Wall clock time and date at job start Tue Mar 31 2020 14:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 114.00332 * 2 1 4 4 C 1.50697 * 109.46998 * 180.02562 * 3 2 1 5 5 N 1.30018 * 127.33427 * 269.99434 * 4 3 2 6 6 O 1.20655 * 112.30444 * 180.02562 * 5 4 3 7 7 C 1.33498 * 113.15618 * 359.75518 * 6 5 4 8 8 C 1.37364 * 106.33730 * 0.39110 * 7 6 5 9 9 C 1.47391 * 128.55942 * 179.90965 * 8 7 6 10 10 O 1.21612 * 119.99971 * 179.67709 * 9 8 7 11 11 N 1.34782 * 120.00370 * 359.67567 * 9 8 7 12 12 C 1.46496 * 119.99852 * 179.97438 * 11 9 8 13 13 H 1.08996 * 109.50515 * 35.06491 * 12 11 9 14 14 C 1.53043 * 109.52498 * 155.14728 * 12 11 9 15 15 C 1.53041 * 109.53824 * 58.59948 * 14 12 11 16 16 C 1.53191 * 109.31116 * 61.36713 * 15 14 12 17 17 H 1.08997 * 109.58473 * 65.15655 * 16 15 14 18 18 C 1.53005 * 109.58702 * 185.57898 * 16 15 14 19 19 N 1.46924 * 108.77784 * 305.36625 * 16 15 14 20 20 C 1.36944 * 120.63067 * 233.88312 * 19 16 15 21 21 H 1.08004 * 119.99577 * 40.66750 * 20 19 16 22 22 C 1.38810 * 119.99671 * 220.66216 * 20 19 16 23 23 N 1.31617 * 119.99844 * 214.92463 * 22 20 19 24 24 Si 1.86795 * 120.00095 * 34.92856 * 22 20 19 25 25 H 1.48497 * 109.47312 * 84.63019 * 24 22 20 26 26 H 1.48502 * 109.47041 * 204.62791 * 24 22 20 27 27 H 1.48496 * 109.47194 * 324.62661 * 24 22 20 28 28 C 1.46926 * 118.73840 * 53.60551 * 19 16 15 29 29 H 1.08994 * 109.47609 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46804 * 300.00264 * 1 2 3 31 31 H 1.08997 * 109.47091 * 59.99710 * 1 2 3 32 32 H 1.08997 * 109.46933 * 60.00171 * 3 2 1 33 33 H 1.09000 * 109.47015 * 299.99630 * 3 2 1 34 34 H 1.08001 * 126.82958 * 180.30136 * 7 6 5 35 35 H 0.96994 * 119.99582 * 0.02562 * 11 9 8 36 36 H 1.08998 * 109.46560 * 178.62223 * 14 12 11 37 37 H 1.09001 * 109.45873 * 298.59857 * 14 12 11 38 38 H 1.08995 * 109.50165 * 181.32415 * 15 14 12 39 39 H 1.08997 * 109.49767 * 301.38512 * 15 14 12 40 40 H 1.08999 * 109.47236 * 179.29311 * 18 16 15 41 41 H 1.09005 * 109.47030 * 299.29473 * 18 16 15 42 42 H 1.09002 * 109.46784 * 59.28918 * 18 16 15 43 43 H 0.96992 * 120.00338 * 180.02562 * 23 22 20 44 44 H 1.09001 * 109.58561 * 66.18284 * 28 19 16 45 45 H 1.09001 * 109.58747 * 186.45936 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1864 -0.0006 5 7 4.2990 1.1239 1.0328 6 8 5.4606 1.0324 0.7194 7 6 5.6477 1.0128 -0.6022 8 6 4.4015 1.1166 -1.1705 9 6 4.0431 1.1447 -2.5999 10 8 2.8769 1.2361 -2.9327 11 7 5.0076 1.0690 -3.5383 12 6 4.6512 1.0963 -4.9589 13 1 3.7956 1.7552 -5.1069 14 6 5.8394 1.6113 -5.7746 15 6 7.0508 0.7055 -5.5420 16 6 6.7199 -0.7140 -6.0133 17 1 6.5652 -0.7141 -7.0922 18 6 7.8732 -1.6545 -5.6575 19 7 5.4934 -1.1620 -5.3398 20 6 5.4709 -2.3403 -4.6423 21 1 6.3129 -2.6191 -4.0260 22 6 4.3660 -3.1762 -4.7274 23 7 3.9831 -3.8699 -3.6764 24 14 3.4226 -3.3167 -6.3335 25 1 4.0808 -4.3203 -7.2081 26 1 2.0282 -3.7434 -6.0528 27 1 3.4088 -1.9982 -7.0164 28 6 4.2931 -0.3188 -5.4236 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.6887 1.8463 0.8900 33 1 1.6887 1.8464 -0.8900 34 1 6.5915 0.9328 -1.1213 35 1 5.9377 0.9957 -3.2729 36 1 5.5816 1.6081 -6.8336 37 1 6.0808 2.6274 -5.4626 38 1 7.9032 1.0863 -6.1047 39 1 7.2943 0.6892 -4.4797 40 1 7.6304 -2.6663 -5.9823 41 1 8.7820 -1.3204 -6.1580 42 1 8.0287 -1.6467 -4.5787 43 1 3.2113 -4.4543 -3.7359 44 1 3.9404 -0.2867 -6.4545 45 1 3.5125 -0.7295 -4.7831 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071986644.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:09 Heat of formation + Delta-G solvation = -15.305177 kcal Electronic energy + Delta-G solvation = -29122.363170 eV Core-core repulsion = 25143.471894 eV Total energy + Delta-G solvation = -3978.891276 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -46.03904 -41.00755 -39.27247 -38.89310 -35.82505 -35.07916 -34.48544 -33.43054 -32.47952 -31.80481 -29.38427 -27.97791 -26.91094 -26.61344 -25.59841 -24.04316 -22.42210 -22.29456 -21.74932 -20.47233 -19.44801 -18.88809 -18.33206 -17.95568 -17.38342 -17.05171 -16.92637 -16.70139 -16.37325 -16.03173 -15.81570 -15.34455 -15.22052 -14.90885 -14.68241 -14.32351 -14.29357 -13.86935 -13.57857 -13.41802 -13.37625 -12.94426 -12.70484 -12.56563 -12.55272 -12.54490 -12.45126 -12.12385 -11.78506 -11.56528 -11.35879 -11.26785 -11.18030 -11.07224 -10.80644 -10.75844 -10.48583 -9.96385 -8.52795 -8.22059 -5.44094 0.09744 0.50643 1.33633 1.40432 1.46084 1.86580 2.15237 2.39293 2.49413 2.70366 2.98715 3.06491 3.37077 3.47917 3.78509 3.90593 4.02935 4.09673 4.14413 4.20019 4.25093 4.40419 4.41661 4.47197 4.60243 4.63576 4.67099 4.71649 4.75035 4.78834 4.88623 5.05665 5.06532 5.15041 5.18841 5.29467 5.34871 5.61192 5.61778 5.71076 5.97738 6.04162 6.32337 6.59273 7.08197 7.08875 7.26146 7.74064 8.23520 8.97323 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.011482 B = 0.005214 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2438.073582 B = 5368.756214 C = 6408.189433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.417 6.417 3 C 0.143 3.857 4 C 0.041 3.959 5 N -0.356 5.356 6 O 0.112 5.888 7 C 0.029 3.971 8 C -0.263 4.263 9 C 0.592 3.408 10 O -0.576 6.576 11 N -0.681 5.681 12 C 0.133 3.867 13 H 0.078 0.922 14 C -0.109 4.109 15 C -0.121 4.121 16 C 0.151 3.849 17 H 0.030 0.970 18 C -0.128 4.128 19 N -0.598 5.598 20 C -0.237 4.237 21 H 0.055 0.945 22 C -0.005 4.005 23 N -0.926 5.926 24 Si 0.887 3.113 25 H -0.291 1.291 26 H -0.316 1.316 27 H -0.245 1.245 28 C 0.133 3.867 29 H 0.091 0.909 30 H 0.069 0.931 31 H 0.047 0.953 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.276 0.724 35 H 0.409 0.591 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.065 0.935 40 H 0.031 0.969 41 H 0.077 0.923 42 H 0.046 0.954 43 H 0.255 0.745 44 H 0.030 0.970 45 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.887 16.455 2.021 17.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.336 6.336 3 C 0.066 3.934 4 C -0.121 4.121 5 N -0.061 5.061 6 O 0.048 5.952 7 C -0.053 4.053 8 C -0.271 4.271 9 C 0.379 3.621 10 O -0.457 6.457 11 N -0.332 5.332 12 C 0.027 3.973 13 H 0.096 0.904 14 C -0.147 4.147 15 C -0.160 4.160 16 C 0.047 3.953 17 H 0.048 0.952 18 C -0.185 4.185 19 N -0.323 5.323 20 C -0.367 4.367 21 H 0.073 0.927 22 C -0.203 4.203 23 N -0.569 5.569 24 Si 0.716 3.284 25 H -0.219 1.219 26 H -0.244 1.244 27 H -0.169 1.169 28 C 0.007 3.993 29 H 0.109 0.891 30 H 0.087 0.913 31 H 0.066 0.934 32 H 0.107 0.893 33 H 0.098 0.902 34 H 0.291 0.709 35 H 0.246 0.754 36 H 0.100 0.900 37 H 0.110 0.890 38 H 0.113 0.887 39 H 0.084 0.916 40 H 0.050 0.950 41 H 0.096 0.904 42 H 0.066 0.934 43 H 0.064 0.936 44 H 0.048 0.952 45 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 4.892 16.258 3.137 17.265 hybrid contribution -1.138 -1.108 -1.407 2.122 sum 3.754 15.150 1.730 15.703 Atomic orbital electron populations 1.22940 0.78445 1.03872 1.01349 1.87930 1.22417 1.27538 1.95677 1.20609 0.84157 0.85723 1.02868 1.24641 0.98154 1.01907 0.87442 1.73602 0.90171 1.18636 1.23707 1.84528 1.20763 1.65842 1.24028 1.27156 1.00883 0.94517 0.82734 1.22354 0.94213 1.15460 0.95068 1.17008 0.85328 0.75849 0.83890 1.90721 1.20072 1.52284 1.82603 1.45516 1.09513 1.72512 1.05655 1.21462 0.99417 0.96551 0.79838 0.90355 1.21691 0.93322 0.99725 0.99967 1.21969 0.97828 0.94256 1.01947 1.20919 0.86154 0.93962 0.94262 0.95210 1.21703 0.97081 0.98665 1.01081 1.44424 1.08285 1.19588 1.60025 1.18426 1.03143 0.96068 1.19032 0.92745 1.26065 0.98938 0.97315 0.98029 1.70179 1.26194 1.31605 1.28928 0.86630 0.76559 0.79496 0.85760 1.21872 1.24420 1.16923 1.21586 0.89401 0.91146 0.97194 0.89053 0.91294 0.93435 0.89259 0.90227 0.70871 0.75351 0.89992 0.88985 0.88733 0.91629 0.95019 0.90448 0.93439 0.93612 0.95187 0.95840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 11.01 113.37 1.25 2.05 16 2 O -0.42 -15.53 10.69 -148.98 -1.59 -17.12 16 3 C 0.14 4.61 6.20 71.23 0.44 5.05 16 4 C 0.04 1.38 7.21 45.15 0.33 1.71 16 5 N -0.36 -11.23 12.01 -44.78 -0.54 -11.77 16 6 O 0.11 2.90 11.06 76.95 0.85 3.75 16 7 C 0.03 0.65 11.85 67.61 0.80 1.45 16 8 C -0.26 -8.44 6.47 -18.75 -0.12 -8.57 16 9 C 0.59 21.59 7.78 86.65 0.67 22.27 16 10 O -0.58 -25.35 15.36 -4.07 -0.06 -25.42 16 11 N -0.68 -20.65 4.91 -445.46 -2.19 -22.84 16 12 C 0.13 4.17 2.81 45.07 0.13 4.29 16 13 H 0.08 2.53 7.58 -2.39 -0.02 2.51 16 14 C -0.11 -2.36 5.59 30.62 0.17 -2.19 16 15 C -0.12 -2.64 5.21 30.67 0.16 -2.48 16 16 C 0.15 4.81 3.50 44.98 0.16 4.97 16 17 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 18 C -0.13 -3.94 8.06 71.98 0.58 -3.36 16 19 N -0.60 -25.20 2.39 -675.22 -1.61 -26.81 16 20 C -0.24 -12.43 8.43 84.03 0.71 -11.72 16 21 H 0.06 3.06 6.81 -2.91 -0.02 3.04 16 22 C -0.01 -0.30 4.81 84.86 0.41 0.11 16 23 N -0.93 -58.68 13.97 21.65 0.30 -58.38 16 24 Si 0.89 46.06 27.37 68.60 1.88 47.94 16 25 H -0.29 -14.99 7.11 99.48 0.71 -14.28 16 26 H -0.32 -17.23 7.11 99.48 0.71 -16.53 16 27 H -0.25 -11.83 5.24 99.48 0.52 -11.31 16 28 C 0.13 5.57 4.19 86.36 0.36 5.93 16 29 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 30 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.08 2.61 7.11 -2.39 -0.02 2.59 16 34 H 0.28 3.01 7.68 -2.91 -0.02 2.99 16 35 H 0.41 9.79 5.96 -92.71 -0.55 9.24 16 36 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.07 1.35 6.41 -2.39 -0.02 1.33 16 40 H 0.03 1.15 7.68 -2.39 -0.02 1.14 16 41 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 42 H 0.05 1.52 7.41 -2.39 -0.02 1.50 16 43 H 0.25 15.80 8.31 -92.71 -0.77 15.03 16 44 H 0.03 1.26 6.72 -2.39 -0.02 1.24 16 45 H 0.02 1.21 6.97 -2.39 -0.02 1.19 16 Total: -1.00 -80.28 362.26 3.36 -76.92 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: 0.28 Total: 14.21 kcal Atomic # 6 Polarization: 13.48 SS G_CDS: 6.04 Total: 19.52 kcal Atomic # 7 Polarization: -115.77 SS G_CDS: -4.04 Total: -119.81 kcal Atomic # 8 Polarization: -37.98 SS G_CDS: -0.80 Total: -38.79 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 1.88 Total: 47.94 kcal Total: -80.28 3.36 -76.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071986644.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.619 kcal (2) G-P(sol) polarization free energy of solvation -80.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds