Wall clock time and date at job start Tue Mar 31 2020 14:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 114.00031 * 2 1 4 4 C 1.50704 * 109.47031 * 180.02562 * 3 2 1 5 5 N 1.29937 * 125.37859 * 89.99573 * 4 3 2 6 6 C 1.36069 * 108.47690 * 180.02562 * 5 4 3 7 7 C 1.47419 * 126.44819 * 179.97438 * 6 5 4 8 8 O 1.21608 * 119.99656 * 180.02562 * 7 6 5 9 9 N 1.34771 * 119.99978 * 0.03028 * 7 6 5 10 10 C 1.46503 * 120.00038 * 179.97438 * 9 7 6 11 11 H 1.08998 * 109.49647 * 34.93464 * 10 9 7 12 12 C 1.53044 * 109.49748 * 154.99407 * 10 9 7 13 13 C 1.53044 * 109.53536 * 58.58986 * 12 10 9 14 14 C 1.53191 * 109.31282 * 61.36383 * 13 12 10 15 15 H 1.08999 * 109.70834 * 65.22509 * 14 13 12 16 16 C 1.53000 * 109.58261 * 185.57801 * 14 13 12 17 17 N 1.46925 * 108.77514 * 305.35896 * 14 13 12 18 18 C 1.36935 * 120.63365 * 233.58727 * 17 14 13 19 19 H 1.07999 * 120.00221 * 29.97591 * 18 17 14 20 20 C 1.38817 * 119.99970 * 209.97357 * 18 17 14 21 21 N 1.31617 * 120.00045 * 15.41423 * 20 18 17 22 22 Si 1.86798 * 120.00091 * 195.68267 * 20 18 17 23 23 H 1.48506 * 109.46898 * 60.00345 * 22 20 18 24 24 H 1.48500 * 109.47236 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47242 * 300.00598 * 22 20 18 26 26 C 1.46931 * 118.73705 * 53.86846 * 17 14 13 27 27 C 1.36094 * 107.09951 * 0.22709 * 6 5 4 28 28 O 1.34049 * 125.37768 * 270.03516 * 4 3 2 29 29 H 1.09000 * 109.47202 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47004 * 300.00332 * 1 2 3 31 31 H 1.08994 * 109.46870 * 59.99977 * 1 2 3 32 32 H 1.08997 * 109.47231 * 60.00001 * 3 2 1 33 33 H 1.09006 * 109.46757 * 299.99747 * 3 2 1 34 34 H 0.97000 * 120.00575 * 359.97438 * 9 7 6 35 35 H 1.08991 * 109.46352 * 298.56615 * 12 10 9 36 36 H 1.09004 * 109.44293 * 178.59625 * 12 10 9 37 37 H 1.08995 * 109.49476 * 301.41134 * 13 12 10 38 38 H 1.08999 * 109.49625 * 181.31540 * 13 12 10 39 39 H 1.09010 * 109.46861 * 179.28716 * 16 14 13 40 40 H 1.09003 * 109.47265 * 299.28754 * 16 14 13 41 41 H 1.09001 * 109.47286 * 59.29135 * 16 14 13 42 42 H 0.97000 * 120.00343 * 180.02562 * 21 20 18 43 43 H 1.09003 * 109.58899 * 65.91988 * 26 17 14 44 44 H 1.08994 * 109.59109 * 186.35045 * 26 17 14 45 45 H 1.07998 * 126.51864 * 179.77302 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5126 1.1864 -0.0006 5 7 4.2621 1.1271 -1.0604 6 6 5.5600 1.0237 -0.6653 7 6 6.7386 0.9296 -1.5458 8 8 7.8517 0.8405 -1.0642 9 7 6.5825 0.9426 -2.8844 10 6 7.7539 0.8497 -3.7594 11 1 8.4995 0.1999 -3.3013 12 6 7.3355 0.2717 -5.1134 13 6 6.2640 1.1654 -5.7422 14 6 6.8426 2.5651 -5.9719 15 1 7.6415 2.5158 -6.7117 16 6 5.7393 3.5006 -6.4703 17 7 7.3789 3.0696 -4.7005 18 6 6.9824 4.2847 -4.2090 19 1 5.9933 4.6591 -4.4279 20 6 7.8518 5.0353 -3.4294 21 7 9.1351 4.7438 -3.4080 22 14 7.1992 6.4543 -2.4048 23 1 6.1967 5.9445 -1.4349 24 1 8.3212 7.0908 -1.6692 25 1 6.5607 7.4559 -3.2961 26 6 8.3536 2.2484 -3.9694 27 6 5.5648 1.0177 0.6956 28 8 4.2866 1.1243 1.0920 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8463 -0.8901 34 1 5.6947 1.0134 -3.2686 35 1 6.9341 -0.7316 -4.9716 36 1 8.2028 0.2262 -5.7721 37 1 5.4066 1.2315 -5.0725 38 1 5.9497 0.7407 -6.6956 39 1 6.1501 4.4991 -6.6211 40 1 5.3427 3.1247 -7.4135 41 1 4.9391 3.5448 -5.7315 42 1 9.7425 5.2680 -2.8630 43 1 9.2738 2.1712 -4.5485 44 1 8.5649 2.7057 -3.0029 45 1 6.4321 0.9436 1.3349 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071949972.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:56 Heat of formation + Delta-G solvation = -57.510737 kcal Electronic energy + Delta-G solvation = -28635.244881 eV Core-core repulsion = 24654.523435 eV Total energy + Delta-G solvation = -3980.721446 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.55703 -40.93854 -39.15755 -38.90422 -36.06600 -35.76085 -34.50050 -32.70904 -31.99969 -31.70462 -28.81285 -27.90489 -26.89230 -26.62167 -25.26059 -23.88301 -22.82038 -22.08704 -21.75262 -20.36378 -19.48330 -18.28414 -18.22630 -17.71026 -17.17621 -17.01855 -16.79536 -16.64305 -16.43139 -15.95554 -15.71763 -15.50387 -15.16383 -14.84469 -14.61616 -14.45222 -14.03530 -13.87767 -13.67008 -13.30294 -12.99136 -12.88310 -12.62408 -12.62332 -12.57428 -12.42677 -12.29756 -12.13631 -12.10421 -12.00746 -11.58901 -11.33155 -11.17219 -11.06021 -10.79731 -10.51936 -10.31183 -9.94455 -8.55895 -7.81781 -5.26815 -0.02177 0.76171 1.38639 1.39873 1.41730 1.47068 2.10095 2.27300 2.49761 2.60000 3.20616 3.33404 3.63770 3.68700 3.69834 4.01699 4.09085 4.10154 4.17839 4.21831 4.40122 4.47304 4.54841 4.56601 4.62739 4.63665 4.72532 4.80729 4.88832 4.91859 4.95726 5.03555 5.08072 5.10118 5.25286 5.31659 5.55634 5.60322 5.64916 5.72807 5.73404 6.01136 6.26456 6.45103 6.62817 7.19006 7.19755 7.93299 8.44444 9.23374 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.010814 B = 0.004441 C = 0.004108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2588.672000 B = 6302.934900 C = 6814.010665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.413 6.413 3 C 0.163 3.837 4 C 0.190 3.810 5 N -0.458 5.458 6 C -0.096 4.096 7 C 0.592 3.408 8 O -0.578 6.578 9 N -0.674 5.674 10 C 0.124 3.876 11 H 0.072 0.928 12 C -0.110 4.110 13 C -0.120 4.120 14 C 0.155 3.845 15 H 0.018 0.982 16 C -0.128 4.128 17 N -0.595 5.595 18 C -0.237 4.237 19 H 0.071 0.929 20 C -0.052 4.052 21 N -0.935 5.935 22 Si 0.949 3.051 23 H -0.288 1.288 24 H -0.299 1.299 25 H -0.270 1.270 26 C 0.173 3.827 27 C 0.032 3.968 28 O -0.187 6.187 29 H 0.099 0.901 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.114 0.886 33 H 0.111 0.889 34 H 0.409 0.591 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.055 0.945 38 H 0.091 0.909 39 H 0.036 0.964 40 H 0.076 0.924 41 H 0.047 0.953 42 H 0.244 0.756 43 H 0.004 0.996 44 H 0.047 0.953 45 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.587 -10.598 4.317 20.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.332 6.332 3 C 0.086 3.914 4 C -0.020 4.020 5 N -0.189 5.189 6 C -0.216 4.216 7 C 0.378 3.622 8 O -0.459 6.459 9 N -0.323 5.323 10 C 0.018 3.982 11 H 0.090 0.910 12 C -0.148 4.148 13 C -0.159 4.159 14 C 0.050 3.950 15 H 0.036 0.964 16 C -0.185 4.185 17 N -0.319 5.319 18 C -0.368 4.368 19 H 0.088 0.912 20 C -0.247 4.247 21 N -0.582 5.582 22 Si 0.779 3.221 23 H -0.215 1.215 24 H -0.225 1.225 25 H -0.196 1.196 26 C 0.046 3.954 27 C -0.042 4.042 28 O -0.072 6.072 29 H 0.118 0.882 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.131 0.869 33 H 0.129 0.871 34 H 0.246 0.754 35 H 0.101 0.899 36 H 0.098 0.902 37 H 0.074 0.926 38 H 0.110 0.890 39 H 0.055 0.945 40 H 0.095 0.905 41 H 0.066 0.934 42 H 0.053 0.947 43 H 0.022 0.978 44 H 0.066 0.934 45 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -16.855 -10.718 4.064 20.383 hybrid contribution 0.372 1.359 1.184 1.841 sum -16.482 -9.359 5.248 19.667 Atomic orbital electron populations 1.23050 0.77335 1.04518 1.01971 1.87903 1.22975 1.26438 1.95906 1.20804 0.78196 0.86601 1.05830 1.26485 0.96777 1.00667 0.78035 1.70682 1.00907 1.16275 1.31065 1.21818 0.92047 1.13682 0.94019 1.17015 0.86161 0.76269 0.82768 1.90761 1.25700 1.53393 1.76050 1.45611 1.11167 1.70969 1.04524 1.21723 0.87426 0.98109 0.90969 0.91005 1.21670 1.00277 0.98996 0.93862 1.21959 0.97485 0.95275 1.01202 1.20759 0.94173 0.93332 0.86760 0.96422 1.21718 0.97652 0.98850 1.00278 1.44256 1.49796 1.17574 1.20287 1.19323 0.96006 0.94878 1.26607 0.91154 1.25712 0.95029 1.00307 1.03651 1.70141 1.02435 1.42698 1.42904 0.85602 0.76798 0.80402 0.79306 1.21493 1.22548 1.19550 1.20937 0.89631 0.88569 0.96242 1.25799 0.85553 0.97615 0.95246 1.84389 1.16816 1.68436 1.37589 0.88234 0.91721 0.92254 0.86854 0.87128 0.75413 0.89915 0.90193 0.92628 0.89032 0.94521 0.90541 0.93403 0.94731 0.97822 0.93430 0.72625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 113.37 1.25 1.51 16 2 O -0.41 -7.88 10.69 -148.98 -1.59 -9.48 16 3 C 0.16 2.84 6.56 71.24 0.47 3.30 16 4 C 0.19 5.12 7.93 88.39 0.70 5.83 16 5 N -0.46 -15.21 11.06 -293.03 -3.24 -18.45 16 6 C -0.10 -3.45 6.99 40.41 0.28 -3.17 16 7 C 0.59 24.82 7.79 86.66 0.67 25.50 16 8 O -0.58 -27.33 16.55 -4.06 -0.07 -27.39 16 9 N -0.67 -26.64 4.92 -444.74 -2.19 -28.83 16 10 C 0.12 4.94 2.82 45.22 0.13 5.06 16 11 H 0.07 2.94 7.58 -2.39 -0.02 2.92 16 12 C -0.11 -3.39 5.58 30.62 0.17 -3.22 16 13 C -0.12 -3.67 5.21 30.67 0.16 -3.51 16 14 C 0.16 6.07 3.49 44.97 0.16 6.22 16 15 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 16 C -0.13 -4.51 7.95 71.98 0.57 -3.94 16 17 N -0.60 -29.36 2.90 -674.39 -1.95 -31.31 16 18 C -0.24 -12.99 8.57 84.04 0.72 -12.27 16 19 H 0.07 3.73 6.25 -2.91 -0.02 3.71 16 20 C -0.05 -3.01 4.94 84.86 0.42 -2.59 16 21 N -0.93 -58.02 11.22 21.65 0.24 -57.77 16 22 Si 0.95 47.10 29.58 68.60 2.03 49.13 16 23 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 24 H -0.30 -15.10 7.11 99.48 0.71 -14.39 16 25 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 26 C 0.17 8.74 4.93 86.51 0.43 9.17 16 27 C 0.03 0.93 11.95 67.32 0.80 1.73 16 28 O -0.19 -4.96 10.73 0.43 0.00 -4.96 16 29 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.11 1.64 8.14 -2.38 -0.02 1.62 16 34 H 0.41 15.24 6.50 -92.71 -0.60 14.64 16 35 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 37 H 0.06 1.74 6.40 -2.39 -0.02 1.73 16 38 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 39 H 0.04 1.45 7.63 -2.38 -0.02 1.43 16 40 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.05 1.72 7.44 -2.39 -0.02 1.70 16 42 H 0.24 14.95 8.31 -92.71 -0.77 14.18 16 43 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 44 H 0.05 2.86 6.13 -2.39 -0.01 2.85 16 45 H 0.26 5.75 8.06 -2.91 -0.02 5.72 16 Total: -1.00 -76.87 368.52 0.58 -76.29 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: 0.41 Total: 23.13 kcal Atomic # 6 Polarization: 22.70 SS G_CDS: 6.93 Total: 29.63 kcal Atomic # 7 Polarization: -129.22 SS G_CDS: -7.14 Total: -136.36 kcal Atomic # 8 Polarization: -40.17 SS G_CDS: -1.65 Total: -41.82 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.13 kcal Total: -76.87 0.58 -76.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071949972.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.781 kcal (2) G-P(sol) polarization free energy of solvation -76.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds