Wall clock time and date at job start Tue Mar 31 2020 14:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42893 * 114.00049 * 2 1 4 4 C 1.50697 * 109.47573 * 179.97438 * 3 2 1 5 5 C 1.35316 * 126.66403 * 89.99294 * 4 3 2 6 6 C 1.42271 * 103.92642 * 179.74329 * 5 4 3 7 7 C 1.48322 * 126.94384 * 180.26313 * 6 5 4 8 8 O 1.21502 * 120.00191 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00127 * 180.02562 * 7 6 5 10 10 C 1.46502 * 120.00016 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.49585 * 34.93570 * 10 9 7 12 12 C 1.53039 * 109.49899 * 154.99793 * 10 9 7 13 13 C 1.53045 * 109.53513 * 58.58763 * 12 10 9 14 14 C 1.53189 * 109.31114 * 61.36675 * 13 12 10 15 15 H 1.08995 * 109.58657 * 65.29401 * 14 13 12 16 16 C 1.53008 * 109.58527 * 185.57585 * 14 13 12 17 17 N 1.46924 * 108.77324 * 305.36164 * 14 13 12 18 18 C 1.36945 * 120.62890 * 233.58640 * 17 14 13 19 19 H 1.07991 * 119.99981 * 29.02230 * 18 17 14 20 20 C 1.38814 * 119.99494 * 209.02512 * 18 17 14 21 21 N 1.31611 * 120.00395 * 15.02765 * 20 18 17 22 22 Si 1.86803 * 119.99542 * 195.03471 * 20 18 17 23 23 H 1.48501 * 109.47319 * 59.99387 * 22 20 18 24 24 H 1.48495 * 109.47383 * 180.02562 * 22 20 18 25 25 H 1.48509 * 109.46871 * 299.99959 * 22 20 18 26 26 C 1.46924 * 118.74128 * 53.61626 * 17 14 13 27 27 N 1.30995 * 106.11743 * 0.26303 * 6 5 4 28 28 O 1.20902 * 111.44026 * 359.97438 * 27 6 5 29 29 H 1.09004 * 109.46956 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47625 * 300.00271 * 1 2 3 31 31 H 1.08998 * 109.46674 * 60.00418 * 1 2 3 32 32 H 1.09004 * 109.47399 * 59.99449 * 3 2 1 33 33 H 1.09005 * 109.47409 * 299.99555 * 3 2 1 34 34 H 1.08007 * 128.04251 * 0.02562 * 5 4 3 35 35 H 0.96995 * 120.00143 * 359.97438 * 9 7 6 36 36 H 1.09003 * 109.46340 * 178.60577 * 12 10 9 37 37 H 1.08997 * 109.46511 * 298.58294 * 12 10 9 38 38 H 1.09004 * 109.49543 * 181.31559 * 13 12 10 39 39 H 1.08997 * 109.49753 * 301.41388 * 13 12 10 40 40 H 1.09001 * 109.46890 * 59.99718 * 16 14 13 41 41 H 1.08990 * 109.47082 * 179.97438 * 16 14 13 42 42 H 1.09000 * 109.47012 * 300.00063 * 16 14 13 43 43 H 0.97001 * 120.00050 * 179.97438 * 21 20 18 44 44 H 1.08995 * 109.59248 * 186.60186 * 26 17 14 45 45 H 1.08999 * 109.58667 * 66.17122 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.3184 1.1224 -1.0845 6 6 5.6267 1.0253 -0.5340 7 6 6.9040 0.9320 -1.2822 8 8 6.8979 0.9336 -2.4972 9 7 8.0714 0.8446 -0.6144 10 6 9.3330 0.7519 -1.3534 11 1 9.2660 1.3481 -2.2635 12 6 10.4756 1.2774 -0.4815 13 6 10.5489 0.4625 0.8119 14 6 10.8353 -1.0034 0.4714 15 1 11.8262 -1.0881 0.0256 16 6 10.7724 -1.8477 1.7459 17 7 9.8212 -1.4742 -0.4819 18 6 9.0914 -2.6037 -0.2230 19 1 8.8874 -2.8927 0.7973 20 6 8.6139 -3.3771 -1.2722 21 7 9.0950 -3.2091 -2.4857 22 14 7.2884 -4.6562 -0.9618 23 1 6.0742 -3.9906 -0.4250 24 1 6.9550 -5.3428 -2.2355 25 1 7.7827 -5.6524 0.0224 26 6 9.6055 -0.7107 -1.7184 27 7 5.4755 1.0347 0.7671 28 8 4.3097 1.1208 1.0759 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6887 1.8463 -0.8900 34 1 4.0349 1.1450 -2.1264 35 1 8.0763 0.8430 0.3555 36 1 11.4173 1.1853 -1.0226 37 1 10.2963 2.3252 -0.2405 38 1 11.3478 0.8522 1.4427 39 1 9.5988 0.5341 1.3413 40 1 9.7792 -1.7656 2.1874 41 1 10.9759 -2.8902 1.5015 42 1 11.5167 -1.4887 2.4566 43 1 8.7616 -3.7498 -3.2188 44 1 8.7494 -1.1189 -2.2554 45 1 10.4953 -0.7712 -2.3452 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071873248.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:44 Heat of formation + Delta-G solvation = 9.333930 kcal Electronic energy + Delta-G solvation = -28532.185623 eV Core-core repulsion = 24554.362779 eV Total energy + Delta-G solvation = -3977.822844 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -45.01861 -39.46211 -38.25157 -37.56349 -34.17729 -33.92977 -32.85727 -32.59583 -30.58670 -29.84517 -27.99211 -26.36238 -25.87833 -25.11682 -24.27854 -22.60573 -22.14785 -20.59239 -20.05685 -18.72629 -17.94950 -17.84046 -16.75322 -16.53598 -16.23477 -16.13512 -15.52254 -15.06224 -14.96840 -14.30704 -14.03012 -13.88228 -13.77186 -13.44649 -13.20176 -13.12752 -12.81950 -12.53655 -12.44590 -11.91915 -11.83970 -11.50858 -11.23241 -11.13652 -10.94121 -10.85942 -10.65989 -10.35771 -10.34285 -10.27639 -10.12345 -9.93415 -9.79269 -9.64803 -9.48483 -9.43393 -8.43346 -8.40787 -6.57135 -5.71034 -3.14850 1.16228 1.69382 2.78424 3.33550 3.42461 3.48926 3.50969 3.65605 3.72814 4.15165 4.48856 4.54711 4.70647 4.90848 4.98265 5.02807 5.08334 5.32973 5.35907 5.36831 5.38951 5.41832 5.51128 5.53024 5.62317 5.87589 6.02407 6.12727 6.16423 6.34685 6.37792 6.45670 6.52089 6.63201 6.67476 6.67766 6.87491 7.07203 7.14513 7.36990 7.69676 7.87115 7.91444 8.14902 8.52718 8.61955 9.27562 9.91846 10.47334 11.36997 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.011657 B = 0.004405 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.354630 B = 6354.254696 C = 7510.302058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.148 3.852 4 C -0.051 4.051 5 C -0.153 4.153 6 C -0.016 4.016 7 C 0.595 3.405 8 O -0.529 6.529 9 N -0.681 5.681 10 C 0.116 3.884 11 H 0.079 0.921 12 C -0.118 4.118 13 C -0.132 4.132 14 C 0.166 3.834 15 H 0.026 0.974 16 C -0.136 4.136 17 N -0.583 5.583 18 C -0.250 4.250 19 H 0.067 0.933 20 C 0.007 3.993 21 N -0.900 5.900 22 Si 0.895 3.105 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.283 1.283 26 C 0.161 3.839 27 N -0.322 5.322 28 O 0.128 5.872 29 H 0.091 0.909 30 H 0.045 0.955 31 H 0.045 0.955 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.182 0.818 35 H 0.402 0.598 36 H 0.073 0.927 37 H 0.052 0.948 38 H 0.054 0.946 39 H 0.055 0.945 40 H 0.052 0.948 41 H 0.060 0.940 42 H 0.037 0.963 43 H 0.254 0.746 44 H 0.098 0.902 45 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.443 12.545 6.080 18.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.302 6.302 3 C 0.071 3.929 4 C -0.114 4.114 5 C -0.175 4.175 6 C -0.175 4.175 7 C 0.378 3.622 8 O -0.405 6.405 9 N -0.331 5.331 10 C 0.011 3.989 11 H 0.097 0.903 12 C -0.156 4.156 13 C -0.172 4.172 14 C 0.059 3.941 15 H 0.043 0.957 16 C -0.193 4.193 17 N -0.306 5.306 18 C -0.380 4.380 19 H 0.085 0.915 20 C -0.192 4.192 21 N -0.544 5.544 22 Si 0.725 3.275 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.209 1.209 26 C 0.034 3.966 27 N -0.022 5.022 28 O 0.050 5.950 29 H 0.109 0.891 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.095 0.905 33 H 0.105 0.895 34 H 0.199 0.801 35 H 0.237 0.763 36 H 0.092 0.908 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.079 0.921 42 H 0.056 0.944 43 H 0.064 0.936 44 H 0.116 0.884 45 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -10.412 12.185 6.029 17.123 hybrid contribution -1.266 -0.607 -0.209 1.419 sum -11.677 11.577 5.820 17.443 Atomic orbital electron populations 1.22812 0.79911 1.03472 1.00268 1.88032 1.20368 1.26320 1.95506 1.20608 0.83247 0.86145 1.02924 1.23856 0.94941 1.06575 0.85997 1.22487 0.89996 1.03557 1.01427 1.23714 0.97303 1.06596 0.89871 1.16741 0.81547 0.77585 0.86364 1.90776 1.86318 1.50975 1.12387 1.45735 1.05415 1.71416 1.10527 1.21917 0.81265 1.01584 0.94140 0.90314 1.21692 0.98470 0.98187 0.97270 1.22087 1.00615 0.98162 0.96301 1.20461 0.92191 0.90619 0.90837 0.95678 1.21797 1.00284 1.00830 0.96424 1.44034 1.40011 1.27052 1.19486 1.19049 1.26329 1.00307 0.92286 0.91496 1.25026 1.00168 0.97737 0.96274 1.69961 1.42625 1.41913 0.99917 0.86488 0.82536 0.81569 0.76923 1.21158 1.21598 1.20915 1.21207 1.01328 0.85540 0.88480 1.74177 0.96913 1.15162 1.15932 1.84769 1.11495 1.65495 1.33201 0.89083 0.93591 0.93602 0.90534 0.89453 0.80098 0.76267 0.90843 0.92960 0.92722 0.92656 0.92932 0.92051 0.94398 0.93625 0.88401 0.95384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.38 -4.22 10.69 -35.23 -0.38 -4.60 16 3 C 0.15 1.30 6.49 36.00 0.23 1.53 16 4 C -0.05 -0.65 7.10 -35.35 -0.25 -0.90 16 5 C -0.15 -2.28 10.92 -39.08 -0.43 -2.71 16 6 C -0.02 -0.28 7.19 -82.53 -0.59 -0.87 16 7 C 0.59 12.27 7.82 -12.11 -0.09 12.18 16 8 O -0.53 -12.22 16.61 5.36 0.09 -12.13 16 9 N -0.68 -13.32 4.91 -54.48 -0.27 -13.59 16 10 C 0.12 2.29 2.81 -67.81 -0.19 2.10 16 11 H 0.08 1.55 7.58 -51.93 -0.39 1.16 16 12 C -0.12 -1.92 5.59 -26.69 -0.15 -2.07 16 13 C -0.13 -2.21 5.21 -26.61 -0.14 -2.35 16 14 C 0.17 3.36 3.50 -67.60 -0.24 3.13 16 15 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 16 C -0.14 -2.56 7.95 37.16 0.30 -2.27 16 17 N -0.58 -14.26 2.91 -164.78 -0.48 -14.74 16 18 C -0.25 -6.83 8.61 -15.05 -0.13 -6.96 16 19 H 0.07 1.80 6.20 -52.49 -0.33 1.48 16 20 C 0.01 0.20 4.96 -17.43 -0.09 0.11 16 21 N -0.90 -26.89 11.14 55.49 0.62 -26.28 16 22 Si 0.89 22.88 29.58 -169.99 -5.03 17.85 16 23 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 24 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 25 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 26 C 0.16 3.92 4.89 -3.71 -0.02 3.90 16 27 N -0.32 -5.53 11.84 33.30 0.39 -5.14 16 28 O 0.13 1.90 11.18 17.25 0.19 2.09 16 29 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.18 2.38 8.06 -52.48 -0.42 1.96 16 35 H 0.40 7.49 6.53 -40.82 -0.27 7.22 16 36 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.05 0.95 6.40 -51.93 -0.33 0.61 16 40 H 0.05 1.01 7.40 -51.93 -0.38 0.63 16 41 H 0.06 1.26 7.66 -51.93 -0.40 0.86 16 42 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 44 H 0.10 2.80 6.06 -51.93 -0.31 2.49 16 45 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 367.97 15.07 5.55 5.55 Total: -1.00 -33.54 367.97 -6.61 -40.15 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -6.62 Total: 4.70 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: -0.67 Total: 6.13 kcal Atomic # 7 Polarization: -60.01 SS G_CDS: 0.27 Total: -59.75 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: -0.09 Total: -14.63 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.03 Total: 17.85 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.54 -6.61 -40.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071873248.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.481 kcal (2) G-P(sol) polarization free energy of solvation -33.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds