Wall clock time and date at job start Tue Mar 31 2020 14:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 114.00221 * 2 1 4 4 C 1.50695 * 109.47467 * 180.02562 * 3 2 1 5 5 N 1.29938 * 125.38194 * 90.29466 * 4 3 2 6 6 C 1.36058 * 108.48027 * 180.16600 * 5 4 3 7 7 C 1.47427 * 126.45047 * 179.82685 * 6 5 4 8 8 O 1.21610 * 120.00129 * 179.69246 * 7 6 5 9 9 N 1.34773 * 119.99876 * 359.68859 * 7 6 5 10 10 C 1.46501 * 120.00276 * 180.02562 * 9 7 6 11 11 H 1.09003 * 109.49060 * 35.06237 * 10 9 7 12 12 C 1.53036 * 109.52694 * 155.14579 * 10 9 7 13 13 C 1.53037 * 109.53885 * 181.33195 * 12 10 9 14 14 C 1.53185 * 109.31322 * 298.63362 * 13 12 10 15 15 H 1.08997 * 109.70528 * 294.78072 * 14 13 12 16 16 C 1.53006 * 109.58578 * 174.42079 * 14 13 12 17 17 N 1.46928 * 108.77649 * 54.63382 * 14 13 12 18 18 C 1.36936 * 120.63051 * 126.40682 * 17 14 13 19 19 H 1.07995 * 120.00547 * 329.21150 * 18 17 14 20 20 C 1.38822 * 119.99709 * 149.20539 * 18 17 14 21 21 N 1.31620 * 119.99894 * 346.00001 * 20 18 17 22 22 Si 1.86801 * 119.99668 * 165.99941 * 20 18 17 23 23 H 1.48494 * 109.47391 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46889 * 120.00367 * 22 20 18 25 25 H 1.48491 * 109.47167 * 239.99841 * 22 20 18 26 26 C 1.46923 * 118.74014 * 306.39646 * 17 14 13 27 27 C 1.36091 * 107.10473 * 359.56289 * 6 5 4 28 28 O 1.34053 * 125.37986 * 269.97682 * 4 3 2 29 29 H 1.09002 * 109.46703 * 300.00337 * 1 2 3 30 30 H 1.08996 * 109.47087 * 59.99935 * 1 2 3 31 31 H 1.09000 * 109.46837 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47210 * 59.99754 * 3 2 1 33 33 H 1.09008 * 109.46998 * 300.00153 * 3 2 1 34 34 H 0.97008 * 119.99644 * 359.97438 * 9 7 6 35 35 H 1.09005 * 109.46209 * 301.35382 * 12 10 9 36 36 H 1.08999 * 109.45890 * 61.31107 * 12 10 9 37 37 H 1.09004 * 109.49859 * 178.67879 * 13 12 10 38 38 H 1.09005 * 109.49734 * 58.58947 * 13 12 10 39 39 H 1.09000 * 109.46870 * 300.71092 * 16 14 13 40 40 H 1.08992 * 109.47013 * 60.71399 * 16 14 13 41 41 H 1.08997 * 109.46833 * 180.71199 * 16 14 13 42 42 H 0.96997 * 119.99522 * 179.97438 * 21 20 18 43 43 H 1.08998 * 109.59213 * 173.39425 * 26 17 14 44 44 H 1.09005 * 109.58512 * 293.81945 * 26 17 14 45 45 H 1.07996 * 126.53124 * 180.23939 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1865 -0.0006 5 7 4.2626 1.1327 -1.0603 6 6 5.5600 1.0241 -0.6654 7 6 6.7388 0.9305 -1.5459 8 8 7.8520 0.8425 -1.0643 9 7 6.5826 0.9425 -2.8845 10 6 7.7538 0.8490 -3.7595 11 1 8.4985 0.1977 -3.3020 12 6 7.3354 0.2737 -5.1145 13 6 8.5643 0.1448 -6.0174 14 6 9.1713 1.5322 -6.2479 15 1 8.4707 2.1515 -6.8079 16 6 10.4773 1.3966 -7.0334 17 7 9.4430 2.1522 -4.9438 18 6 10.6895 2.6351 -4.6470 19 1 11.5648 2.1722 -5.0781 20 6 10.8281 3.7200 -3.7920 21 7 9.7797 4.4544 -3.4855 22 14 12.5024 4.1372 -3.0764 23 1 13.5093 3.1655 -3.5734 24 1 12.8909 5.5086 -3.4931 25 1 12.4381 4.0699 -1.5944 26 6 8.3517 2.2444 -3.9644 27 6 5.5655 1.0241 0.6955 28 8 4.2868 1.1255 1.0920 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.6887 1.8464 0.8899 33 1 1.6886 1.8464 -0.8900 34 1 5.6945 1.0124 -3.2685 35 1 6.8870 -0.7092 -4.9689 36 1 6.6090 0.9382 -5.5824 37 1 8.2694 -0.2868 -6.9739 38 1 9.3014 -0.4999 -5.5387 39 1 11.1746 0.7730 -6.4739 40 1 10.2737 0.9366 -8.0003 41 1 10.9140 2.3837 -7.1853 42 1 9.8765 5.2122 -2.8877 43 1 8.7412 2.6177 -3.0173 44 1 7.5822 2.9205 -4.3372 45 1 6.4331 0.9553 1.3349 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071949973.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:00 Heat of formation + Delta-G solvation = -33.304346 kcal Electronic energy + Delta-G solvation = -27684.241630 eV Core-core repulsion = 23704.569852 eV Total energy + Delta-G solvation = -3979.671778 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.53669 -39.33307 -38.33048 -37.53684 -34.96667 -34.34490 -32.75707 -31.69089 -30.55104 -29.79465 -28.07850 -26.24883 -26.00856 -25.07514 -23.73617 -22.20923 -21.74220 -20.65636 -20.04311 -19.28396 -18.07753 -17.44682 -16.62119 -16.40438 -16.23729 -16.03228 -15.92591 -15.51378 -14.97485 -14.23214 -14.11007 -13.77231 -13.73676 -13.43630 -13.31232 -13.22548 -12.82344 -12.70480 -12.33919 -12.00164 -11.82141 -11.48342 -11.31682 -11.07318 -10.96145 -10.84659 -10.69567 -10.48266 -10.35972 -10.28515 -10.20706 -9.94778 -9.86108 -9.48911 -9.40650 -9.19396 -8.48588 -8.37869 -6.54494 -5.69785 -3.16027 1.02669 1.82500 2.33444 3.24137 3.43322 3.48981 3.52012 3.53409 3.65412 3.92606 4.52708 4.56477 4.69941 4.84337 4.89356 4.91761 5.00203 5.24634 5.38892 5.40257 5.42194 5.53048 5.55942 5.62182 5.73596 5.91662 6.02042 6.17370 6.32325 6.35404 6.44197 6.49893 6.51181 6.54993 6.68094 6.79594 6.96428 7.09416 7.17632 7.29904 7.39713 7.78729 7.90046 7.98071 8.54528 8.59837 9.29076 9.92921 10.49359 11.38213 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.016005 B = 0.003113 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.982021 B = 8991.396865 C =10182.726802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.385 6.385 3 C 0.163 3.837 4 C 0.185 3.815 5 N -0.435 5.435 6 C -0.062 4.062 7 C 0.596 3.404 8 O -0.528 6.528 9 N -0.700 5.700 10 C 0.116 3.884 11 H 0.083 0.917 12 C -0.116 4.116 13 C -0.125 4.125 14 C 0.164 3.836 15 H 0.025 0.975 16 C -0.136 4.136 17 N -0.583 5.583 18 C -0.251 4.251 19 H 0.070 0.930 20 C 0.006 3.994 21 N -0.900 5.900 22 Si 0.900 3.100 23 H -0.277 1.277 24 H -0.291 1.291 25 H -0.289 1.289 26 C 0.170 3.830 27 C 0.018 3.982 28 O -0.192 6.192 29 H 0.046 0.954 30 H 0.049 0.951 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.098 0.902 34 H 0.401 0.599 35 H 0.051 0.949 36 H 0.060 0.940 37 H 0.055 0.945 38 H 0.061 0.939 39 H 0.053 0.947 40 H 0.037 0.963 41 H 0.061 0.939 42 H 0.252 0.748 43 H 0.093 0.907 44 H 0.018 0.982 45 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.047 -7.924 5.280 20.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.303 6.303 3 C 0.085 3.915 4 C -0.024 4.024 5 N -0.168 5.168 6 C -0.183 4.183 7 C 0.380 3.620 8 O -0.405 6.405 9 N -0.349 5.349 10 C 0.011 3.989 11 H 0.101 0.899 12 C -0.154 4.154 13 C -0.165 4.165 14 C 0.058 3.942 15 H 0.043 0.957 16 C -0.193 4.193 17 N -0.307 5.307 18 C -0.381 4.381 19 H 0.088 0.912 20 C -0.193 4.193 21 N -0.544 5.544 22 Si 0.730 3.270 23 H -0.202 1.202 24 H -0.218 1.218 25 H -0.215 1.215 26 C 0.043 3.957 27 C -0.056 4.056 28 O -0.077 6.077 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.110 0.890 32 H 0.101 0.899 33 H 0.116 0.884 34 H 0.235 0.765 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.056 0.944 41 H 0.080 0.920 42 H 0.062 0.938 43 H 0.111 0.889 44 H 0.036 0.964 45 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -17.359 -7.977 5.099 19.773 hybrid contribution 0.405 0.570 0.999 1.219 sum -16.954 -7.407 6.098 19.480 Atomic orbital electron populations 1.22828 0.79426 1.03548 1.00550 1.87965 1.20715 1.26049 1.95600 1.20500 0.80902 0.86372 1.03679 1.25549 0.95275 1.02832 0.78732 1.70722 1.01144 1.15082 1.29806 1.22053 0.92109 1.10878 0.93287 1.16666 0.85782 0.77319 0.82238 1.90869 1.24040 1.50332 1.75220 1.45883 1.11158 1.72713 1.05154 1.22072 0.86169 1.02288 0.88410 0.89855 1.21675 0.98511 0.99719 0.95542 1.22041 0.96727 0.99834 0.97909 1.20502 0.94717 0.91068 0.87938 0.95716 1.21797 0.98078 1.01958 0.97512 1.44019 1.08715 1.68787 1.09153 1.19168 0.84136 1.08362 1.26409 0.91243 1.25135 0.96934 0.95606 1.01639 1.70009 1.28646 1.17951 1.37810 0.86253 0.83989 0.77691 0.79023 1.20214 1.21837 1.21541 1.21064 0.89491 0.89210 0.95980 1.25396 0.84633 0.99595 0.95927 1.84363 1.17152 1.68621 1.37609 0.93510 0.93286 0.88963 0.89928 0.88391 0.76466 0.92995 0.92174 0.92644 0.92052 0.92824 0.94372 0.91988 0.93824 0.88901 0.96394 0.74961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.39 -3.63 10.69 -35.23 -0.38 -4.01 16 3 C 0.16 1.35 6.56 36.00 0.24 1.58 16 4 C 0.19 2.29 7.93 -13.08 -0.10 2.19 16 5 N -0.44 -6.45 11.06 -7.65 -0.08 -6.54 16 6 C -0.06 -1.00 6.99 -83.02 -0.58 -1.58 16 7 C 0.60 11.45 7.78 -12.52 -0.10 11.36 16 8 O -0.53 -11.92 16.55 5.27 0.09 -11.84 16 9 N -0.70 -12.78 5.08 -54.76 -0.28 -13.06 16 10 C 0.12 2.35 2.60 -67.81 -0.18 2.17 16 11 H 0.08 1.88 7.58 -51.93 -0.39 1.49 16 12 C -0.12 -1.98 5.35 -26.69 -0.14 -2.12 16 13 C -0.13 -2.19 5.37 -26.62 -0.14 -2.33 16 14 C 0.16 3.43 3.50 -67.60 -0.24 3.20 16 15 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 16 C -0.14 -2.59 7.96 37.16 0.30 -2.30 16 17 N -0.58 -14.77 2.98 -164.78 -0.49 -15.26 16 18 C -0.25 -6.95 8.54 -15.06 -0.13 -7.08 16 19 H 0.07 1.87 6.27 -52.49 -0.33 1.55 16 20 C 0.01 0.17 4.97 -17.43 -0.09 0.08 16 21 N -0.90 -26.99 11.21 55.49 0.62 -26.37 16 22 Si 0.90 22.55 29.58 -169.99 -5.03 17.52 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 24 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 25 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 26 C 0.17 4.21 4.84 -3.71 -0.02 4.20 16 27 C 0.02 0.24 11.95 29.96 0.36 0.60 16 28 O -0.19 -2.39 10.73 6.50 0.07 -2.32 16 29 H 0.05 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.05 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.10 0.66 8.14 -51.92 -0.42 0.23 16 34 H 0.40 6.45 8.33 -40.82 -0.34 6.11 16 35 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.05 1.04 7.44 -51.93 -0.39 0.65 16 40 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.06 1.27 7.63 -51.93 -0.40 0.88 16 42 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 43 H 0.09 2.70 6.17 -51.93 -0.32 2.38 16 44 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.23 2.43 8.06 -52.49 -0.42 2.01 16 LS Contribution 372.04 15.07 5.61 5.61 Total: -1.00 -34.61 372.04 -6.38 -40.99 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -6.80 Total: 4.02 kcal Atomic # 6 Polarization: 10.96 SS G_CDS: 0.29 Total: 11.25 kcal Atomic # 7 Polarization: -60.99 SS G_CDS: -0.23 Total: -61.22 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: -0.22 Total: -18.17 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.03 Total: 17.52 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.61 -6.38 -40.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071949973.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.686 kcal (2) G-P(sol) polarization free energy of solvation -34.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds