Wall clock time and date at job start Tue Mar 31 2020 13:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46814 * 2 1 4 4 H 1.08993 * 109.46893 * 304.99633 * 3 2 1 5 5 C 1.53004 * 109.46855 * 64.99849 * 3 2 1 6 6 C 1.50693 * 109.47087 * 184.99491 * 3 2 1 7 7 C 1.41265 * 126.70685 * 275.26800 * 6 3 2 8 8 C 1.36832 * 103.84426 * 180.09480 * 7 6 3 9 9 C 1.47511 * 126.94070 * 179.97438 * 8 7 6 10 10 O 1.21588 * 120.00362 * 359.71470 * 9 8 7 11 11 N 1.34775 * 119.99949 * 179.70969 * 9 8 7 12 12 C 1.46504 * 120.00113 * 180.02562 * 11 9 8 13 13 H 1.08995 * 110.88565 * 37.43055 * 12 11 9 14 14 C 1.54912 * 111.00388 * 273.54607 * 12 11 9 15 15 N 1.47419 * 104.82985 * 204.87628 * 14 12 11 16 16 C 1.36942 * 125.64839 * 204.08990 * 15 14 12 17 17 H 1.07992 * 119.99706 * 6.65716 * 16 15 14 18 18 C 1.38812 * 119.99928 * 186.65061 * 16 15 14 19 19 N 1.31619 * 119.99814 * 7.38075 * 18 16 15 20 20 Si 1.86804 * 119.99683 * 187.38332 * 18 16 15 21 21 H 1.48500 * 109.46845 * 265.01760 * 20 18 16 22 22 H 1.48500 * 109.46905 * 145.01852 * 20 18 16 23 23 H 1.48502 * 109.47029 * 25.01940 * 20 18 16 24 24 C 1.47026 * 108.70506 * 24.36095 * 15 14 12 25 25 C 1.54336 * 107.26214 * 358.57986 * 24 15 14 26 26 H 1.09004 * 110.51446 * 96.45669 * 25 24 15 27 27 O 1.42898 * 111.00273 * 219.59851 * 25 24 15 28 28 O 1.34636 * 106.11091 * 359.66844 * 8 7 6 29 29 N 1.20882 * 111.47373 * 0.21870 * 28 8 7 30 30 H 1.09000 * 109.46953 * 60.00488 * 1 2 3 31 31 H 1.09005 * 109.46997 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47721 * 299.99689 * 1 2 3 33 33 H 1.08990 * 109.47262 * 239.99721 * 2 1 3 34 34 H 1.09000 * 109.46953 * 119.99512 * 2 1 3 35 35 H 1.09002 * 109.46989 * 299.99839 * 5 3 2 36 36 H 1.09001 * 109.47365 * 59.99904 * 5 3 2 37 37 H 1.09001 * 109.46734 * 179.97438 * 5 3 2 38 38 H 1.07994 * 128.07972 * 359.97438 * 7 6 3 39 39 H 0.97002 * 120.00107 * 0.02562 * 11 9 8 40 40 H 1.09002 * 110.36476 * 86.04181 * 14 12 11 41 41 H 1.08992 * 110.46051 * 323.76706 * 14 12 11 42 42 H 0.96999 * 119.99355 * 179.97438 * 19 18 16 43 43 H 1.08999 * 109.88022 * 118.12904 * 24 15 14 44 44 H 1.08996 * 109.87722 * 239.29473 * 24 15 14 45 45 H 0.96697 * 114.00522 * 293.79046 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6351 2.1265 1.3074 6 6 3.5418 1.4444 -0.1237 7 6 4.4758 1.3088 0.9274 8 6 5.6890 1.3767 0.2982 9 6 7.0202 1.2902 0.9278 10 8 7.1154 1.1480 2.1316 11 7 8.1310 1.3688 0.1686 12 6 9.4531 1.2823 0.7938 13 1 9.4496 0.5628 1.6124 14 6 9.9297 2.6740 1.2796 15 7 11.4009 2.5828 1.3010 16 6 12.2370 3.3491 2.0684 17 1 11.8268 4.0214 2.8074 18 6 13.6116 3.2616 1.8965 19 7 14.1069 2.5552 0.9025 20 14 14.7585 4.1465 3.0761 21 1 15.1279 5.4684 2.5091 22 1 15.9850 3.3338 3.2771 23 1 14.0742 4.3407 4.3796 24 6 11.8222 1.5372 0.3570 25 6 10.5421 0.9282 -0.2531 26 1 10.3188 1.3921 -1.2139 27 8 10.6659 -0.4884 -0.3945 28 8 5.4220 1.5315 -1.0123 29 7 4.2317 1.5659 -1.2204 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8899 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 0.5487 2.1252 1.3969 36 1 2.0697 1.5875 2.1492 37 1 1.9988 3.1541 1.3076 38 1 4.2784 1.1831 1.9817 39 1 8.0551 1.4825 -0.7917 40 1 9.5477 2.8778 2.2800 41 1 9.6077 3.4505 0.5859 42 1 15.0675 2.4945 0.7823 43 1 12.4385 1.9739 -0.4289 44 1 12.3826 0.7655 0.8847 45 1 11.3340 -0.7626 -1.0376 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077800017.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:56 Heat of formation + Delta-G solvation = -5.083891 kcal Electronic energy + Delta-G solvation = -27177.035646 eV Core-core repulsion = 23198.587598 eV Total energy + Delta-G solvation = -3978.448048 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -45.19440 -39.79878 -37.92603 -37.48417 -35.14242 -34.31066 -33.43384 -32.31184 -31.53821 -29.87013 -28.51017 -27.19849 -25.69829 -24.88535 -23.64400 -23.23789 -21.37028 -20.65810 -20.42938 -19.88534 -18.43517 -17.90348 -17.13496 -16.88172 -16.30855 -15.90663 -15.39930 -15.15600 -14.86168 -14.64125 -14.19865 -14.12736 -14.05667 -13.80327 -13.23792 -13.12927 -12.74466 -12.56237 -12.55684 -12.24967 -12.14534 -11.85469 -11.64274 -11.59536 -11.38885 -11.29013 -11.06104 -10.97081 -10.83416 -10.39652 -10.28840 -10.18081 -9.96402 -9.88113 -9.84119 -9.42697 -9.02882 -8.68556 -6.93957 -5.78890 -3.15269 0.67630 1.82869 2.48964 2.97164 3.15397 3.37731 3.43616 3.46033 3.67060 4.19281 4.40176 4.48121 4.55864 4.61236 4.68543 4.82585 4.87798 5.04511 5.08258 5.11788 5.14579 5.28404 5.39067 5.47348 5.51101 5.53923 5.57602 5.59273 5.61792 5.73036 5.74542 5.88253 5.92185 5.98664 6.03583 6.34212 6.54393 6.74937 7.26126 7.34291 7.45274 7.69267 7.87378 8.02765 8.05035 8.15155 9.11063 9.71828 10.34408 11.31688 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.027651 B = 0.002347 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.387405 B =11929.403311 C =12508.321592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C -0.012 4.012 4 H 0.090 0.910 5 C -0.148 4.148 6 C 0.018 3.982 7 C -0.151 4.151 8 C -0.074 4.074 9 C 0.603 3.397 10 O -0.508 6.508 11 N -0.697 5.697 12 C 0.137 3.863 13 H 0.107 0.893 14 C 0.129 3.871 15 N -0.598 5.598 16 C -0.229 4.229 17 H 0.081 0.919 18 C -0.007 4.007 19 N -0.922 5.922 20 Si 0.915 3.085 21 H -0.289 1.289 22 H -0.289 1.289 23 H -0.280 1.280 24 C 0.149 3.851 25 C 0.070 3.930 26 H 0.062 0.938 27 O -0.564 6.564 28 O 0.116 5.884 29 N -0.346 5.346 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.182 0.818 39 H 0.405 0.595 40 H 0.053 0.947 41 H 0.026 0.974 42 H 0.253 0.747 43 H 0.068 0.932 44 H 0.046 0.954 45 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.288 -4.553 -4.854 24.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.032 4.032 4 H 0.108 0.892 5 C -0.206 4.206 6 C -0.140 4.140 7 C -0.174 4.174 8 C -0.140 4.140 9 C 0.385 3.615 10 O -0.384 6.384 11 N -0.347 5.347 12 C 0.033 3.967 13 H 0.125 0.875 14 C 0.002 3.998 15 N -0.326 5.326 16 C -0.357 4.357 17 H 0.099 0.901 18 C -0.204 4.204 19 N -0.569 5.569 20 Si 0.745 3.255 21 H -0.216 1.216 22 H -0.216 1.216 23 H -0.205 1.205 24 C 0.023 3.977 25 C 0.010 3.990 26 H 0.079 0.921 27 O -0.369 6.369 28 O 0.043 5.957 29 N -0.047 5.047 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.199 0.801 39 H 0.240 0.760 40 H 0.071 0.929 41 H 0.044 0.956 42 H 0.064 0.936 43 H 0.086 0.914 44 H 0.064 0.936 45 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -23.754 -4.471 -4.779 24.639 hybrid contribution 1.152 0.436 0.375 1.287 sum -22.603 -4.035 -4.405 23.379 Atomic orbital electron populations 1.21817 0.94980 1.02035 1.02142 1.21572 0.96330 0.94758 1.02829 1.19608 0.85311 0.97926 1.00321 0.89213 1.21909 1.02025 1.00761 0.95917 1.23605 0.98837 1.03164 0.88416 1.22790 0.89408 1.03030 1.02136 1.24367 0.97415 1.07961 0.84261 1.16510 0.81024 0.77798 0.86130 1.90898 1.85268 1.49368 1.12827 1.45848 1.05638 1.72064 1.11135 1.22390 0.78556 0.99737 0.96054 0.87479 1.21851 0.86393 0.92362 0.99229 1.44239 0.99054 1.41050 1.48232 1.19079 0.87081 1.17260 1.12275 0.90128 1.24826 0.96736 1.00326 0.98490 1.69907 1.11574 1.44808 1.30634 0.86055 0.80412 0.78697 0.80341 1.21574 1.21568 1.20497 1.21888 0.90638 0.91282 0.93887 1.23440 0.97268 0.81350 0.96930 0.92059 1.86451 1.62486 1.21748 1.66195 1.84976 1.19447 1.66429 1.24826 1.73721 0.89284 1.17481 1.24168 0.92572 0.92396 0.92135 0.91678 0.91271 0.91180 0.91806 0.92092 0.80074 0.76013 0.92860 0.95648 0.93631 0.91437 0.93559 0.77445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.67 37.16 0.36 -0.44 16 2 C -0.12 -0.80 5.38 -26.73 -0.14 -0.94 16 3 C -0.01 -0.10 2.85 -91.77 -0.26 -0.36 16 4 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 5 C -0.15 -0.93 8.57 37.16 0.32 -0.61 16 6 C 0.02 0.19 6.20 -82.16 -0.51 -0.32 16 7 C -0.15 -1.70 10.13 -38.94 -0.39 -2.09 16 8 C -0.07 -0.95 7.29 -36.31 -0.26 -1.21 16 9 C 0.60 9.15 7.82 -12.48 -0.10 9.05 16 10 O -0.51 -9.30 16.66 5.29 0.09 -9.21 16 11 N -0.70 -10.22 5.23 -52.78 -0.28 -10.49 16 12 C 0.14 2.48 3.04 -65.78 -0.20 2.28 16 13 H 0.11 2.17 7.73 -51.93 -0.40 1.77 16 14 C 0.13 2.69 6.93 -2.53 -0.02 2.67 16 15 N -0.60 -15.01 3.39 -170.07 -0.58 -15.59 16 16 C -0.23 -6.31 10.26 -15.06 -0.15 -6.47 16 17 H 0.08 2.16 7.84 -52.49 -0.41 1.75 16 18 C -0.01 -0.21 5.45 -17.43 -0.09 -0.30 16 19 N -0.92 -26.33 10.48 55.49 0.58 -25.75 16 20 Si 0.91 21.88 29.56 -169.99 -5.02 16.86 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 C 0.15 3.43 5.21 -3.06 -0.02 3.41 16 25 C 0.07 1.24 3.94 -24.89 -0.10 1.15 16 26 H 0.06 0.96 8.00 -51.93 -0.42 0.54 16 27 O -0.56 -9.28 13.40 -35.23 -0.47 -9.75 16 28 O 0.12 1.44 11.04 15.57 0.17 1.61 16 29 N -0.35 -4.29 12.04 33.52 0.40 -3.89 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.27 6.56 -51.93 -0.34 -0.07 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.33 6.56 -51.93 -0.34 -0.01 16 36 H 0.06 0.38 7.49 -51.93 -0.39 -0.01 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.18 1.75 7.66 -52.49 -0.40 1.34 16 39 H 0.40 4.89 8.34 -40.82 -0.34 4.55 16 40 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 41 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 43 H 0.07 1.70 6.99 -51.93 -0.36 1.33 16 44 H 0.05 1.19 7.83 -51.93 -0.41 0.78 16 45 H 0.38 4.67 9.12 45.56 0.42 5.08 16 LS Contribution 373.44 15.07 5.63 5.63 Total: -1.00 -32.32 373.44 -6.97 -39.28 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -5.91 Total: 5.47 kcal Atomic # 6 Polarization: 7.40 SS G_CDS: -1.58 Total: 5.82 kcal Atomic # 7 Polarization: -55.85 SS G_CDS: 0.13 Total: -55.72 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: -0.21 Total: -17.35 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.32 -6.97 -39.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077800017.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.200 kcal (2) G-P(sol) polarization free energy of solvation -32.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds