Wall clock time and date at job start Tue Mar 31 2020 14:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 114.00332 * 2 1 4 4 C 1.50697 * 109.46998 * 180.02562 * 3 2 1 5 5 N 1.30018 * 127.33427 * 269.99434 * 4 3 2 6 6 O 1.20655 * 112.30444 * 180.02562 * 5 4 3 7 7 C 1.33498 * 113.15618 * 359.75518 * 6 5 4 8 8 C 1.37364 * 106.33730 * 0.39110 * 7 6 5 9 9 C 1.47391 * 128.55942 * 179.90965 * 8 7 6 10 10 O 1.21612 * 119.99971 * 179.67709 * 9 8 7 11 11 N 1.34782 * 120.00370 * 359.67567 * 9 8 7 12 12 C 1.46496 * 119.99852 * 179.97438 * 11 9 8 13 13 H 1.08996 * 109.50515 * 35.06491 * 12 11 9 14 14 C 1.53043 * 109.52498 * 155.14728 * 12 11 9 15 15 C 1.53041 * 109.53824 * 58.59948 * 14 12 11 16 16 C 1.53191 * 109.31116 * 61.36713 * 15 14 12 17 17 H 1.08997 * 109.58473 * 65.15655 * 16 15 14 18 18 C 1.53005 * 109.58702 * 185.57898 * 16 15 14 19 19 N 1.46924 * 108.77784 * 305.36625 * 16 15 14 20 20 C 1.36944 * 120.63067 * 233.88312 * 19 16 15 21 21 H 1.08004 * 119.99577 * 40.66750 * 20 19 16 22 22 C 1.38810 * 119.99671 * 220.66216 * 20 19 16 23 23 N 1.31617 * 119.99844 * 214.92463 * 22 20 19 24 24 Si 1.86795 * 120.00095 * 34.92856 * 22 20 19 25 25 H 1.48497 * 109.47312 * 84.63019 * 24 22 20 26 26 H 1.48502 * 109.47041 * 204.62791 * 24 22 20 27 27 H 1.48496 * 109.47194 * 324.62661 * 24 22 20 28 28 C 1.46926 * 118.73840 * 53.60551 * 19 16 15 29 29 H 1.08994 * 109.47609 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46804 * 300.00264 * 1 2 3 31 31 H 1.08997 * 109.47091 * 59.99710 * 1 2 3 32 32 H 1.08997 * 109.46933 * 60.00171 * 3 2 1 33 33 H 1.09000 * 109.47015 * 299.99630 * 3 2 1 34 34 H 1.08001 * 126.82958 * 180.30136 * 7 6 5 35 35 H 0.96994 * 119.99582 * 0.02562 * 11 9 8 36 36 H 1.08998 * 109.46560 * 178.62223 * 14 12 11 37 37 H 1.09001 * 109.45873 * 298.59857 * 14 12 11 38 38 H 1.08995 * 109.50165 * 181.32415 * 15 14 12 39 39 H 1.08997 * 109.49767 * 301.38512 * 15 14 12 40 40 H 1.08999 * 109.47236 * 179.29311 * 18 16 15 41 41 H 1.09005 * 109.47030 * 299.29473 * 18 16 15 42 42 H 1.09002 * 109.46784 * 59.28918 * 18 16 15 43 43 H 0.96992 * 120.00338 * 180.02562 * 23 22 20 44 44 H 1.09001 * 109.58561 * 66.18284 * 28 19 16 45 45 H 1.09001 * 109.58747 * 186.45936 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1864 -0.0006 5 7 4.2990 1.1239 1.0328 6 8 5.4606 1.0324 0.7194 7 6 5.6477 1.0128 -0.6022 8 6 4.4015 1.1166 -1.1705 9 6 4.0431 1.1447 -2.5999 10 8 2.8769 1.2361 -2.9327 11 7 5.0076 1.0690 -3.5383 12 6 4.6512 1.0963 -4.9589 13 1 3.7956 1.7552 -5.1069 14 6 5.8394 1.6113 -5.7746 15 6 7.0508 0.7055 -5.5420 16 6 6.7199 -0.7140 -6.0133 17 1 6.5652 -0.7141 -7.0922 18 6 7.8732 -1.6545 -5.6575 19 7 5.4934 -1.1620 -5.3398 20 6 5.4709 -2.3403 -4.6423 21 1 6.3129 -2.6191 -4.0260 22 6 4.3660 -3.1762 -4.7274 23 7 3.9831 -3.8699 -3.6764 24 14 3.4226 -3.3167 -6.3335 25 1 4.0808 -4.3203 -7.2081 26 1 2.0282 -3.7434 -6.0528 27 1 3.4088 -1.9982 -7.0164 28 6 4.2931 -0.3188 -5.4236 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.6887 1.8463 0.8900 33 1 1.6887 1.8464 -0.8900 34 1 6.5915 0.9328 -1.1213 35 1 5.9377 0.9957 -3.2729 36 1 5.5816 1.6081 -6.8336 37 1 6.0808 2.6274 -5.4626 38 1 7.9032 1.0863 -6.1047 39 1 7.2943 0.6892 -4.4797 40 1 7.6304 -2.6663 -5.9823 41 1 8.7820 -1.3204 -6.1580 42 1 8.0287 -1.6467 -4.5787 43 1 3.2113 -4.4543 -3.7359 44 1 3.9404 -0.2867 -6.4545 45 1 3.5125 -0.7295 -4.7831 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071986644.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:10 Heat of formation + Delta-G solvation = 10.055798 kcal Electronic energy + Delta-G solvation = -29121.263436 eV Core-core repulsion = 25143.471894 eV Total energy + Delta-G solvation = -3977.791541 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.84050 -39.60017 -37.90606 -37.55176 -34.27609 -33.85575 -32.75712 -32.15907 -30.71771 -30.47421 -28.22537 -26.50851 -25.67916 -24.99878 -24.28876 -22.46475 -21.22710 -20.98289 -20.32392 -18.92744 -18.23520 -17.68795 -16.75782 -16.45316 -16.18186 -15.67666 -15.42219 -15.29213 -14.99762 -14.47218 -14.32381 -13.95675 -13.72463 -13.48221 -13.27952 -12.94732 -12.57633 -12.45670 -12.28766 -12.20495 -11.77223 -11.44342 -11.41878 -11.36311 -11.23967 -10.96101 -10.62591 -10.48758 -10.28714 -10.08143 -9.95258 -9.87151 -9.74166 -9.60529 -9.52747 -9.44852 -8.63190 -8.26470 -6.68401 -6.04225 -3.34843 1.23622 1.73984 3.01011 3.40133 3.43766 3.54353 3.57594 3.68715 3.86094 4.23369 4.51596 4.61356 4.89928 4.97032 5.09372 5.17602 5.24605 5.28585 5.29447 5.36179 5.41533 5.43604 5.51161 5.68335 5.78700 5.79424 5.87598 5.94433 6.01668 6.14487 6.24497 6.28251 6.31842 6.43894 6.48017 6.54802 6.90556 6.98275 7.01534 7.07540 7.18224 7.88258 8.06096 8.23241 8.43202 8.59415 9.01724 9.75665 10.23014 11.10686 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.011482 B = 0.005214 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2438.073582 B = 5368.756214 C = 6408.189433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.376 6.376 3 C 0.144 3.856 4 C 0.063 3.937 5 N -0.343 5.343 6 O 0.102 5.898 7 C -0.010 4.010 8 C -0.223 4.223 9 C 0.597 3.403 10 O -0.534 6.534 11 N -0.692 5.692 12 C 0.128 3.872 13 H 0.081 0.919 14 C -0.119 4.119 15 C -0.130 4.130 16 C 0.162 3.838 17 H 0.026 0.974 18 C -0.133 4.133 19 N -0.590 5.590 20 C -0.277 4.277 21 H 0.075 0.925 22 C 0.054 3.946 23 N -0.873 5.873 24 Si 0.842 3.158 25 H -0.290 1.290 26 H -0.298 1.298 27 H -0.262 1.262 28 C 0.132 3.868 29 H 0.089 0.911 30 H 0.039 0.961 31 H 0.046 0.954 32 H 0.064 0.936 33 H 0.087 0.913 34 H 0.226 0.774 35 H 0.395 0.605 36 H 0.072 0.928 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.063 0.937 41 H 0.037 0.963 42 H 0.054 0.946 43 H 0.263 0.737 44 H 0.032 0.968 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.039 13.740 2.933 14.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.294 6.294 3 C 0.067 3.933 4 C -0.099 4.099 5 N -0.049 5.049 6 O 0.039 5.961 7 C -0.092 4.092 8 C -0.230 4.230 9 C 0.383 3.617 10 O -0.412 6.412 11 N -0.342 5.342 12 C 0.022 3.978 13 H 0.099 0.901 14 C -0.157 4.157 15 C -0.170 4.170 16 C 0.056 3.944 17 H 0.044 0.956 18 C -0.190 4.190 19 N -0.314 5.314 20 C -0.405 4.405 21 H 0.092 0.908 22 C -0.150 4.150 23 N -0.511 5.511 24 Si 0.669 3.331 25 H -0.217 1.217 26 H -0.225 1.225 27 H -0.187 1.187 28 C 0.006 3.994 29 H 0.107 0.893 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.105 0.895 34 H 0.242 0.758 35 H 0.230 0.770 36 H 0.091 0.909 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.056 0.944 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.050 0.950 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.998 13.494 4.086 14.240 hybrid contribution -0.364 -0.302 -1.691 1.756 sum 1.634 13.192 2.396 13.507 Atomic orbital electron populations 1.22745 0.80369 1.03152 0.99835 1.88002 1.20034 1.25944 1.95400 1.20521 0.84359 0.86378 1.02047 1.24316 0.97358 1.01365 0.86894 1.73615 0.89595 1.18070 1.23622 1.84545 1.21594 1.66603 1.23357 1.26346 1.00472 0.98692 0.83664 1.22392 0.92524 1.12152 0.95950 1.16674 0.85585 0.76615 0.82833 1.90749 1.18341 1.50337 1.81819 1.45607 1.09155 1.73366 1.06103 1.21580 0.97260 0.99830 0.79158 0.90148 1.21696 0.95544 0.98263 1.00187 1.22050 0.96501 0.97509 1.00898 1.20591 0.88306 0.91167 0.94360 0.95595 1.21751 0.95615 1.00420 1.01226 1.44295 1.06616 1.20823 1.59672 1.18455 1.05143 0.95743 1.21114 0.90786 1.25567 0.97061 0.96170 0.96203 1.70079 1.24811 1.28954 1.27292 0.87384 0.78521 0.79008 0.88189 1.21687 1.22498 1.18668 1.21719 0.90803 0.88636 0.98278 0.89285 0.94289 0.93545 0.91812 0.89491 0.75759 0.76960 0.90924 0.92503 0.92504 0.92482 0.91835 0.94444 0.92687 0.92752 0.95019 0.90787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.47 11.01 101.05 1.11 1.58 16 2 O -0.38 -6.76 10.69 -35.23 -0.38 -7.13 16 3 C 0.14 2.27 6.20 36.00 0.22 2.49 16 4 C 0.06 1.07 7.21 -79.77 -0.58 0.50 16 5 N -0.34 -5.56 12.01 34.78 0.42 -5.14 16 6 O 0.10 1.43 11.06 18.64 0.21 1.64 16 7 C -0.01 -0.13 11.85 30.41 0.36 0.23 16 8 C -0.22 -3.66 6.47 -102.90 -0.67 -4.32 16 9 C 0.60 10.96 7.78 -12.53 -0.10 10.87 16 10 O -0.53 -11.40 15.36 5.27 0.08 -11.32 16 11 N -0.69 -11.21 4.91 -54.78 -0.27 -11.48 16 12 C 0.13 2.13 2.81 -67.81 -0.19 1.94 16 13 H 0.08 1.35 7.58 -51.93 -0.39 0.96 16 14 C -0.12 -1.59 5.59 -26.69 -0.15 -1.73 16 15 C -0.13 -1.79 5.21 -26.61 -0.14 -1.92 16 16 C 0.16 2.85 3.50 -67.60 -0.24 2.62 16 17 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 18 C -0.13 -2.24 8.06 37.16 0.30 -1.94 16 19 N -0.59 -12.80 2.39 -164.77 -0.39 -13.19 16 20 C -0.28 -7.20 8.43 -15.06 -0.13 -7.33 16 21 H 0.07 2.06 6.81 -52.48 -0.36 1.70 16 22 C 0.05 1.51 4.81 -17.43 -0.08 1.42 16 23 N -0.87 -26.42 13.97 55.49 0.78 -25.65 16 24 Si 0.84 21.61 27.37 -169.99 -4.65 16.96 16 25 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 26 H -0.30 -7.91 7.11 56.52 0.40 -7.51 16 27 H -0.26 -6.42 5.24 56.52 0.30 -6.12 16 28 C 0.13 2.80 4.19 -3.71 -0.02 2.79 16 29 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.09 1.35 7.11 -51.93 -0.37 0.99 16 34 H 0.23 1.81 7.68 -52.49 -0.40 1.40 16 35 H 0.40 5.47 5.96 -40.82 -0.24 5.23 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.76 6.41 -51.93 -0.33 0.42 16 40 H 0.06 1.21 7.68 -51.93 -0.40 0.82 16 41 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.05 0.96 7.41 -51.93 -0.38 0.57 16 43 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 44 H 0.03 0.68 6.72 -51.93 -0.35 0.33 16 45 H 0.07 1.87 6.97 -51.93 -0.36 1.51 16 LS Contribution 362.26 15.07 5.46 5.46 Total: -1.00 -34.11 362.26 -5.68 -39.78 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -6.64 Total: 2.88 kcal Atomic # 6 Polarization: 7.47 SS G_CDS: -0.28 Total: 7.18 kcal Atomic # 7 Polarization: -55.98 SS G_CDS: 0.53 Total: -55.45 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: -0.09 Total: -16.82 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.65 Total: 16.96 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.11 -5.68 -39.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071986644.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.839 kcal (2) G-P(sol) polarization free energy of solvation -34.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds