Wall clock time and date at job start Tue Mar 31 2020 14:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42899 * 114.00476 * 2 1 4 4 C 1.50696 * 109.47297 * 179.97438 * 3 2 1 5 5 C 1.35314 * 126.66492 * 90.28790 * 4 3 2 6 6 C 1.42273 * 103.92272 * 180.08600 * 5 4 3 7 7 C 1.48330 * 126.93928 * 179.91124 * 6 5 4 8 8 O 1.21497 * 119.99746 * 359.70902 * 7 6 5 9 9 N 1.34774 * 120.00083 * 179.71083 * 7 6 5 10 10 C 1.46500 * 120.00029 * 179.97438 * 9 7 6 11 11 H 1.09007 * 109.52791 * 325.08121 * 10 9 7 12 12 C 1.53040 * 109.49829 * 205.00092 * 10 9 7 13 13 C 1.53041 * 109.53557 * 301.41173 * 12 10 9 14 14 C 1.53191 * 109.31394 * 298.63509 * 13 12 10 15 15 H 1.08999 * 109.58840 * 294.84801 * 14 13 12 16 16 C 1.53001 * 109.58229 * 174.56566 * 14 13 12 17 17 N 1.46921 * 108.77529 * 54.63545 * 14 13 12 18 18 C 1.36944 * 120.63036 * 126.36522 * 17 14 13 19 19 H 1.07995 * 119.99899 * 330.20373 * 18 17 14 20 20 C 1.38810 * 119.99902 * 150.20045 * 18 17 14 21 21 N 1.31620 * 119.99942 * 344.48280 * 20 18 17 22 22 Si 1.86795 * 119.99872 * 164.47877 * 20 18 17 23 23 H 1.48509 * 109.47049 * 90.00392 * 22 20 18 24 24 H 1.48497 * 109.47148 * 209.99933 * 22 20 18 25 25 H 1.48495 * 109.47222 * 330.00437 * 22 20 18 26 26 C 1.46922 * 118.74212 * 306.39104 * 17 14 13 27 27 N 1.30980 * 106.12281 * 359.64644 * 6 5 4 28 28 O 1.20907 * 111.44154 * 0.22615 * 27 6 5 29 29 H 1.08999 * 109.47320 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46877 * 299.99785 * 1 2 3 31 31 H 1.09002 * 109.47080 * 59.99801 * 1 2 3 32 32 H 1.09010 * 109.46901 * 60.00055 * 3 2 1 33 33 H 1.09004 * 109.47141 * 300.00381 * 3 2 1 34 34 H 1.08000 * 128.03882 * 359.96782 * 5 4 3 35 35 H 0.96997 * 119.99769 * 0.02562 * 9 7 6 36 36 H 1.09006 * 109.45988 * 181.39397 * 12 10 9 37 37 H 1.08993 * 109.46244 * 61.43387 * 12 10 9 38 38 H 1.09000 * 109.49464 * 178.68266 * 13 12 10 39 39 H 1.08999 * 109.49496 * 58.58784 * 13 12 10 40 40 H 1.09000 * 109.47456 * 60.28581 * 16 14 13 41 41 H 1.09001 * 109.46694 * 180.28450 * 16 14 13 42 42 H 1.09003 * 109.47396 * 300.27919 * 16 14 13 43 43 H 0.97005 * 119.99905 * 180.02562 * 21 20 18 44 44 H 1.08998 * 109.58561 * 293.82693 * 26 17 14 45 45 H 1.08994 * 109.70847 * 173.46612 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1863 0.0006 5 6 4.3189 1.1277 -1.0844 6 6 5.6263 1.0193 -0.5339 7 6 6.9031 0.9191 -1.2821 8 8 6.8968 0.9195 -2.4971 9 7 8.0701 0.8275 -0.6143 10 6 9.3312 0.7279 -1.3533 11 1 9.1750 0.1499 -2.2642 12 6 10.3805 0.0340 -0.4818 13 6 10.5768 0.8273 0.8122 14 6 11.0827 2.2329 0.4730 15 1 12.0740 2.1662 0.0249 16 6 11.1521 3.0746 1.7488 17 7 10.1522 2.8533 -0.4798 18 6 9.6017 4.0799 -0.2195 19 1 9.4318 4.3899 0.8010 20 6 9.2623 4.9248 -1.2672 21 7 9.7348 4.6985 -2.4746 22 14 8.1347 6.3827 -0.9636 23 1 8.9483 7.5700 -0.5978 24 1 7.3599 6.6744 -2.1963 25 1 7.1996 6.0629 0.1448 26 6 9.8229 2.1324 -1.7170 27 7 5.4753 1.0317 0.7671 28 8 4.3099 1.1238 1.0760 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8900 32 1 1.6886 1.8464 0.8901 33 1 1.6886 1.8464 -0.8900 34 1 4.0356 1.1548 -2.1263 35 1 8.0751 0.8267 0.3557 36 1 11.3254 -0.0176 -1.0229 37 1 10.0441 -0.9746 -0.2420 38 1 11.3071 0.3200 1.4426 39 1 9.6268 0.9004 1.3416 40 1 11.8384 2.6077 2.4553 41 1 11.5074 4.0757 1.5046 42 1 10.1599 3.1401 2.1953 43 1 9.4979 5.2891 -3.2068 44 1 10.7116 2.0575 -2.3437 45 1 9.0398 2.6657 -2.2558 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071873250.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:50 Heat of formation + Delta-G solvation = -14.828748 kcal Electronic energy + Delta-G solvation = -28449.181926 eV Core-core repulsion = 24470.311310 eV Total energy + Delta-G solvation = -3978.870616 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -46.26329 -41.09166 -39.23631 -38.91883 -35.91320 -35.20062 -34.57950 -33.82505 -32.14452 -31.76605 -28.72902 -28.01944 -26.99904 -26.52096 -25.70145 -23.96932 -23.80812 -22.20055 -21.50181 -20.44695 -19.07106 -19.04845 -18.34965 -17.97615 -17.24485 -17.19388 -16.77884 -16.63010 -16.17208 -16.03747 -15.72782 -15.56744 -15.10207 -14.86350 -14.75259 -14.50904 -14.11863 -13.85320 -13.70548 -13.23092 -13.02284 -12.93249 -12.67836 -12.64147 -12.57680 -12.46739 -12.39673 -12.17307 -12.13513 -11.63899 -11.60940 -11.45222 -11.23323 -11.10609 -10.75943 -10.71400 -10.55402 -10.11837 -8.59296 -7.85274 -5.30205 -0.04836 0.47295 1.36868 1.39211 1.46678 1.73320 1.91511 2.11821 2.47295 2.82460 2.99167 3.30205 3.49919 3.59816 3.79475 3.92596 4.01322 4.04916 4.10163 4.14491 4.40740 4.43406 4.49117 4.58677 4.59407 4.66091 4.69570 4.75743 4.76779 4.91399 4.95002 4.98310 5.02346 5.06694 5.21394 5.27264 5.50990 5.53914 5.59208 5.68782 5.70220 6.09247 6.36870 6.41922 6.88051 7.04985 7.16229 7.89931 8.40851 9.20183 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012748 B = 0.004042 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.813130 B = 6925.949582 C = 7901.898148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.414 6.414 3 C 0.147 3.853 4 C -0.027 4.027 5 C -0.169 4.169 6 C -0.046 4.046 7 C 0.589 3.411 8 O -0.565 6.565 9 N -0.675 5.675 10 C 0.124 3.876 11 H 0.075 0.925 12 C -0.110 4.110 13 C -0.121 4.121 14 C 0.154 3.846 15 H 0.020 0.980 16 C -0.128 4.128 17 N -0.595 5.595 18 C -0.240 4.240 19 H 0.070 0.930 20 C -0.052 4.052 21 N -0.933 5.933 22 Si 0.948 3.052 23 H -0.280 1.280 24 H -0.299 1.299 25 H -0.275 1.275 26 C 0.172 3.828 27 N -0.335 5.335 28 O 0.139 5.861 29 H 0.096 0.904 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.104 0.896 33 H 0.114 0.886 34 H 0.193 0.807 35 H 0.407 0.593 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.093 0.907 39 H 0.054 0.946 40 H 0.076 0.924 41 H 0.036 0.964 42 H 0.045 0.955 43 H 0.244 0.756 44 H 0.006 0.994 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.633 -10.802 8.527 20.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.334 6.334 3 C 0.070 3.930 4 C -0.091 4.091 5 C -0.191 4.191 6 C -0.204 4.204 7 C 0.373 3.627 8 O -0.443 6.443 9 N -0.325 5.325 10 C 0.018 3.982 11 H 0.093 0.907 12 C -0.148 4.148 13 C -0.160 4.160 14 C 0.049 3.951 15 H 0.038 0.962 16 C -0.185 4.185 17 N -0.319 5.319 18 C -0.371 4.371 19 H 0.088 0.912 20 C -0.247 4.247 21 N -0.580 5.580 22 Si 0.777 3.223 23 H -0.207 1.207 24 H -0.226 1.226 25 H -0.200 1.200 26 C 0.045 3.955 27 N -0.033 5.033 28 O 0.058 5.942 29 H 0.114 0.886 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.122 0.878 33 H 0.132 0.868 34 H 0.210 0.790 35 H 0.244 0.756 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.111 0.889 39 H 0.072 0.928 40 H 0.095 0.905 41 H 0.055 0.945 42 H 0.065 0.935 43 H 0.053 0.947 44 H 0.024 0.976 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -13.562 -10.948 8.535 19.407 hybrid contribution -0.734 1.455 -0.929 1.876 sum -14.296 -9.492 7.606 18.770 Atomic orbital electron populations 1.23022 0.77832 1.04292 1.01844 1.87921 1.22588 1.26967 1.95887 1.20933 0.80131 0.86230 1.05716 1.24535 0.96511 1.03621 0.84407 1.22713 0.89062 1.04598 1.02735 1.23546 0.97167 1.09072 0.90599 1.17152 0.82624 0.76694 0.86223 1.90741 1.87204 1.52405 1.13947 1.45702 1.05052 1.71072 1.10710 1.21707 0.82960 0.98199 0.95311 0.90719 1.21680 0.98000 0.98707 0.96421 1.21975 1.01450 0.95762 0.96847 1.20768 0.91393 0.92585 0.90372 0.96239 1.21716 1.01085 0.99356 0.96373 1.44229 1.50264 1.17469 1.19931 1.19348 1.32936 0.92539 0.92260 0.91204 1.25719 1.02328 1.00159 0.96479 1.70150 1.46823 1.40054 1.00997 0.85559 0.79474 0.80752 0.76509 1.20684 1.22607 1.19977 1.20849 0.96914 0.89583 0.88155 1.74155 0.98107 1.15577 1.15438 1.84738 1.11052 1.64539 1.33826 0.88561 0.92042 0.92196 0.87814 0.86811 0.78977 0.75576 0.89954 0.89756 0.88889 0.92766 0.90475 0.94457 0.93540 0.94674 0.97617 0.93434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 113.37 1.25 1.47 16 2 O -0.41 -7.01 10.69 -148.98 -1.59 -8.60 16 3 C 0.15 2.09 6.49 71.23 0.46 2.55 16 4 C -0.03 -0.65 7.10 25.01 0.18 -0.47 16 5 C -0.17 -4.93 10.92 22.60 0.25 -4.68 16 6 C -0.05 -1.67 7.19 42.96 0.31 -1.36 16 7 C 0.59 24.83 7.82 86.93 0.68 25.51 16 8 O -0.56 -27.16 16.62 -3.70 -0.06 -27.22 16 9 N -0.68 -26.46 4.91 -444.56 -2.18 -28.65 16 10 C 0.12 4.89 2.81 45.07 0.13 5.02 16 11 H 0.07 3.01 7.58 -2.38 -0.02 2.99 16 12 C -0.11 -3.33 5.59 30.62 0.17 -3.16 16 13 C -0.12 -3.67 5.21 30.67 0.16 -3.51 16 14 C 0.15 6.01 3.49 44.98 0.16 6.17 16 15 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 16 C -0.13 -4.53 7.95 71.98 0.57 -3.96 16 17 N -0.60 -29.25 2.90 -675.25 -1.96 -31.21 16 18 C -0.24 -13.16 8.58 84.03 0.72 -12.43 16 19 H 0.07 3.72 6.24 -2.91 -0.02 3.71 16 20 C -0.05 -3.00 4.94 84.86 0.42 -2.58 16 21 N -0.93 -57.82 11.23 21.65 0.24 -57.58 16 22 Si 0.95 47.04 29.58 68.60 2.03 49.07 16 23 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 24 H -0.30 -15.18 7.11 99.48 0.71 -14.47 16 25 H -0.27 -13.14 7.11 99.48 0.71 -12.43 16 26 C 0.17 8.63 4.88 86.37 0.42 9.05 16 27 N -0.34 -11.22 11.84 -49.52 -0.59 -11.81 16 28 O 0.14 3.88 11.18 71.85 0.80 4.68 16 29 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.06 0.35 8.14 -2.38 -0.02 0.33 16 31 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 33 H 0.11 1.08 8.14 -2.38 -0.02 1.06 16 34 H 0.19 4.98 8.06 -2.91 -0.02 4.96 16 35 H 0.41 14.87 6.53 -92.71 -0.61 14.26 16 36 H 0.08 2.39 8.14 -2.38 -0.02 2.37 16 37 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 39 H 0.05 1.68 6.40 -2.39 -0.02 1.67 16 40 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.04 1.47 7.66 -2.39 -0.02 1.46 16 42 H 0.05 1.68 7.42 -2.39 -0.02 1.66 16 43 H 0.24 14.91 8.31 -92.70 -0.77 14.14 16 44 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 45 H 0.05 2.85 6.15 -2.39 -0.01 2.83 16 Total: -1.00 -75.49 368.17 2.97 -72.52 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: 0.41 Total: 21.19 kcal Atomic # 6 Polarization: 11.73 SS G_CDS: 5.87 Total: 17.60 kcal Atomic # 7 Polarization: -124.76 SS G_CDS: -4.49 Total: -129.24 kcal Atomic # 8 Polarization: -30.29 SS G_CDS: -0.85 Total: -31.14 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 2.03 Total: 49.07 kcal Total: -75.49 2.97 -72.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071873250.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.690 kcal (2) G-P(sol) polarization free energy of solvation -75.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds