Wall clock time and date at job start Tue Mar 31 2020 14:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 114.00031 * 2 1 4 4 C 1.50704 * 109.47031 * 180.02562 * 3 2 1 5 5 N 1.29937 * 125.37859 * 89.99573 * 4 3 2 6 6 C 1.36069 * 108.47690 * 180.02562 * 5 4 3 7 7 C 1.47419 * 126.44819 * 179.97438 * 6 5 4 8 8 O 1.21608 * 119.99656 * 180.02562 * 7 6 5 9 9 N 1.34771 * 119.99978 * 0.03028 * 7 6 5 10 10 C 1.46503 * 120.00038 * 179.97438 * 9 7 6 11 11 H 1.08998 * 109.49647 * 34.93464 * 10 9 7 12 12 C 1.53044 * 109.49748 * 154.99407 * 10 9 7 13 13 C 1.53044 * 109.53536 * 58.58986 * 12 10 9 14 14 C 1.53191 * 109.31282 * 61.36383 * 13 12 10 15 15 H 1.08999 * 109.70834 * 65.22509 * 14 13 12 16 16 C 1.53000 * 109.58261 * 185.57801 * 14 13 12 17 17 N 1.46925 * 108.77514 * 305.35896 * 14 13 12 18 18 C 1.36935 * 120.63365 * 233.58727 * 17 14 13 19 19 H 1.07999 * 120.00221 * 29.97591 * 18 17 14 20 20 C 1.38817 * 119.99970 * 209.97357 * 18 17 14 21 21 N 1.31617 * 120.00045 * 15.41423 * 20 18 17 22 22 Si 1.86798 * 120.00091 * 195.68267 * 20 18 17 23 23 H 1.48506 * 109.46898 * 60.00345 * 22 20 18 24 24 H 1.48500 * 109.47236 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47242 * 300.00598 * 22 20 18 26 26 C 1.46931 * 118.73705 * 53.86846 * 17 14 13 27 27 C 1.36094 * 107.09951 * 0.22709 * 6 5 4 28 28 O 1.34049 * 125.37768 * 270.03516 * 4 3 2 29 29 H 1.09000 * 109.47202 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47004 * 300.00332 * 1 2 3 31 31 H 1.08994 * 109.46870 * 59.99977 * 1 2 3 32 32 H 1.08997 * 109.47231 * 60.00001 * 3 2 1 33 33 H 1.09006 * 109.46757 * 299.99747 * 3 2 1 34 34 H 0.97000 * 120.00575 * 359.97438 * 9 7 6 35 35 H 1.08991 * 109.46352 * 298.56615 * 12 10 9 36 36 H 1.09004 * 109.44293 * 178.59625 * 12 10 9 37 37 H 1.08995 * 109.49476 * 301.41134 * 13 12 10 38 38 H 1.08999 * 109.49625 * 181.31540 * 13 12 10 39 39 H 1.09010 * 109.46861 * 179.28716 * 16 14 13 40 40 H 1.09003 * 109.47265 * 299.28754 * 16 14 13 41 41 H 1.09001 * 109.47286 * 59.29135 * 16 14 13 42 42 H 0.97000 * 120.00343 * 180.02562 * 21 20 18 43 43 H 1.09003 * 109.58899 * 65.91988 * 26 17 14 44 44 H 1.08994 * 109.59109 * 186.35045 * 26 17 14 45 45 H 1.07998 * 126.51864 * 179.77302 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5126 1.1864 -0.0006 5 7 4.2621 1.1271 -1.0604 6 6 5.5600 1.0237 -0.6653 7 6 6.7386 0.9296 -1.5458 8 8 7.8517 0.8405 -1.0642 9 7 6.5825 0.9426 -2.8844 10 6 7.7539 0.8497 -3.7594 11 1 8.4995 0.1999 -3.3013 12 6 7.3355 0.2717 -5.1134 13 6 6.2640 1.1654 -5.7422 14 6 6.8426 2.5651 -5.9719 15 1 7.6415 2.5158 -6.7117 16 6 5.7393 3.5006 -6.4703 17 7 7.3789 3.0696 -4.7005 18 6 6.9824 4.2847 -4.2090 19 1 5.9933 4.6591 -4.4279 20 6 7.8518 5.0353 -3.4294 21 7 9.1351 4.7438 -3.4080 22 14 7.1992 6.4543 -2.4048 23 1 6.1967 5.9445 -1.4349 24 1 8.3212 7.0908 -1.6692 25 1 6.5607 7.4559 -3.2961 26 6 8.3536 2.2484 -3.9694 27 6 5.5648 1.0177 0.6956 28 8 4.2866 1.1243 1.0920 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8463 -0.8901 34 1 5.6947 1.0134 -3.2686 35 1 6.9341 -0.7316 -4.9716 36 1 8.2028 0.2262 -5.7721 37 1 5.4066 1.2315 -5.0725 38 1 5.9497 0.7407 -6.6956 39 1 6.1501 4.4991 -6.6211 40 1 5.3427 3.1247 -7.4135 41 1 4.9391 3.5448 -5.7315 42 1 9.7425 5.2680 -2.8630 43 1 9.2738 2.1712 -4.5485 44 1 8.5649 2.7057 -3.0029 45 1 6.4321 0.9436 1.3349 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071949972.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:57 Heat of formation + Delta-G solvation = -30.834817 kcal Electronic energy + Delta-G solvation = -28634.088126 eV Core-core repulsion = 24654.523435 eV Total energy + Delta-G solvation = -3979.564692 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.38366 -39.32808 -38.22930 -37.47686 -34.81053 -34.04891 -32.66724 -31.56529 -30.50268 -29.82034 -27.95740 -26.26902 -25.95338 -25.01055 -23.87082 -22.11901 -21.65466 -20.59963 -20.24363 -18.65546 -18.16698 -17.32173 -16.61231 -16.23539 -16.12648 -15.93786 -15.79099 -15.34214 -14.86013 -14.21922 -14.08170 -13.82353 -13.71050 -13.37680 -13.17644 -13.01952 -12.79204 -12.68900 -12.42693 -11.91246 -11.87897 -11.23006 -11.16369 -11.10941 -10.91837 -10.83442 -10.77274 -10.66682 -10.34454 -10.28804 -10.18369 -9.91671 -9.69213 -9.44539 -9.39170 -9.05106 -8.39892 -8.30427 -6.53854 -5.70143 -3.13851 1.16951 1.98823 2.47336 3.39181 3.40691 3.47241 3.47385 3.61789 3.86474 4.06728 4.54421 4.64410 4.83675 4.96163 4.99605 5.03997 5.15651 5.32046 5.36890 5.41358 5.49739 5.53685 5.57392 5.66040 5.69060 6.05041 6.07190 6.17897 6.21191 6.38875 6.40723 6.50003 6.57190 6.61178 6.67652 6.73441 6.94700 7.10257 7.18549 7.40070 7.49717 7.73288 7.88793 8.16567 8.54588 8.75960 9.28791 9.93213 10.49886 11.37964 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.010814 B = 0.004441 C = 0.004108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2588.672000 B = 6302.934900 C = 6814.010665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.385 6.385 3 C 0.163 3.837 4 C 0.183 3.817 5 N -0.431 5.431 6 C -0.057 4.057 7 C 0.598 3.402 8 O -0.544 6.544 9 N -0.678 5.678 10 C 0.116 3.884 11 H 0.077 0.923 12 C -0.118 4.118 13 C -0.132 4.132 14 C 0.166 3.834 15 H 0.025 0.975 16 C -0.136 4.136 17 N -0.582 5.582 18 C -0.247 4.247 19 H 0.066 0.934 20 C 0.006 3.994 21 N -0.900 5.900 22 Si 0.895 3.105 23 H -0.287 1.287 24 H -0.291 1.291 25 H -0.283 1.283 26 C 0.163 3.837 27 C 0.013 3.987 28 O -0.194 6.194 29 H 0.091 0.909 30 H 0.046 0.954 31 H 0.048 0.952 32 H 0.082 0.918 33 H 0.098 0.902 34 H 0.404 0.596 35 H 0.051 0.949 36 H 0.071 0.929 37 H 0.056 0.944 38 H 0.053 0.947 39 H 0.060 0.940 40 H 0.036 0.964 41 H 0.051 0.949 42 H 0.253 0.747 43 H 0.027 0.973 44 H 0.095 0.905 45 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.427 -9.606 4.604 17.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.303 6.303 3 C 0.086 3.914 4 C -0.026 4.026 5 N -0.163 5.163 6 C -0.178 4.178 7 C 0.382 3.618 8 O -0.423 6.423 9 N -0.327 5.327 10 C 0.010 3.990 11 H 0.095 0.905 12 C -0.156 4.156 13 C -0.171 4.171 14 C 0.059 3.941 15 H 0.042 0.958 16 C -0.193 4.193 17 N -0.306 5.306 18 C -0.377 4.377 19 H 0.084 0.916 20 C -0.193 4.193 21 N -0.544 5.544 22 Si 0.726 3.274 23 H -0.214 1.214 24 H -0.217 1.217 25 H -0.210 1.210 26 C 0.037 3.963 27 C -0.061 4.061 28 O -0.079 6.079 29 H 0.110 0.890 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.100 0.900 33 H 0.116 0.884 34 H 0.240 0.760 35 H 0.070 0.930 36 H 0.090 0.910 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.055 0.945 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.045 0.955 44 H 0.113 0.887 45 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -13.638 -9.712 4.395 17.310 hybrid contribution -0.523 1.090 1.114 1.644 sum -14.162 -8.622 5.509 17.471 Atomic orbital electron populations 1.22818 0.79540 1.03445 1.00544 1.87956 1.20628 1.26162 1.95603 1.20494 0.80983 0.86244 1.03677 1.25525 0.95235 1.03050 0.78754 1.70739 1.01174 1.14677 1.29706 1.22041 0.92180 1.10349 0.93216 1.16601 0.85676 0.77164 0.82318 1.90796 1.24157 1.51823 1.75475 1.45651 1.11209 1.71243 1.04601 1.21942 0.87238 1.01112 0.88708 0.90496 1.21684 0.99782 0.97838 0.96297 1.22074 0.97979 0.97758 0.99287 1.20458 0.93861 0.90841 0.88906 0.95769 1.21796 0.98584 1.00380 0.98541 1.44040 1.49952 1.18104 1.18465 1.19024 0.96204 0.94500 1.27956 0.91610 1.25043 0.94791 0.97647 1.01779 1.69971 1.01381 1.41411 1.41647 0.86481 0.77781 0.82519 0.80639 1.21357 1.21676 1.20970 1.21261 0.89767 0.86246 0.99063 1.25332 0.84621 1.00203 0.95935 1.84341 1.17189 1.68719 1.37650 0.89033 0.93565 0.93292 0.89994 0.88367 0.75954 0.92979 0.91011 0.92488 0.92844 0.92073 0.94457 0.92951 0.93671 0.95464 0.88675 0.75120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.39 -4.14 10.69 -35.23 -0.38 -4.52 16 3 C 0.16 1.64 6.56 36.01 0.24 1.88 16 4 C 0.18 2.63 7.93 -13.08 -0.10 2.52 16 5 N -0.43 -7.34 11.06 -7.65 -0.08 -7.42 16 6 C -0.06 -1.02 6.99 -83.02 -0.58 -1.60 16 7 C 0.60 12.29 7.79 -12.53 -0.10 12.19 16 8 O -0.54 -12.40 16.55 5.27 0.09 -12.31 16 9 N -0.68 -13.35 4.92 -54.54 -0.27 -13.62 16 10 C 0.12 2.29 2.82 -67.58 -0.19 2.10 16 11 H 0.08 1.53 7.58 -51.93 -0.39 1.14 16 12 C -0.12 -1.95 5.58 -26.69 -0.15 -2.10 16 13 C -0.13 -2.21 5.21 -26.61 -0.14 -2.35 16 14 C 0.17 3.36 3.49 -67.60 -0.24 3.12 16 15 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 16 C -0.14 -2.53 7.95 37.16 0.30 -2.24 16 17 N -0.58 -14.18 2.90 -164.51 -0.48 -14.65 16 18 C -0.25 -6.66 8.57 -15.06 -0.13 -6.79 16 19 H 0.07 1.75 6.25 -52.49 -0.33 1.42 16 20 C 0.01 0.18 4.94 -17.43 -0.09 0.09 16 21 N -0.90 -26.67 11.22 55.49 0.62 -26.05 16 22 Si 0.90 22.39 29.58 -169.99 -5.03 17.36 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 24 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 25 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 26 C 0.16 3.97 4.93 -3.48 -0.02 3.95 16 27 C 0.01 0.19 11.95 29.96 0.36 0.55 16 28 O -0.19 -2.74 10.73 6.52 0.07 -2.67 16 29 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.40 7.66 6.50 -40.82 -0.27 7.40 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.06 0.98 6.40 -51.93 -0.33 0.65 16 38 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.06 1.24 7.63 -51.92 -0.40 0.85 16 40 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.05 0.99 7.44 -51.93 -0.39 0.61 16 42 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 43 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.10 2.71 6.13 -51.93 -0.32 2.39 16 45 H 0.23 2.72 8.06 -52.49 -0.42 2.29 16 LS Contribution 368.52 15.07 5.55 5.55 Total: -1.00 -33.67 368.52 -6.26 -39.92 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -6.63 Total: 5.75 kcal Atomic # 6 Polarization: 12.38 SS G_CDS: 0.27 Total: 12.65 kcal Atomic # 7 Polarization: -61.54 SS G_CDS: -0.21 Total: -61.75 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: -0.22 Total: -19.49 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.03 Total: 17.36 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.67 -6.26 -39.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071949972.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.089 kcal (2) G-P(sol) polarization free energy of solvation -33.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds