Wall clock time and date at job start Tue Mar 31 2020 14:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 114.00221 * 2 1 4 4 C 1.50695 * 109.47467 * 180.02562 * 3 2 1 5 5 N 1.29938 * 125.38194 * 90.29466 * 4 3 2 6 6 C 1.36058 * 108.48027 * 180.16600 * 5 4 3 7 7 C 1.47427 * 126.45047 * 179.82685 * 6 5 4 8 8 O 1.21610 * 120.00129 * 179.69246 * 7 6 5 9 9 N 1.34773 * 119.99876 * 359.68859 * 7 6 5 10 10 C 1.46501 * 120.00276 * 180.02562 * 9 7 6 11 11 H 1.09003 * 109.49060 * 35.06237 * 10 9 7 12 12 C 1.53036 * 109.52694 * 155.14579 * 10 9 7 13 13 C 1.53037 * 109.53885 * 181.33195 * 12 10 9 14 14 C 1.53185 * 109.31322 * 298.63362 * 13 12 10 15 15 H 1.08997 * 109.70528 * 294.78072 * 14 13 12 16 16 C 1.53006 * 109.58578 * 174.42079 * 14 13 12 17 17 N 1.46928 * 108.77649 * 54.63382 * 14 13 12 18 18 C 1.36936 * 120.63051 * 126.40682 * 17 14 13 19 19 H 1.07995 * 120.00547 * 329.21150 * 18 17 14 20 20 C 1.38822 * 119.99709 * 149.20539 * 18 17 14 21 21 N 1.31620 * 119.99894 * 346.00001 * 20 18 17 22 22 Si 1.86801 * 119.99668 * 165.99941 * 20 18 17 23 23 H 1.48494 * 109.47391 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46889 * 120.00367 * 22 20 18 25 25 H 1.48491 * 109.47167 * 239.99841 * 22 20 18 26 26 C 1.46923 * 118.74014 * 306.39646 * 17 14 13 27 27 C 1.36091 * 107.10473 * 359.56289 * 6 5 4 28 28 O 1.34053 * 125.37986 * 269.97682 * 4 3 2 29 29 H 1.09002 * 109.46703 * 300.00337 * 1 2 3 30 30 H 1.08996 * 109.47087 * 59.99935 * 1 2 3 31 31 H 1.09000 * 109.46837 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47210 * 59.99754 * 3 2 1 33 33 H 1.09008 * 109.46998 * 300.00153 * 3 2 1 34 34 H 0.97008 * 119.99644 * 359.97438 * 9 7 6 35 35 H 1.09005 * 109.46209 * 301.35382 * 12 10 9 36 36 H 1.08999 * 109.45890 * 61.31107 * 12 10 9 37 37 H 1.09004 * 109.49859 * 178.67879 * 13 12 10 38 38 H 1.09005 * 109.49734 * 58.58947 * 13 12 10 39 39 H 1.09000 * 109.46870 * 300.71092 * 16 14 13 40 40 H 1.08992 * 109.47013 * 60.71399 * 16 14 13 41 41 H 1.08997 * 109.46833 * 180.71199 * 16 14 13 42 42 H 0.96997 * 119.99522 * 179.97438 * 21 20 18 43 43 H 1.08998 * 109.59213 * 173.39425 * 26 17 14 44 44 H 1.09005 * 109.58512 * 293.81945 * 26 17 14 45 45 H 1.07996 * 126.53124 * 180.23939 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1865 -0.0006 5 7 4.2626 1.1327 -1.0603 6 6 5.5600 1.0241 -0.6654 7 6 6.7388 0.9305 -1.5459 8 8 7.8520 0.8425 -1.0643 9 7 6.5826 0.9425 -2.8845 10 6 7.7538 0.8490 -3.7595 11 1 8.4985 0.1977 -3.3020 12 6 7.3354 0.2737 -5.1145 13 6 8.5643 0.1448 -6.0174 14 6 9.1713 1.5322 -6.2479 15 1 8.4707 2.1515 -6.8079 16 6 10.4773 1.3966 -7.0334 17 7 9.4430 2.1522 -4.9438 18 6 10.6895 2.6351 -4.6470 19 1 11.5648 2.1722 -5.0781 20 6 10.8281 3.7200 -3.7920 21 7 9.7797 4.4544 -3.4855 22 14 12.5024 4.1372 -3.0764 23 1 13.5093 3.1655 -3.5734 24 1 12.8909 5.5086 -3.4931 25 1 12.4381 4.0699 -1.5944 26 6 8.3517 2.2444 -3.9644 27 6 5.5655 1.0241 0.6955 28 8 4.2868 1.1255 1.0920 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.6887 1.8464 0.8899 33 1 1.6886 1.8464 -0.8900 34 1 5.6945 1.0124 -3.2685 35 1 6.8870 -0.7092 -4.9689 36 1 6.6090 0.9382 -5.5824 37 1 8.2694 -0.2868 -6.9739 38 1 9.3014 -0.4999 -5.5387 39 1 11.1746 0.7730 -6.4739 40 1 10.2737 0.9366 -8.0003 41 1 10.9140 2.3837 -7.1853 42 1 9.8765 5.2122 -2.8877 43 1 8.7412 2.6177 -3.0173 44 1 7.5822 2.9205 -4.3372 45 1 6.4331 0.9553 1.3349 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071949973.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:59 Heat of formation + Delta-G solvation = -61.325811 kcal Electronic energy + Delta-G solvation = -27685.456732 eV Core-core repulsion = 23704.569852 eV Total energy + Delta-G solvation = -3980.886880 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.58863 -40.91238 -39.23769 -38.90581 -36.17239 -35.94121 -34.65066 -32.73078 -32.06682 -31.70520 -28.83315 -27.84434 -26.96393 -26.61307 -25.10008 -23.96389 -22.80966 -22.09130 -21.58330 -20.95839 -19.33327 -18.36316 -18.27035 -17.68445 -17.38684 -17.02620 -16.86272 -16.64437 -16.50796 -15.95807 -15.67947 -15.45899 -15.18016 -14.98372 -14.77454 -14.45131 -14.13091 -13.88882 -13.51277 -13.29581 -13.09539 -12.78942 -12.72190 -12.63946 -12.55784 -12.31459 -12.29746 -12.12203 -12.06069 -11.97611 -11.69981 -11.51203 -11.20337 -11.12153 -10.78999 -10.55908 -10.35854 -10.07927 -8.61007 -7.84820 -5.33292 -0.05422 0.71379 1.37728 1.41503 1.45080 1.53820 1.99450 2.15846 2.49806 2.56043 3.18360 3.31733 3.56521 3.66970 3.75020 3.94238 4.07608 4.10276 4.21257 4.24877 4.37528 4.38269 4.54551 4.55494 4.58553 4.63568 4.70613 4.78640 4.87595 4.88349 4.92857 5.00916 5.06074 5.17394 5.27480 5.30138 5.40417 5.55500 5.60508 5.71122 5.76717 6.02052 6.20537 6.42384 6.55025 7.09595 7.17353 7.88906 8.39950 9.20668 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.016005 B = 0.003113 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.982021 B = 8991.396865 C =10182.726802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.415 6.415 3 C 0.161 3.839 4 C 0.194 3.806 5 N -0.457 5.457 6 C -0.097 4.097 7 C 0.593 3.407 8 O -0.572 6.572 9 N -0.693 5.693 10 C 0.130 3.870 11 H 0.058 0.942 12 C -0.108 4.108 13 C -0.116 4.116 14 C 0.152 3.848 15 H 0.021 0.979 16 C -0.128 4.128 17 N -0.602 5.602 18 C -0.249 4.249 19 H 0.076 0.924 20 C -0.055 4.055 21 N -0.935 5.935 22 Si 0.959 3.041 23 H -0.262 1.262 24 H -0.289 1.289 25 H -0.299 1.299 26 C 0.183 3.817 27 C 0.038 3.962 28 O -0.186 6.186 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.097 0.903 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.413 0.587 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.097 0.903 38 H 0.055 0.945 39 H 0.047 0.953 40 H 0.079 0.921 41 H 0.038 0.962 42 H 0.244 0.756 43 H 0.043 0.957 44 H -0.005 1.005 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.765 -9.477 4.736 22.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.334 6.334 3 C 0.085 3.915 4 C -0.016 4.016 5 N -0.189 5.189 6 C -0.216 4.216 7 C 0.379 3.621 8 O -0.452 6.452 9 N -0.342 5.342 10 C 0.024 3.976 11 H 0.077 0.923 12 C -0.146 4.146 13 C -0.155 4.155 14 C 0.047 3.953 15 H 0.038 0.962 16 C -0.186 4.186 17 N -0.326 5.326 18 C -0.379 4.379 19 H 0.093 0.907 20 C -0.250 4.250 21 N -0.582 5.582 22 Si 0.788 3.212 23 H -0.186 1.186 24 H -0.216 1.216 25 H -0.226 1.226 26 C 0.056 3.944 27 C -0.036 4.036 28 O -0.071 6.071 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.116 0.884 32 H 0.132 0.868 33 H 0.132 0.868 34 H 0.250 0.750 35 H 0.102 0.898 36 H 0.089 0.911 37 H 0.115 0.885 38 H 0.074 0.926 39 H 0.066 0.934 40 H 0.097 0.903 41 H 0.057 0.943 42 H 0.053 0.947 43 H 0.061 0.939 44 H 0.013 0.987 45 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -19.111 -9.560 4.501 21.838 hybrid contribution 0.819 1.034 1.164 1.759 sum -18.292 -8.526 5.665 20.962 Atomic orbital electron populations 1.23043 0.77327 1.04463 1.02003 1.87908 1.22970 1.26594 1.95920 1.20841 0.78109 0.86569 1.06019 1.26498 0.96772 1.00389 0.77969 1.70670 1.00674 1.16547 1.31035 1.21679 0.91845 1.14246 0.93851 1.17096 0.86260 0.76081 0.82631 1.90832 1.26032 1.52358 1.75955 1.45759 1.11120 1.72365 1.04982 1.21656 0.86460 0.98790 0.90670 0.92333 1.21653 0.98767 1.01281 0.92928 1.21946 0.96398 0.97237 0.99954 1.20825 0.95978 0.92595 0.85899 0.96155 1.21726 0.96767 1.00898 0.99194 1.44313 1.08023 1.69063 1.11245 1.19508 0.85508 1.07548 1.25359 0.90680 1.25891 1.00041 0.96191 1.02883 1.70176 1.30509 1.18585 1.38891 0.85312 0.80738 0.77695 0.77448 1.18587 1.21606 1.22628 1.20710 0.88793 0.91354 0.93554 1.25809 0.85559 0.97044 0.95233 1.84415 1.16723 1.68353 1.37612 0.91710 0.92155 0.88418 0.86783 0.86797 0.75041 0.89834 0.91118 0.88487 0.92613 0.93428 0.90258 0.94275 0.94662 0.93878 0.98699 0.72739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 113.37 1.25 1.46 16 2 O -0.41 -6.92 10.69 -148.98 -1.59 -8.51 16 3 C 0.16 2.27 6.56 71.23 0.47 2.74 16 4 C 0.19 4.50 7.93 88.39 0.70 5.21 16 5 N -0.46 -13.30 11.06 -293.03 -3.24 -16.54 16 6 C -0.10 -3.14 6.99 40.41 0.28 -2.86 16 7 C 0.59 23.63 7.78 86.66 0.67 24.30 16 8 O -0.57 -27.16 16.55 -4.06 -0.07 -27.23 16 9 N -0.69 -25.82 5.08 -445.43 -2.26 -28.08 16 10 C 0.13 5.37 2.60 45.07 0.12 5.49 16 11 H 0.06 2.73 7.58 -2.39 -0.02 2.71 16 12 C -0.11 -3.46 5.35 30.62 0.16 -3.29 16 13 C -0.12 -3.74 5.37 30.67 0.16 -3.57 16 14 C 0.15 6.20 3.50 44.97 0.16 6.35 16 15 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 16 C -0.13 -4.68 7.96 71.98 0.57 -4.11 16 17 N -0.60 -31.17 2.98 -675.23 -2.01 -33.18 16 18 C -0.25 -14.10 8.54 84.04 0.72 -13.38 16 19 H 0.08 4.09 6.27 -2.91 -0.02 4.07 16 20 C -0.06 -3.26 4.97 84.86 0.42 -2.84 16 21 N -0.94 -58.86 11.21 21.65 0.24 -58.62 16 22 Si 0.96 47.83 29.58 68.60 2.03 49.86 16 23 H -0.26 -12.23 7.11 99.48 0.71 -11.52 16 24 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 25 H -0.30 -15.26 7.11 99.48 0.71 -14.55 16 26 C 0.18 9.51 4.84 86.36 0.42 9.93 16 27 C 0.04 0.99 11.95 67.32 0.80 1.79 16 28 O -0.19 -4.34 10.73 0.34 0.00 -4.33 16 29 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.11 1.23 8.14 -2.38 -0.02 1.21 16 34 H 0.41 13.28 8.33 -92.70 -0.77 12.50 16 35 H 0.08 2.21 8.14 -2.38 -0.02 2.20 16 36 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 38 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 39 H 0.05 1.77 7.44 -2.39 -0.02 1.75 16 40 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 41 H 0.04 1.57 7.63 -2.39 -0.02 1.56 16 42 H 0.24 15.02 8.31 -92.71 -0.77 14.25 16 43 H 0.04 2.66 6.17 -2.39 -0.01 2.65 16 44 H 0.00 -0.28 8.14 -2.38 -0.02 -0.29 16 45 H 0.26 5.16 8.06 -2.91 -0.02 5.14 16 Total: -1.00 -79.98 372.04 0.25 -79.73 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: 0.23 Total: 19.68 kcal Atomic # 6 Polarization: 20.32 SS G_CDS: 6.91 Total: 27.23 kcal Atomic # 7 Polarization: -129.15 SS G_CDS: -7.27 Total: -136.43 kcal Atomic # 8 Polarization: -38.42 SS G_CDS: -1.66 Total: -40.07 kcal Atomic # 14 Polarization: 47.83 SS G_CDS: 2.03 Total: 49.86 kcal Total: -79.98 0.25 -79.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071949973.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.404 kcal (2) G-P(sol) polarization free energy of solvation -79.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds