Wall clock time and date at job start Tue Mar 31 2020 14:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42898 * 109.47503 * 2 1 4 4 C 1.35731 * 117.00061 * 180.02562 * 3 2 1 5 5 C 1.41856 * 126.78118 * 180.02562 * 4 3 2 6 6 C 1.36661 * 103.80621 * 180.02562 * 5 4 3 7 7 C 1.47546 * 126.87760 * 179.97438 * 6 5 4 8 8 O 1.21579 * 120.00136 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99854 * 179.97438 * 7 6 5 10 10 C 1.46500 * 119.99651 * 179.97438 * 9 7 6 11 11 H 1.08997 * 109.52966 * 325.08059 * 10 9 7 12 12 C 1.53048 * 109.49713 * 205.00201 * 10 9 7 13 13 C 1.53049 * 109.53589 * 301.41295 * 12 10 9 14 14 C 1.53190 * 109.31440 * 298.63486 * 13 12 10 15 15 H 1.08998 * 109.58636 * 294.84808 * 14 13 12 16 16 C 1.52998 * 109.58677 * 174.56451 * 14 13 12 17 17 N 1.46934 * 108.77418 * 54.63341 * 14 13 12 18 18 C 1.36942 * 120.62825 * 126.36825 * 17 14 13 19 19 H 1.07998 * 119.99637 * 330.91709 * 18 17 14 20 20 C 1.38808 * 119.99822 * 150.91540 * 18 17 14 21 21 N 1.31618 * 120.00035 * 160.72660 * 20 18 17 22 22 Si 1.86804 * 119.99940 * 340.72915 * 20 18 17 23 23 H 1.48498 * 109.46932 * 92.33211 * 22 20 18 24 24 H 1.48497 * 109.46797 * 212.33152 * 22 20 18 25 25 H 1.48502 * 109.47149 * 332.33182 * 22 20 18 26 26 C 1.46918 * 118.73858 * 306.39227 * 17 14 13 27 27 O 1.34657 * 106.24339 * 0.22248 * 6 5 4 28 28 N 1.20873 * 111.63298 * 359.59631 * 27 6 5 29 29 H 1.08998 * 109.47139 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46688 * 300.00027 * 1 2 3 31 31 H 1.08999 * 109.47179 * 59.99686 * 1 2 3 32 32 H 1.09002 * 109.46688 * 239.99973 * 2 1 3 33 33 H 1.09006 * 109.47239 * 120.00715 * 2 1 3 34 34 H 1.07991 * 128.09525 * 0.02562 * 5 4 3 35 35 H 0.96995 * 120.00459 * 0.02562 * 9 7 6 36 36 H 1.08997 * 109.45911 * 181.39554 * 12 10 9 37 37 H 1.08999 * 109.46083 * 61.43454 * 12 10 9 38 38 H 1.08997 * 109.49526 * 178.67886 * 13 12 10 39 39 H 1.09004 * 109.49542 * 58.59023 * 13 12 10 40 40 H 1.08994 * 109.47050 * 60.28275 * 16 14 13 41 41 H 1.09001 * 109.47050 * 180.28830 * 16 14 13 42 42 H 1.09009 * 109.47224 * 300.28210 * 16 14 13 43 43 H 0.96994 * 120.00055 * 179.97438 * 21 20 18 44 44 H 1.09002 * 109.59166 * 293.81994 * 26 17 14 45 45 H 1.09007 * 109.70456 * 173.46643 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3520 1.5250 -0.0005 5 6 4.0453 2.7626 -0.0001 6 6 5.3625 2.3986 -0.0016 7 6 6.5304 3.3003 -0.0024 8 8 6.3681 4.5052 -0.0022 9 7 7.7771 2.7883 -0.0033 10 6 8.9366 3.6836 -0.0047 11 1 8.7097 4.5728 -0.5929 12 6 10.1395 2.9607 -0.6152 13 6 10.4387 1.6945 0.1907 14 6 10.7873 2.0813 1.6313 15 1 11.7151 2.6533 1.6418 16 6 10.9550 0.8166 2.4758 17 7 9.6971 2.9010 2.1779 18 6 9.0920 2.5599 3.3581 19 1 9.0415 1.5240 3.6593 20 6 8.5438 3.5457 4.1671 21 7 7.6513 3.2265 5.0803 22 14 9.0726 5.3252 3.9597 23 1 8.1532 6.0078 3.0142 24 1 9.0280 6.0114 5.2759 25 1 10.4569 5.3711 3.4241 26 6 9.2683 4.0930 1.4338 27 8 5.3812 1.0521 -0.0077 28 7 4.2639 0.5910 -0.0021 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5140 0.8900 34 1 3.6294 3.7592 0.0010 35 1 7.9066 1.8270 -0.0038 36 1 11.0081 3.6188 -0.5933 37 1 9.9152 2.6900 -1.6470 38 1 11.2807 1.1678 -0.2585 39 1 9.5618 1.0470 0.1898 40 1 11.7601 0.2085 2.0634 41 1 11.1979 1.0941 3.5015 42 1 10.0262 0.2460 2.4641 43 1 7.2685 3.9152 5.6458 44 1 10.0721 4.8291 1.4281 45 1 8.3836 4.5217 1.9048 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071689058.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:47 Heat of formation + Delta-G solvation = -4.632510 kcal Electronic energy + Delta-G solvation = -28622.308714 eV Core-core repulsion = 24643.880240 eV Total energy + Delta-G solvation = -3978.428474 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -46.12978 -41.21421 -40.12112 -39.38547 -36.00244 -34.66727 -34.48963 -33.41326 -32.53944 -32.23714 -31.87621 -28.05429 -26.75870 -25.70044 -24.57847 -24.41089 -23.97537 -22.17002 -21.88942 -20.56489 -20.32805 -19.12305 -18.43105 -18.06002 -17.58754 -17.04071 -17.01672 -16.88145 -16.27328 -16.09838 -15.65229 -15.30856 -15.16539 -15.06126 -14.74351 -14.46124 -14.26696 -14.09752 -13.86269 -13.55985 -13.42132 -13.22302 -12.99433 -12.62666 -12.49763 -12.41641 -12.32013 -12.15470 -12.12719 -11.78208 -11.63159 -11.52448 -11.32926 -11.10691 -11.04728 -10.69471 -10.48587 -10.14686 -8.78083 -8.11033 -5.40848 -0.40930 0.91294 1.31998 1.36886 1.40508 1.44722 1.47031 1.88512 2.29120 2.45126 2.92639 3.10461 3.35748 3.56890 3.72805 3.90344 3.90912 3.93979 4.03530 4.07463 4.16062 4.25337 4.32304 4.50039 4.55271 4.59207 4.70400 4.77283 4.82291 4.84325 4.90088 4.98123 5.05407 5.13634 5.15195 5.23187 5.30705 5.42648 5.55528 5.67401 5.83198 5.96164 6.23627 6.28446 6.83810 6.94850 6.99717 7.71740 8.11040 9.08441 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.013782 B = 0.003977 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.084991 B = 7039.302570 C = 7577.083966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.047 3.953 3 O -0.288 6.288 4 C 0.207 3.793 5 C -0.161 4.161 6 C -0.053 4.053 7 C 0.603 3.397 8 O -0.549 6.549 9 N -0.674 5.674 10 C 0.130 3.870 11 H 0.093 0.907 12 C -0.110 4.110 13 C -0.126 4.126 14 C 0.158 3.842 15 H 0.041 0.959 16 C -0.131 4.131 17 N -0.609 5.609 18 C -0.221 4.221 19 H 0.068 0.932 20 C -0.034 4.034 21 N -0.959 5.959 22 Si 0.928 3.072 23 H -0.293 1.293 24 H -0.319 1.319 25 H -0.254 1.254 26 C 0.107 3.893 27 O 0.117 5.883 28 N -0.398 5.398 29 H 0.106 0.894 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.201 0.799 35 H 0.414 0.586 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.058 0.942 40 H 0.080 0.920 41 H 0.034 0.966 42 H 0.041 0.959 43 H 0.254 0.746 44 H 0.042 0.958 45 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.470 -6.568 -16.863 18.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.027 4.027 3 O -0.195 6.195 4 C 0.010 3.990 5 C -0.183 4.183 6 C -0.119 4.119 7 C 0.386 3.614 8 O -0.428 6.428 9 N -0.325 5.325 10 C 0.024 3.976 11 H 0.111 0.889 12 C -0.148 4.148 13 C -0.165 4.165 14 C 0.054 3.946 15 H 0.058 0.942 16 C -0.189 4.189 17 N -0.334 5.334 18 C -0.351 4.351 19 H 0.085 0.915 20 C -0.228 4.228 21 N -0.607 5.607 22 Si 0.759 3.241 23 H -0.221 1.221 24 H -0.248 1.248 25 H -0.178 1.178 26 C -0.019 4.019 27 O 0.051 5.949 28 N -0.123 5.123 29 H 0.124 0.876 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.218 0.782 35 H 0.252 0.748 36 H 0.110 0.890 37 H 0.112 0.888 38 H 0.116 0.884 39 H 0.076 0.924 40 H 0.099 0.901 41 H 0.053 0.947 42 H 0.060 0.940 43 H 0.063 0.937 44 H 0.060 0.940 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -3.893 -6.819 -16.755 18.503 hybrid contribution -0.401 1.347 1.018 1.735 sum -4.293 -5.472 -15.737 17.205 Atomic orbital electron populations 1.21827 0.89756 1.04778 1.03798 1.23155 0.97757 0.79255 1.02553 1.86230 1.11977 1.32175 1.89092 1.21893 0.86457 0.90261 1.00403 1.22382 0.89982 0.99969 1.06014 1.23974 0.96656 0.84381 1.06857 1.16572 0.81918 0.85760 0.77125 1.90830 1.85443 1.14174 1.52308 1.45753 1.04115 1.11678 1.70908 1.21631 0.85591 0.93823 0.96547 0.88904 1.21724 0.95892 0.97499 0.99637 1.22012 1.02371 0.97278 0.94808 1.20840 0.89178 0.91500 0.93096 0.94152 1.21748 1.01010 0.96813 0.99305 1.44542 1.38725 1.28314 1.21805 1.18835 1.27952 0.92834 0.95448 0.91450 1.25810 0.99340 1.00613 0.97052 1.69934 1.30581 1.33889 1.26259 0.86192 0.79763 0.83549 0.74610 1.22077 1.24840 1.17759 1.21775 0.97523 0.89867 0.92734 1.84924 1.22900 1.18387 1.68641 1.73927 0.90544 1.22391 1.25479 0.87561 0.91524 0.90873 0.90958 0.91987 0.78201 0.74827 0.89034 0.88779 0.88412 0.92351 0.90138 0.94714 0.94012 0.93682 0.93989 0.94166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 10.28 71.98 0.74 -1.20 16 2 C 0.05 0.95 6.38 71.98 0.46 1.41 16 3 O -0.29 -7.74 10.21 -90.54 -0.92 -8.66 16 4 C 0.21 6.33 8.00 85.78 0.69 7.01 16 5 C -0.16 -5.01 10.97 22.80 0.25 -4.76 16 6 C -0.05 -1.75 7.29 24.36 0.18 -1.57 16 7 C 0.60 21.83 7.79 86.70 0.68 22.51 16 8 O -0.55 -22.96 16.57 -3.97 -0.07 -23.02 16 9 N -0.67 -21.61 4.91 -445.32 -2.19 -23.80 16 10 C 0.13 4.02 2.81 45.07 0.13 4.14 16 11 H 0.09 2.80 7.58 -2.39 -0.02 2.79 16 12 C -0.11 -2.39 5.59 30.63 0.17 -2.22 16 13 C -0.13 -2.94 5.21 30.67 0.16 -2.78 16 14 C 0.16 5.16 3.49 44.97 0.16 5.32 16 15 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 16 C -0.13 -4.25 7.95 71.98 0.57 -3.68 16 17 N -0.61 -26.10 2.67 -675.23 -1.80 -27.90 16 18 C -0.22 -11.85 9.05 84.03 0.76 -11.09 16 19 H 0.07 3.90 6.40 -2.91 -0.02 3.88 16 20 C -0.03 -2.01 5.24 84.86 0.44 -1.56 16 21 N -0.96 -61.37 13.97 21.65 0.30 -61.06 16 22 Si 0.93 48.30 24.34 68.60 1.67 49.97 16 23 H -0.29 -15.46 6.62 99.48 0.66 -14.80 16 24 H -0.32 -17.12 7.11 99.48 0.71 -16.42 16 25 H -0.25 -12.22 6.63 99.48 0.66 -11.56 16 26 C 0.11 4.40 3.80 86.36 0.33 4.73 16 27 O 0.12 3.74 11.03 65.69 0.72 4.47 16 28 N -0.40 -12.63 11.50 -172.04 -1.98 -14.61 16 29 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 34 H 0.20 5.53 8.06 -2.91 -0.02 5.51 16 35 H 0.41 11.91 6.60 -92.71 -0.61 11.30 16 36 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.06 1.43 6.40 -2.38 -0.02 1.41 16 40 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.03 1.30 7.65 -2.39 -0.02 1.28 16 42 H 0.04 1.46 7.43 -2.38 -0.02 1.44 16 43 H 0.25 15.85 8.31 -92.71 -0.77 15.08 16 44 H 0.04 1.67 7.03 -2.39 -0.02 1.65 16 45 H 0.04 2.00 4.62 -2.38 -0.01 1.99 16 Total: -1.00 -73.09 360.89 1.76 -71.33 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: 0.31 Total: 17.04 kcal Atomic # 6 Polarization: 10.55 SS G_CDS: 5.71 Total: 16.25 kcal Atomic # 7 Polarization: -121.71 SS G_CDS: -5.66 Total: -127.38 kcal Atomic # 8 Polarization: -26.95 SS G_CDS: -0.27 Total: -27.21 kcal Atomic # 14 Polarization: 48.30 SS G_CDS: 1.67 Total: 49.97 kcal Total: -73.09 1.76 -71.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071689058.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.702 kcal (2) G-P(sol) polarization free energy of solvation -73.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds