Wall clock time and date at job start Tue Mar 31 2020 14:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 114.00137 * 2 1 4 4 C 1.50708 * 109.47308 * 180.02562 * 3 2 1 5 5 N 1.30011 * 127.33253 * 270.15153 * 4 3 2 6 6 O 1.20660 * 112.30103 * 180.27093 * 5 4 3 7 7 C 1.33493 * 113.15461 * 359.73148 * 6 5 4 8 8 C 1.37358 * 106.34319 * 359.97438 * 7 6 5 9 9 C 1.47396 * 128.56832 * 179.97438 * 8 7 6 10 10 O 1.21606 * 120.00396 * 180.02562 * 9 8 7 11 11 N 1.34777 * 119.99768 * 0.02562 * 9 8 7 12 12 C 1.46501 * 119.99877 * 179.97438 * 11 9 8 13 13 H 1.08993 * 109.50242 * 324.93534 * 12 11 9 14 14 C 1.53047 * 109.49808 * 204.83599 * 12 11 9 15 15 C 1.53036 * 109.53815 * 178.68599 * 14 12 11 16 16 C 1.52756 * 109.38743 * 61.24131 * 15 14 12 17 17 H 1.08996 * 109.43377 * 65.42052 * 16 15 14 18 18 C 1.52999 * 109.51290 * 185.70446 * 16 15 14 19 19 N 1.46926 * 109.00656 * 305.58704 * 16 15 14 20 20 C 1.36935 * 120.63133 * 233.58120 * 19 16 15 21 21 H 1.07997 * 119.99954 * 29.66632 * 20 19 16 22 22 C 1.38817 * 119.99870 * 209.66451 * 20 19 16 23 23 N 1.31615 * 119.99959 * 15.25257 * 22 20 19 24 24 Si 1.86799 * 119.99733 * 195.51821 * 22 20 19 25 25 H 1.48498 * 109.47177 * 60.00706 * 24 22 20 26 26 H 1.48500 * 109.46997 * 180.02562 * 24 22 20 27 27 H 1.48495 * 109.47484 * 300.00400 * 24 22 20 28 28 C 1.46934 * 118.73849 * 53.30932 * 19 16 15 29 29 H 1.08997 * 109.47049 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46850 * 299.99854 * 1 2 3 31 31 H 1.08995 * 109.46864 * 59.99832 * 1 2 3 32 32 H 1.08994 * 109.47465 * 60.00169 * 3 2 1 33 33 H 1.09001 * 109.47052 * 300.00109 * 3 2 1 34 34 H 1.07998 * 126.82951 * 179.97438 * 7 6 5 35 35 H 0.96998 * 120.00042 * 0.02562 * 11 9 8 36 36 H 1.08999 * 109.46247 * 298.70675 * 14 12 11 37 37 H 1.09004 * 109.45841 * 58.67973 * 14 12 11 38 38 H 1.09004 * 109.49935 * 181.32344 * 15 14 12 39 39 H 1.09007 * 109.49701 * 301.41013 * 15 14 12 40 40 H 1.08995 * 109.47226 * 179.52379 * 18 16 15 41 41 H 1.08993 * 109.47278 * 299.53011 * 18 16 15 42 42 H 1.09003 * 109.46703 * 59.52611 * 18 16 15 43 43 H 0.97008 * 120.00145 * 179.97438 * 23 22 20 44 44 H 1.09001 * 109.58397 * 66.42805 * 28 19 16 45 45 H 1.08995 * 109.58643 * 186.85343 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 7 4.2988 1.1213 1.0328 6 8 5.4608 1.0354 0.7194 7 6 5.6485 1.0230 -0.6022 8 6 4.4015 1.1156 -1.1706 9 6 4.0429 1.1441 -2.6000 10 8 2.8765 1.2308 -2.9327 11 7 5.0079 1.0740 -3.5383 12 6 4.6515 1.1017 -4.9590 13 1 3.7062 0.5797 -5.1073 14 6 5.7489 0.4141 -5.7745 15 6 5.3621 0.4136 -7.2552 16 6 5.2266 1.8543 -7.7444 17 1 6.2000 2.3432 -7.7065 18 6 4.7028 1.8588 -9.1820 19 7 4.2826 2.5684 -6.8740 20 6 3.2071 3.2292 -7.4049 21 1 2.7567 2.8786 -8.3218 22 6 2.6957 4.3497 -6.7646 23 7 3.4021 4.9554 -5.8338 24 14 1.0019 4.9932 -7.2187 25 1 -0.0129 3.9396 -6.9630 26 1 0.6907 6.1905 -6.3972 27 1 0.9815 5.3614 -8.6571 28 6 4.5111 2.5550 -5.4226 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.6887 1.8463 0.8899 33 1 1.6886 1.8463 -0.8900 34 1 6.5930 0.9539 -1.1213 35 1 5.9382 1.0044 -3.2730 36 1 6.6884 0.9514 -5.6449 37 1 5.8676 -0.6132 -5.4301 38 1 6.1329 -0.0970 -7.8325 39 1 4.4103 -0.1023 -7.3824 40 1 4.5984 2.8872 -9.5274 41 1 5.4044 1.3286 -9.8259 42 1 3.7324 1.3635 -9.2166 43 1 3.0450 5.7387 -5.3866 44 1 5.4250 3.1022 -5.1916 45 1 3.6660 3.0204 -4.9154 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071986643.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:06 Heat of formation + Delta-G solvation = -20.984092 kcal Electronic energy + Delta-G solvation = -28323.317994 eV Core-core repulsion = 24344.180462 eV Total energy + Delta-G solvation = -3979.137532 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -46.09200 -40.90830 -39.27370 -38.93696 -36.05134 -35.12264 -34.67705 -33.46220 -31.95818 -31.65131 -29.44348 -27.84049 -27.05304 -26.70720 -25.42436 -23.96333 -22.46315 -22.35618 -21.48618 -20.94706 -19.33032 -18.93390 -18.31986 -17.90681 -17.39823 -17.30912 -16.95402 -16.70982 -16.26521 -15.95271 -15.66920 -15.44754 -15.21938 -14.99075 -14.64393 -14.41458 -14.10668 -13.68194 -13.47161 -13.41810 -13.06146 -12.76338 -12.70892 -12.61584 -12.56865 -12.55218 -12.28408 -12.13273 -11.98061 -11.65342 -11.43853 -11.31337 -11.15618 -11.08053 -10.85374 -10.80128 -10.52358 -10.10169 -8.59701 -7.85092 -5.30516 0.05996 0.47225 1.40517 1.45545 1.49525 1.83166 2.13666 2.21473 2.50504 2.61752 3.01376 3.31047 3.34530 3.67292 3.73409 3.91234 4.00667 4.11491 4.12776 4.20790 4.29120 4.41125 4.41537 4.46731 4.59511 4.61452 4.66716 4.73682 4.74378 4.83317 4.91757 5.03286 5.10369 5.21626 5.31868 5.35540 5.45886 5.56870 5.63460 5.71906 5.81942 5.94909 6.42027 6.56180 7.07378 7.16834 7.24710 7.91908 8.40448 9.19946 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.011778 B = 0.004073 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2376.654678 B = 6873.176409 C = 8132.663713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.406 6.406 3 C 0.141 3.859 4 C 0.040 3.960 5 N -0.354 5.354 6 O 0.117 5.883 7 C 0.038 3.962 8 C -0.266 4.266 9 C 0.587 3.413 10 O -0.573 6.573 11 N -0.695 5.695 12 C 0.133 3.867 13 H 0.050 0.950 14 C -0.107 4.107 15 C -0.119 4.119 16 C 0.154 3.846 17 H 0.024 0.976 18 C -0.131 4.131 19 N -0.603 5.603 20 C -0.251 4.251 21 H 0.072 0.928 22 C -0.051 4.051 23 N -0.932 5.932 24 Si 0.953 3.047 25 H -0.287 1.287 26 H -0.297 1.297 27 H -0.268 1.268 28 C 0.180 3.820 29 H 0.105 0.895 30 H 0.063 0.937 31 H 0.039 0.961 32 H 0.085 0.915 33 H 0.067 0.933 34 H 0.288 0.712 35 H 0.416 0.584 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.050 0.950 40 H 0.036 0.964 41 H 0.078 0.922 42 H 0.044 0.956 43 H 0.244 0.756 44 H 0.003 0.997 45 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.837 -11.773 8.934 16.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.325 6.325 3 C 0.064 3.936 4 C -0.122 4.122 5 N -0.058 5.058 6 O 0.053 5.947 7 C -0.044 4.044 8 C -0.274 4.274 9 C 0.374 3.626 10 O -0.452 6.452 11 N -0.347 5.347 12 C 0.027 3.973 13 H 0.069 0.931 14 C -0.145 4.145 15 C -0.159 4.159 16 C 0.049 3.951 17 H 0.042 0.958 18 C -0.188 4.188 19 N -0.328 5.328 20 C -0.381 4.381 21 H 0.090 0.910 22 C -0.246 4.246 23 N -0.578 5.578 24 Si 0.782 3.218 25 H -0.214 1.214 26 H -0.224 1.224 27 H -0.194 1.194 28 C 0.052 3.948 29 H 0.124 0.876 30 H 0.081 0.919 31 H 0.058 0.942 32 H 0.103 0.897 33 H 0.085 0.915 34 H 0.303 0.697 35 H 0.253 0.747 36 H 0.098 0.902 37 H 0.106 0.894 38 H 0.115 0.885 39 H 0.068 0.932 40 H 0.056 0.944 41 H 0.097 0.903 42 H 0.063 0.937 43 H 0.053 0.947 44 H 0.021 0.979 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 6.863 -11.730 10.060 16.908 hybrid contribution -1.264 1.244 -0.815 1.952 sum 5.599 -10.485 9.245 15.059 Atomic orbital electron populations 1.22973 0.78481 1.04359 1.00982 1.87834 1.22233 1.26765 1.95656 1.20530 0.84710 0.86001 1.02342 1.24531 0.97857 1.02143 0.87627 1.73641 0.90181 1.18525 1.23481 1.84549 1.20499 1.65546 1.24118 1.27323 1.00591 0.93930 0.82552 1.22246 0.94584 1.16285 0.94304 1.17181 0.85328 0.75988 0.84114 1.90812 1.20759 1.51051 1.82612 1.45607 1.09752 1.73694 1.05620 1.21569 0.98747 0.98205 0.78795 0.93123 1.21656 0.97048 1.00911 0.94845 1.21891 1.01707 0.96786 0.95474 1.20716 0.91647 0.91890 0.90857 0.95820 1.21744 1.00693 1.00855 0.95505 1.44300 1.27613 1.59744 1.01098 1.19412 1.05713 1.04396 1.08595 0.90995 1.25755 1.01747 0.96827 1.00269 1.70137 1.37230 1.20843 1.29601 0.85552 0.81297 0.77006 0.77968 1.21358 1.22359 1.19353 1.20771 0.97885 0.91687 0.84414 0.87645 0.91889 0.94191 0.89711 0.91467 0.69716 0.74682 0.90208 0.89384 0.88458 0.93165 0.94435 0.90277 0.93702 0.94692 0.97920 0.94157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 11.01 113.37 1.25 1.89 16 2 O -0.41 -12.83 10.69 -148.98 -1.59 -14.42 16 3 C 0.14 4.38 6.19 71.24 0.44 4.82 16 4 C 0.04 1.24 7.21 45.16 0.33 1.56 16 5 N -0.35 -9.65 12.01 -44.78 -0.54 -10.19 16 6 O 0.12 2.39 11.06 76.98 0.85 3.24 16 7 C 0.04 0.61 11.85 67.61 0.80 1.41 16 8 C -0.27 -7.44 6.47 -18.75 -0.12 -7.56 16 9 C 0.59 20.74 7.78 86.65 0.67 21.41 16 10 O -0.57 -26.67 15.36 -4.05 -0.06 -26.73 16 11 N -0.70 -20.36 5.08 -445.46 -2.26 -22.62 16 12 C 0.13 4.86 2.60 45.07 0.12 4.98 16 13 H 0.05 2.22 7.58 -2.39 -0.02 2.20 16 14 C -0.11 -2.84 5.35 30.62 0.16 -2.67 16 15 C -0.12 -3.48 5.34 30.52 0.16 -3.31 16 16 C 0.15 5.87 3.48 44.83 0.16 6.03 16 17 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 18 C -0.13 -4.58 7.94 71.98 0.57 -4.01 16 19 N -0.60 -29.79 2.99 -676.03 -2.02 -31.81 16 20 C -0.25 -13.88 8.57 84.03 0.72 -13.16 16 21 H 0.07 3.85 6.23 -2.91 -0.02 3.84 16 22 C -0.05 -2.94 4.94 84.86 0.42 -2.52 16 23 N -0.93 -57.07 11.22 21.65 0.24 -56.83 16 24 Si 0.95 47.22 29.58 68.60 2.03 49.25 16 25 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 26 H -0.30 -14.88 7.11 99.48 0.71 -14.18 16 27 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 28 C 0.18 8.65 4.86 86.36 0.42 9.07 16 29 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.07 2.38 7.11 -2.39 -0.02 2.36 16 34 H 0.29 0.77 7.68 -2.91 -0.02 0.75 16 35 H 0.42 7.64 7.79 -92.71 -0.72 6.92 16 36 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 38 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 40 H 0.04 1.47 7.62 -2.39 -0.02 1.45 16 41 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 42 H 0.04 1.63 7.44 -2.39 -0.02 1.61 16 43 H 0.24 14.75 8.31 -92.70 -0.77 13.98 16 44 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 45 H 0.04 2.37 6.14 -2.39 -0.01 2.36 16 Total: -1.00 -82.53 368.40 3.04 -79.50 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: 0.29 Total: 12.68 kcal Atomic # 6 Polarization: 11.84 SS G_CDS: 6.10 Total: 17.94 kcal Atomic # 7 Polarization: -116.87 SS G_CDS: -4.58 Total: -121.45 kcal Atomic # 8 Polarization: -37.11 SS G_CDS: -0.80 Total: -37.91 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 2.03 Total: 49.25 kcal Total: -82.53 3.04 -79.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071986643.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.512 kcal (2) G-P(sol) polarization free energy of solvation -82.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds