.71960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 10.28 71.98 0.74 -0.61 16 2 C 0.04 0.55 6.38 71.98 0.46 1.00 16 3 O -0.25 -6.09 10.19 -64.16 -0.65 -6.74 16 4 C 0.38 11.03 8.98 130.43 1.17 12.20 16 5 N -0.48 -16.72 11.10 -419.40 -4.65 -21.37 16 6 C -0.07 -2.50 6.99 40.31 0.28 -2.22 16 7 C 0.59 24.46 7.78 86.65 0.67 25.13 16 8 O -0.57 -26.38 16.55 -4.10 -0.07 -26.44 16 9 N -0.67 -26.56 4.91 -445.49 -2.19 -28.75 16 10 C 0.12 4.90 2.81 45.07 0.13 5.03 16 11 H 0.08 3.01 7.58 -2.39 -0.02 2.99 16 12 C -0.11 -3.36 5.59 30.62 0.17 -3.19 16 13 C -0.12 -3.76 5.21 30.67 0.16 -3.60 16 14 C 0.16 6.17 3.49 44.98 0.16 6.32 16 15 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 16 C -0.13 -4.64 7.96 71.98 0.57 -4.07 16 17 N -0.60 -29.58 2.90 -675.22 -1.96 -31.54 16 18 C -0.24 -13.16 8.58 84.03 0.72 -12.44 16 19 H 0.07 3.68 6.24 -2.91 -0.02 3.66 16 20 C -0.05 -2.91 4.94 84.86 0.42 -2.49 16 21 N -0.93 -57.92 11.23 21.65 0.24 -57.68 16 22 Si 0.95 47.64 29.58 68.60 2.03 49.67 16 23 H -0.27 -12.99 7.11 99.48 0.71 -12.28 16 24 H -0.30 -15.05 7.11 99.48 0.71 -14.34 16 25 H -0.29 -14.58 7.11 99.48 0.71 -13.87 16 26 C 0.17 8.67 4.88 86.36 0.42 9.09 16 27 C 0.02 0.55 11.93 67.28 0.80 1.35 16 28 O -0.21 -5.41 10.20 18.85 0.19 -5.21 16 29 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.41 15.39 6.50 -92.71 -0.60 14.79 16 35 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 36 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.05 1.76 6.40 -2.39 -0.02 1.74 16 39 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.04 1.47 7.66 -2.39 -0.02 1.46 16 41 H 0.04 1.71 7.42 -2.39 -0.02 1.69 16 42 H 0.24 14.95 8.31 -92.70 -0.77 14.18 16 43 H 0.00 0.23 8.14 -2.38 -0.02 0.21 16 44 H 0.05 2.88 6.15 -2.38 -0.01 2.87 16 45 H 0.26 5.37 8.06 -2.91 -0.02 5.35 16 Total: -1.00 -75.11 367.66 0.23 -74.88 By element: Atomic # 1 Polarization: 21.29 SS G_CDS: 0.41 Total: 21.70 kcal Atomic # 6 Polarization: 24.62 SS G_CDS: 6.88 Total: 31.50 kcal Atomic # 7 Polarization: -130.79 SS G_CDS: -8.56 Total: -139.34 kcal Atomic # 8 Polarization: -37.87 SS G_CDS: -0.53 Total: -38.40 kcal Atomic # 14 Polarization: 47.64 SS G_CDS: 2.03 Total: 49.67 kcal Total: -75.11 0.23 -74.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071645179.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.381 kcal (2) G-P(sol) polarization free energy of solvation -75.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds