Wall clock time and date at job start Tue Mar 31 2020 14:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42899 * 114.00476 * 2 1 4 4 C 1.50696 * 109.47297 * 179.97438 * 3 2 1 5 5 C 1.35314 * 126.66492 * 90.28790 * 4 3 2 6 6 C 1.42273 * 103.92272 * 180.08600 * 5 4 3 7 7 C 1.48330 * 126.93928 * 179.91124 * 6 5 4 8 8 O 1.21497 * 119.99746 * 359.70902 * 7 6 5 9 9 N 1.34774 * 120.00083 * 179.71083 * 7 6 5 10 10 C 1.46500 * 120.00029 * 179.97438 * 9 7 6 11 11 H 1.09007 * 109.52791 * 325.08121 * 10 9 7 12 12 C 1.53040 * 109.49829 * 205.00092 * 10 9 7 13 13 C 1.53041 * 109.53557 * 301.41173 * 12 10 9 14 14 C 1.53191 * 109.31394 * 298.63509 * 13 12 10 15 15 H 1.08999 * 109.58840 * 294.84801 * 14 13 12 16 16 C 1.53001 * 109.58229 * 174.56566 * 14 13 12 17 17 N 1.46921 * 108.77529 * 54.63545 * 14 13 12 18 18 C 1.36944 * 120.63036 * 126.36522 * 17 14 13 19 19 H 1.07995 * 119.99899 * 330.20373 * 18 17 14 20 20 C 1.38810 * 119.99902 * 150.20045 * 18 17 14 21 21 N 1.31620 * 119.99942 * 344.48280 * 20 18 17 22 22 Si 1.86795 * 119.99872 * 164.47877 * 20 18 17 23 23 H 1.48509 * 109.47049 * 90.00392 * 22 20 18 24 24 H 1.48497 * 109.47148 * 209.99933 * 22 20 18 25 25 H 1.48495 * 109.47222 * 330.00437 * 22 20 18 26 26 C 1.46922 * 118.74212 * 306.39104 * 17 14 13 27 27 N 1.30980 * 106.12281 * 359.64644 * 6 5 4 28 28 O 1.20907 * 111.44154 * 0.22615 * 27 6 5 29 29 H 1.08999 * 109.47320 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46877 * 299.99785 * 1 2 3 31 31 H 1.09002 * 109.47080 * 59.99801 * 1 2 3 32 32 H 1.09010 * 109.46901 * 60.00055 * 3 2 1 33 33 H 1.09004 * 109.47141 * 300.00381 * 3 2 1 34 34 H 1.08000 * 128.03882 * 359.96782 * 5 4 3 35 35 H 0.96997 * 119.99769 * 0.02562 * 9 7 6 36 36 H 1.09006 * 109.45988 * 181.39397 * 12 10 9 37 37 H 1.08993 * 109.46244 * 61.43387 * 12 10 9 38 38 H 1.09000 * 109.49464 * 178.68266 * 13 12 10 39 39 H 1.08999 * 109.49496 * 58.58784 * 13 12 10 40 40 H 1.09000 * 109.47456 * 60.28581 * 16 14 13 41 41 H 1.09001 * 109.46694 * 180.28450 * 16 14 13 42 42 H 1.09003 * 109.47396 * 300.27919 * 16 14 13 43 43 H 0.97005 * 119.99905 * 180.02562 * 21 20 18 44 44 H 1.08998 * 109.58561 * 293.82693 * 26 17 14 45 45 H 1.08994 * 109.70847 * 173.46612 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1863 0.0006 5 6 4.3189 1.1277 -1.0844 6 6 5.6263 1.0193 -0.5339 7 6 6.9031 0.9191 -1.2821 8 8 6.8968 0.9195 -2.4971 9 7 8.0701 0.8275 -0.6143 10 6 9.3312 0.7279 -1.3533 11 1 9.1750 0.1499 -2.2642 12 6 10.3805 0.0340 -0.4818 13 6 10.5768 0.8273 0.8122 14 6 11.0827 2.2329 0.4730 15 1 12.0740 2.1662 0.0249 16 6 11.1521 3.0746 1.7488 17 7 10.1522 2.8533 -0.4798 18 6 9.6017 4.0799 -0.2195 19 1 9.4318 4.3899 0.8010 20 6 9.2623 4.9248 -1.2672 21 7 9.7348 4.6985 -2.4746 22 14 8.1347 6.3827 -0.9636 23 1 8.9483 7.5700 -0.5978 24 1 7.3599 6.6744 -2.1963 25 1 7.1996 6.0629 0.1448 26 6 9.8229 2.1324 -1.7170 27 7 5.4753 1.0317 0.7671 28 8 4.3099 1.1238 1.0760 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8900 32 1 1.6886 1.8464 0.8901 33 1 1.6886 1.8464 -0.8900 34 1 4.0356 1.1548 -2.1263 35 1 8.0751 0.8267 0.3557 36 1 11.3254 -0.0176 -1.0229 37 1 10.0441 -0.9746 -0.2420 38 1 11.3071 0.3200 1.4426 39 1 9.6268 0.9004 1.3416 40 1 11.8384 2.6077 2.4553 41 1 11.5074 4.0757 1.5046 42 1 10.1599 3.1401 2.1953 43 1 9.4979 5.2891 -3.2068 44 1 10.7116 2.0575 -2.3437 45 1 9.0398 2.6657 -2.2558 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071873250.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:51 Heat of formation + Delta-G solvation = 8.401885 kcal Electronic energy + Delta-G solvation = -28448.174570 eV Core-core repulsion = 24470.311310 eV Total energy + Delta-G solvation = -3977.863261 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -45.02451 -39.46986 -38.29032 -37.57050 -34.18488 -33.93631 -32.86752 -32.60448 -30.59102 -29.87228 -28.02130 -26.37439 -25.90256 -25.12570 -24.28522 -22.61232 -22.16527 -20.60104 -20.06504 -18.73748 -17.94459 -17.87089 -16.76107 -16.55721 -16.24996 -16.16452 -15.53647 -15.08365 -14.97720 -14.32410 -14.04928 -13.89615 -13.78327 -13.45622 -13.22101 -13.13762 -12.83418 -12.55518 -12.46071 -11.94626 -11.88189 -11.51729 -11.24332 -11.14580 -10.97673 -10.86374 -10.69415 -10.37798 -10.35254 -10.28724 -10.16257 -9.95417 -9.80182 -9.65179 -9.49900 -9.44340 -8.44539 -8.43011 -6.57638 -5.73697 -3.17428 1.15788 1.69411 2.75377 3.34913 3.38143 3.45608 3.46948 3.59431 3.72907 4.14275 4.48460 4.51842 4.70942 4.90175 4.96023 5.00406 5.07391 5.30298 5.31817 5.35518 5.37959 5.41236 5.50568 5.52206 5.61207 5.87113 6.01781 6.12310 6.15828 6.34359 6.37027 6.45244 6.51416 6.62313 6.62640 6.66591 6.86581 7.06340 7.13783 7.35216 7.66614 7.85529 7.90269 8.14258 8.50759 8.61231 9.25254 9.89624 10.46024 11.34597 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012748 B = 0.004042 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.813130 B = 6925.949582 C = 7901.898148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.147 3.853 4 C -0.050 4.050 5 C -0.153 4.153 6 C -0.016 4.016 7 C 0.595 3.405 8 O -0.529 6.529 9 N -0.681 5.681 10 C 0.116 3.884 11 H 0.079 0.921 12 C -0.118 4.118 13 C -0.132 4.132 14 C 0.166 3.834 15 H 0.026 0.974 16 C -0.136 4.136 17 N -0.582 5.582 18 C -0.249 4.249 19 H 0.067 0.933 20 C 0.006 3.994 21 N -0.899 5.899 22 Si 0.894 3.106 23 H -0.287 1.287 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.162 3.838 27 N -0.322 5.322 28 O 0.128 5.872 29 H 0.090 0.910 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.182 0.818 35 H 0.402 0.598 36 H 0.073 0.927 37 H 0.052 0.948 38 H 0.054 0.946 39 H 0.055 0.945 40 H 0.037 0.963 41 H 0.061 0.939 42 H 0.051 0.949 43 H 0.253 0.747 44 H 0.029 0.971 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.203 -9.669 6.072 17.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.304 6.304 3 C 0.070 3.930 4 C -0.113 4.113 5 C -0.175 4.175 6 C -0.175 4.175 7 C 0.378 3.622 8 O -0.405 6.405 9 N -0.331 5.331 10 C 0.011 3.989 11 H 0.097 0.903 12 C -0.156 4.156 13 C -0.172 4.172 14 C 0.059 3.941 15 H 0.043 0.957 16 C -0.193 4.193 17 N -0.306 5.306 18 C -0.379 4.379 19 H 0.084 0.916 20 C -0.192 4.192 21 N -0.543 5.543 22 Si 0.724 3.276 23 H -0.214 1.214 24 H -0.216 1.216 25 H -0.207 1.207 26 C 0.036 3.964 27 N -0.022 5.022 28 O 0.050 5.950 29 H 0.109 0.891 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.096 0.904 33 H 0.106 0.894 34 H 0.199 0.801 35 H 0.238 0.762 36 H 0.092 0.908 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.056 0.944 41 H 0.080 0.920 42 H 0.070 0.930 43 H 0.063 0.937 44 H 0.047 0.953 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -12.158 -9.794 6.025 16.734 hybrid contribution -1.127 1.140 -0.228 1.619 sum -13.285 -8.654 5.796 16.881 Atomic orbital electron populations 1.22809 0.79906 1.03343 1.00422 1.87976 1.20378 1.26523 1.95560 1.20619 0.83242 0.85954 1.03165 1.23824 0.94892 1.06570 0.85995 1.22484 0.89974 1.03615 1.01423 1.23714 0.97255 1.06654 0.89870 1.16742 0.81537 0.77595 0.86362 1.90776 1.86480 1.50814 1.12394 1.45734 1.05298 1.71525 1.10536 1.21913 0.81815 1.00991 0.94175 0.90298 1.21692 0.98948 0.97733 0.97262 1.22085 1.00628 0.98147 0.96301 1.20462 0.92458 0.90349 0.90837 0.95673 1.21791 1.00544 1.00555 0.96423 1.44023 1.49200 1.17906 1.19429 1.19062 1.34483 0.91987 0.92364 0.91553 1.25048 1.00337 0.97455 0.96408 1.69987 1.44922 1.38998 1.00380 0.86430 0.81020 0.83055 0.77104 1.21369 1.21592 1.20692 1.21169 0.99349 0.87441 0.88477 1.74178 0.96870 1.15184 1.15935 1.84774 1.11487 1.65516 1.33194 0.89147 0.93560 0.93554 0.90420 0.89350 0.80095 0.76248 0.90833 0.92928 0.92711 0.92652 0.94383 0.92040 0.92957 0.93689 0.95343 0.88670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.77 10.69 -35.23 -0.38 -4.14 16 3 C 0.15 1.28 6.49 36.00 0.23 1.51 16 4 C -0.05 -0.64 7.10 -35.35 -0.25 -0.89 16 5 C -0.15 -2.27 10.92 -39.07 -0.43 -2.70 16 6 C -0.02 -0.28 7.19 -82.53 -0.59 -0.87 16 7 C 0.60 12.22 7.82 -12.11 -0.09 12.12 16 8 O -0.53 -12.18 16.62 5.37 0.09 -12.09 16 9 N -0.68 -13.27 4.91 -54.47 -0.27 -13.54 16 10 C 0.12 2.29 2.81 -67.81 -0.19 2.09 16 11 H 0.08 1.55 7.58 -51.93 -0.39 1.16 16 12 C -0.12 -1.93 5.59 -26.69 -0.15 -2.08 16 13 C -0.13 -2.21 5.21 -26.61 -0.14 -2.34 16 14 C 0.17 3.34 3.49 -67.60 -0.24 3.11 16 15 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 16 C -0.14 -2.53 7.95 37.16 0.30 -2.24 16 17 N -0.58 -14.12 2.90 -164.78 -0.48 -14.60 16 18 C -0.25 -6.72 8.58 -15.06 -0.13 -6.85 16 19 H 0.07 1.77 6.24 -52.49 -0.33 1.44 16 20 C 0.01 0.18 4.94 -17.43 -0.09 0.10 16 21 N -0.90 -26.58 11.23 55.49 0.62 -25.95 16 22 Si 0.89 22.33 29.58 -169.99 -5.03 17.30 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 25 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 26 C 0.16 3.92 4.88 -3.71 -0.02 3.90 16 27 N -0.32 -5.50 11.84 33.29 0.39 -5.11 16 28 O 0.13 1.89 11.18 17.24 0.19 2.08 16 29 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.21 8.14 -51.92 -0.42 -0.21 16 31 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.08 0.52 8.14 -51.92 -0.42 0.09 16 33 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.18 2.36 8.06 -52.49 -0.42 1.94 16 35 H 0.40 7.47 6.53 -40.82 -0.27 7.20 16 36 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.05 0.94 6.40 -51.93 -0.33 0.61 16 40 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.06 1.25 7.66 -51.93 -0.40 0.85 16 42 H 0.05 1.00 7.42 -51.93 -0.39 0.61 16 43 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 44 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.10 2.70 6.15 -51.93 -0.32 2.38 16 LS Contribution 368.17 15.07 5.55 5.55 Total: -1.00 -32.89 368.17 -6.61 -39.50 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -6.63 Total: 4.84 kcal Atomic # 6 Polarization: 6.83 SS G_CDS: -0.67 Total: 6.16 kcal Atomic # 7 Polarization: -59.47 SS G_CDS: 0.27 Total: -59.20 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: -0.09 Total: -14.15 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.03 Total: 17.30 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.89 -6.61 -39.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071873250.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.902 kcal (2) G-P(sol) polarization free energy of solvation -32.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds