Wall clock time and date at job start Tue Mar 31 2020 14:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42893 * 114.00049 * 2 1 4 4 C 1.50697 * 109.47573 * 179.97438 * 3 2 1 5 5 C 1.35316 * 126.66403 * 89.99294 * 4 3 2 6 6 C 1.42271 * 103.92642 * 179.74329 * 5 4 3 7 7 C 1.48322 * 126.94384 * 180.26313 * 6 5 4 8 8 O 1.21502 * 120.00191 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00127 * 180.02562 * 7 6 5 10 10 C 1.46502 * 120.00016 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.49585 * 34.93570 * 10 9 7 12 12 C 1.53039 * 109.49899 * 154.99793 * 10 9 7 13 13 C 1.53045 * 109.53513 * 58.58763 * 12 10 9 14 14 C 1.53189 * 109.31114 * 61.36675 * 13 12 10 15 15 H 1.08995 * 109.58657 * 65.29401 * 14 13 12 16 16 C 1.53008 * 109.58527 * 185.57585 * 14 13 12 17 17 N 1.46924 * 108.77324 * 305.36164 * 14 13 12 18 18 C 1.36945 * 120.62890 * 233.58640 * 17 14 13 19 19 H 1.07991 * 119.99981 * 29.02230 * 18 17 14 20 20 C 1.38814 * 119.99494 * 209.02512 * 18 17 14 21 21 N 1.31611 * 120.00395 * 15.02765 * 20 18 17 22 22 Si 1.86803 * 119.99542 * 195.03471 * 20 18 17 23 23 H 1.48501 * 109.47319 * 59.99387 * 22 20 18 24 24 H 1.48495 * 109.47383 * 180.02562 * 22 20 18 25 25 H 1.48509 * 109.46871 * 299.99959 * 22 20 18 26 26 C 1.46924 * 118.74128 * 53.61626 * 17 14 13 27 27 N 1.30995 * 106.11743 * 0.26303 * 6 5 4 28 28 O 1.20902 * 111.44026 * 359.97438 * 27 6 5 29 29 H 1.09004 * 109.46956 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47625 * 300.00271 * 1 2 3 31 31 H 1.08998 * 109.46674 * 60.00418 * 1 2 3 32 32 H 1.09004 * 109.47399 * 59.99449 * 3 2 1 33 33 H 1.09005 * 109.47409 * 299.99555 * 3 2 1 34 34 H 1.08007 * 128.04251 * 0.02562 * 5 4 3 35 35 H 0.96995 * 120.00143 * 359.97438 * 9 7 6 36 36 H 1.09003 * 109.46340 * 178.60577 * 12 10 9 37 37 H 1.08997 * 109.46511 * 298.58294 * 12 10 9 38 38 H 1.09004 * 109.49543 * 181.31559 * 13 12 10 39 39 H 1.08997 * 109.49753 * 301.41388 * 13 12 10 40 40 H 1.09001 * 109.46890 * 59.99718 * 16 14 13 41 41 H 1.08990 * 109.47082 * 179.97438 * 16 14 13 42 42 H 1.09000 * 109.47012 * 300.00063 * 16 14 13 43 43 H 0.97001 * 120.00050 * 179.97438 * 21 20 18 44 44 H 1.08995 * 109.59248 * 186.60186 * 26 17 14 45 45 H 1.08999 * 109.58667 * 66.17122 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.3184 1.1224 -1.0845 6 6 5.6267 1.0253 -0.5340 7 6 6.9040 0.9320 -1.2822 8 8 6.8979 0.9336 -2.4972 9 7 8.0714 0.8446 -0.6144 10 6 9.3330 0.7519 -1.3534 11 1 9.2660 1.3481 -2.2635 12 6 10.4756 1.2774 -0.4815 13 6 10.5489 0.4625 0.8119 14 6 10.8353 -1.0034 0.4714 15 1 11.8262 -1.0881 0.0256 16 6 10.7724 -1.8477 1.7459 17 7 9.8212 -1.4742 -0.4819 18 6 9.0914 -2.6037 -0.2230 19 1 8.8874 -2.8927 0.7973 20 6 8.6139 -3.3771 -1.2722 21 7 9.0950 -3.2091 -2.4857 22 14 7.2884 -4.6562 -0.9618 23 1 6.0742 -3.9906 -0.4250 24 1 6.9550 -5.3428 -2.2355 25 1 7.7827 -5.6524 0.0224 26 6 9.6055 -0.7107 -1.7184 27 7 5.4755 1.0347 0.7671 28 8 4.3097 1.1208 1.0759 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6887 1.8463 -0.8900 34 1 4.0349 1.1450 -2.1264 35 1 8.0763 0.8430 0.3555 36 1 11.4173 1.1853 -1.0226 37 1 10.2963 2.3252 -0.2405 38 1 11.3478 0.8522 1.4427 39 1 9.5988 0.5341 1.3413 40 1 9.7792 -1.7656 2.1874 41 1 10.9759 -2.8902 1.5015 42 1 11.5167 -1.4887 2.4566 43 1 8.7616 -3.7498 -3.2188 44 1 8.7494 -1.1189 -2.2554 45 1 10.4953 -0.7712 -2.3452 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071873248.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:44 Heat of formation + Delta-G solvation = -14.641462 kcal Electronic energy + Delta-G solvation = -28533.225274 eV Core-core repulsion = 24554.362779 eV Total energy + Delta-G solvation = -3978.862495 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -46.26363 -41.09047 -39.23936 -38.93263 -35.91826 -35.20153 -34.59122 -33.82689 -32.14795 -31.75850 -28.73004 -28.01974 -27.01070 -26.53795 -25.70269 -23.96644 -23.80805 -22.20261 -21.50077 -20.44746 -19.09548 -19.02315 -18.35618 -17.97716 -17.24952 -17.22688 -16.77941 -16.62963 -16.17982 -16.04274 -15.73199 -15.56500 -15.10650 -14.86874 -14.75434 -14.50481 -14.12026 -13.85160 -13.70678 -13.23106 -13.04856 -12.91488 -12.67383 -12.65576 -12.61323 -12.45912 -12.39697 -12.17432 -12.14123 -11.64021 -11.61006 -11.44993 -11.23677 -11.10665 -10.76393 -10.71792 -10.56215 -10.11903 -8.61007 -7.86132 -5.30531 -0.04961 0.46311 1.34789 1.39301 1.43217 1.75363 1.88238 2.15472 2.45712 2.82417 3.00820 3.29242 3.49575 3.59578 3.79427 3.93041 4.01731 4.05053 4.10450 4.14741 4.40372 4.43693 4.49730 4.55739 4.59282 4.65263 4.69575 4.75653 4.76681 4.91553 4.93384 4.98319 5.02175 5.06773 5.21391 5.27605 5.50993 5.53723 5.59921 5.68863 5.70033 6.11052 6.36919 6.40834 6.88060 7.05041 7.15469 7.89576 8.39252 9.18833 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.011657 B = 0.004405 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.354630 B = 6354.254696 C = 7510.302058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.422 6.422 3 C 0.146 3.854 4 C -0.028 4.028 5 C -0.169 4.169 6 C -0.047 4.047 7 C 0.589 3.411 8 O -0.564 6.564 9 N -0.675 5.675 10 C 0.124 3.876 11 H 0.076 0.924 12 C -0.110 4.110 13 C -0.122 4.122 14 C 0.154 3.846 15 H 0.021 0.979 16 C -0.128 4.128 17 N -0.596 5.596 18 C -0.240 4.240 19 H 0.071 0.929 20 C -0.050 4.050 21 N -0.933 5.933 22 Si 0.946 3.054 23 H -0.292 1.292 24 H -0.296 1.296 25 H -0.269 1.269 26 C 0.170 3.830 27 N -0.335 5.335 28 O 0.139 5.861 29 H 0.089 0.911 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.108 0.892 33 H 0.119 0.881 34 H 0.193 0.807 35 H 0.407 0.593 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.053 0.947 40 H 0.045 0.955 41 H 0.036 0.964 42 H 0.077 0.923 43 H 0.244 0.756 44 H 0.049 0.951 45 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.507 14.382 8.524 20.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.342 6.342 3 C 0.070 3.930 4 C -0.092 4.092 5 C -0.191 4.191 6 C -0.204 4.204 7 C 0.373 3.627 8 O -0.443 6.443 9 N -0.325 5.325 10 C 0.018 3.982 11 H 0.094 0.906 12 C -0.148 4.148 13 C -0.160 4.160 14 C 0.049 3.951 15 H 0.039 0.961 16 C -0.186 4.186 17 N -0.320 5.320 18 C -0.371 4.371 19 H 0.088 0.912 20 C -0.245 4.245 21 N -0.580 5.580 22 Si 0.775 3.225 23 H -0.219 1.219 24 H -0.223 1.223 25 H -0.194 1.194 26 C 0.043 3.957 27 N -0.033 5.033 28 O 0.058 5.942 29 H 0.108 0.892 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.126 0.874 33 H 0.137 0.863 34 H 0.210 0.790 35 H 0.244 0.756 36 H 0.101 0.899 37 H 0.104 0.896 38 H 0.112 0.888 39 H 0.072 0.928 40 H 0.064 0.936 41 H 0.055 0.945 42 H 0.096 0.904 43 H 0.053 0.947 44 H 0.067 0.933 45 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges -11.443 14.034 8.526 20.015 hybrid contribution -0.985 -1.155 -0.902 1.766 sum -12.428 12.879 7.624 19.453 Atomic orbital electron populations 1.23010 0.77773 1.04081 1.02051 1.87958 1.22732 1.27551 1.95915 1.20999 0.80010 0.86007 1.06018 1.24590 0.96601 1.03598 0.84381 1.22724 0.89098 1.04538 1.02758 1.23555 0.97241 1.09034 0.90616 1.17154 0.82621 0.76708 0.86229 1.90741 1.87029 1.52579 1.13933 1.45705 1.05216 1.70913 1.10702 1.21712 0.82914 0.98214 0.95343 0.90636 1.21680 0.96989 0.99723 0.96365 1.21978 1.01945 0.95221 0.96902 1.20775 0.90671 0.93367 0.90306 0.96124 1.21723 1.01143 0.99266 0.96440 1.44244 1.41129 1.26544 1.20041 1.19338 1.25252 1.00304 0.92161 0.91158 1.25657 1.02445 1.00045 0.96394 1.70121 1.44224 1.43159 1.00449 0.85659 0.80215 0.80015 0.76586 1.21910 1.22279 1.19416 1.20889 0.98278 0.88375 0.88142 1.74153 0.98172 1.15543 1.15430 1.84732 1.11064 1.64502 1.33855 0.89202 0.91682 0.91900 0.87394 0.86347 0.78975 0.75597 0.89930 0.89636 0.88815 0.92801 0.93621 0.94497 0.90406 0.94658 0.93270 0.97578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 113.37 1.25 1.53 16 2 O -0.42 -8.28 10.69 -148.98 -1.59 -9.87 16 3 C 0.15 2.08 6.49 71.24 0.46 2.55 16 4 C -0.03 -0.68 7.10 25.01 0.18 -0.50 16 5 C -0.17 -4.97 10.92 22.60 0.25 -4.72 16 6 C -0.05 -1.71 7.19 42.96 0.31 -1.40 16 7 C 0.59 24.95 7.82 86.93 0.68 25.63 16 8 O -0.56 -27.26 16.61 -3.72 -0.06 -27.32 16 9 N -0.68 -26.56 4.91 -444.57 -2.18 -28.74 16 10 C 0.12 4.89 2.81 45.07 0.13 5.02 16 11 H 0.08 3.04 7.58 -2.39 -0.02 3.02 16 12 C -0.11 -3.30 5.59 30.62 0.17 -3.12 16 13 C -0.12 -3.67 5.21 30.67 0.16 -3.51 16 14 C 0.15 6.04 3.50 44.98 0.16 6.19 16 15 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 16 C -0.13 -4.59 7.95 71.98 0.57 -4.02 16 17 N -0.60 -29.56 2.91 -675.24 -1.96 -31.52 16 18 C -0.24 -13.34 8.61 84.03 0.72 -12.61 16 19 H 0.07 3.81 6.20 -2.92 -0.02 3.79 16 20 C -0.05 -2.96 4.96 84.86 0.42 -2.54 16 21 N -0.93 -58.43 11.14 21.65 0.24 -58.19 16 22 Si 0.95 48.38 29.58 68.60 2.03 50.41 16 23 H -0.29 -15.10 7.11 99.48 0.71 -14.39 16 24 H -0.30 -15.34 7.11 99.48 0.71 -14.63 16 25 H -0.27 -12.97 7.11 99.48 0.71 -12.27 16 26 C 0.17 8.59 4.89 86.36 0.42 9.02 16 27 N -0.34 -11.31 11.84 -49.50 -0.59 -11.90 16 28 O 0.14 3.91 11.18 71.89 0.80 4.72 16 29 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 30 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.11 0.89 8.14 -2.38 -0.02 0.87 16 33 H 0.12 0.98 8.14 -2.38 -0.02 0.96 16 34 H 0.19 5.02 8.06 -2.91 -0.02 5.00 16 35 H 0.41 14.91 6.53 -92.71 -0.61 14.31 16 36 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 37 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.09 2.20 8.14 -2.38 -0.02 2.18 16 39 H 0.05 1.67 6.40 -2.39 -0.02 1.66 16 40 H 0.04 1.68 7.40 -2.39 -0.02 1.66 16 41 H 0.04 1.47 7.66 -2.39 -0.02 1.45 16 42 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 43 H 0.24 15.14 8.31 -92.71 -0.77 14.37 16 44 H 0.05 2.98 6.06 -2.39 -0.01 2.96 16 45 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 Total: -1.00 -77.46 367.97 2.97 -74.49 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: 0.41 Total: 20.43 kcal Atomic # 6 Polarization: 11.62 SS G_CDS: 5.88 Total: 17.50 kcal Atomic # 7 Polarization: -125.86 SS G_CDS: -4.49 Total: -130.36 kcal Atomic # 8 Polarization: -31.62 SS G_CDS: -0.85 Total: -32.47 kcal Atomic # 14 Polarization: 48.38 SS G_CDS: 2.03 Total: 50.41 kcal Total: -77.46 2.97 -74.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071873248.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.853 kcal (2) G-P(sol) polarization free energy of solvation -77.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds