Wall clock time and date at job start Tue Mar 31 2020 13:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46814 * 2 1 4 4 H 1.08993 * 109.46893 * 304.99633 * 3 2 1 5 5 C 1.53004 * 109.46855 * 64.99849 * 3 2 1 6 6 C 1.50693 * 109.47087 * 184.99491 * 3 2 1 7 7 C 1.41265 * 126.70685 * 275.26800 * 6 3 2 8 8 C 1.36832 * 103.84426 * 180.09480 * 7 6 3 9 9 C 1.47511 * 126.94070 * 179.97438 * 8 7 6 10 10 O 1.21588 * 120.00362 * 359.71470 * 9 8 7 11 11 N 1.34775 * 119.99949 * 179.70969 * 9 8 7 12 12 C 1.46504 * 120.00113 * 180.02562 * 11 9 8 13 13 H 1.08995 * 110.88565 * 37.43055 * 12 11 9 14 14 C 1.54912 * 111.00388 * 273.54607 * 12 11 9 15 15 N 1.47419 * 104.82985 * 204.87628 * 14 12 11 16 16 C 1.36942 * 125.64839 * 204.08990 * 15 14 12 17 17 H 1.07992 * 119.99706 * 6.65716 * 16 15 14 18 18 C 1.38812 * 119.99928 * 186.65061 * 16 15 14 19 19 N 1.31619 * 119.99814 * 7.38075 * 18 16 15 20 20 Si 1.86804 * 119.99683 * 187.38332 * 18 16 15 21 21 H 1.48500 * 109.46845 * 265.01760 * 20 18 16 22 22 H 1.48500 * 109.46905 * 145.01852 * 20 18 16 23 23 H 1.48502 * 109.47029 * 25.01940 * 20 18 16 24 24 C 1.47026 * 108.70506 * 24.36095 * 15 14 12 25 25 C 1.54336 * 107.26214 * 358.57986 * 24 15 14 26 26 H 1.09004 * 110.51446 * 96.45669 * 25 24 15 27 27 O 1.42898 * 111.00273 * 219.59851 * 25 24 15 28 28 O 1.34636 * 106.11091 * 359.66844 * 8 7 6 29 29 N 1.20882 * 111.47373 * 0.21870 * 28 8 7 30 30 H 1.09000 * 109.46953 * 60.00488 * 1 2 3 31 31 H 1.09005 * 109.46997 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47721 * 299.99689 * 1 2 3 33 33 H 1.08990 * 109.47262 * 239.99721 * 2 1 3 34 34 H 1.09000 * 109.46953 * 119.99512 * 2 1 3 35 35 H 1.09002 * 109.46989 * 299.99839 * 5 3 2 36 36 H 1.09001 * 109.47365 * 59.99904 * 5 3 2 37 37 H 1.09001 * 109.46734 * 179.97438 * 5 3 2 38 38 H 1.07994 * 128.07972 * 359.97438 * 7 6 3 39 39 H 0.97002 * 120.00107 * 0.02562 * 11 9 8 40 40 H 1.09002 * 110.36476 * 86.04181 * 14 12 11 41 41 H 1.08992 * 110.46051 * 323.76706 * 14 12 11 42 42 H 0.96999 * 119.99355 * 179.97438 * 19 18 16 43 43 H 1.08999 * 109.88022 * 118.12904 * 24 15 14 44 44 H 1.08996 * 109.87722 * 239.29473 * 24 15 14 45 45 H 0.96697 * 114.00522 * 293.79046 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6351 2.1265 1.3074 6 6 3.5418 1.4444 -0.1237 7 6 4.4758 1.3088 0.9274 8 6 5.6890 1.3767 0.2982 9 6 7.0202 1.2902 0.9278 10 8 7.1154 1.1480 2.1316 11 7 8.1310 1.3688 0.1686 12 6 9.4531 1.2823 0.7938 13 1 9.4496 0.5628 1.6124 14 6 9.9297 2.6740 1.2796 15 7 11.4009 2.5828 1.3010 16 6 12.2370 3.3491 2.0684 17 1 11.8268 4.0214 2.8074 18 6 13.6116 3.2616 1.8965 19 7 14.1069 2.5552 0.9025 20 14 14.7585 4.1465 3.0761 21 1 15.1279 5.4684 2.5091 22 1 15.9850 3.3338 3.2771 23 1 14.0742 4.3407 4.3796 24 6 11.8222 1.5372 0.3570 25 6 10.5421 0.9282 -0.2531 26 1 10.3188 1.3921 -1.2139 27 8 10.6659 -0.4884 -0.3945 28 8 5.4220 1.5315 -1.0123 29 7 4.2317 1.5659 -1.2204 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8899 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 0.5487 2.1252 1.3969 36 1 2.0697 1.5875 2.1492 37 1 1.9988 3.1541 1.3076 38 1 4.2784 1.1831 1.9817 39 1 8.0551 1.4825 -0.7917 40 1 9.5477 2.8778 2.2800 41 1 9.6077 3.4505 0.5859 42 1 15.0675 2.4945 0.7823 43 1 12.4385 1.9739 -0.4289 44 1 12.3826 0.7655 0.8847 45 1 11.3340 -0.7626 -1.0376 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077800017.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:55 Heat of formation + Delta-G solvation = -28.990917 kcal Electronic energy + Delta-G solvation = -27178.072333 eV Core-core repulsion = 23198.587598 eV Total energy + Delta-G solvation = -3979.484734 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -46.12150 -41.14922 -39.45438 -38.12520 -36.68780 -35.78214 -34.24859 -33.82683 -32.93913 -30.38617 -30.25260 -28.86996 -26.63240 -26.28013 -24.94686 -24.05647 -22.49156 -22.12854 -21.87147 -20.93334 -19.50377 -18.93841 -18.84888 -18.32678 -17.45304 -17.30102 -16.66934 -16.15385 -16.01869 -15.91469 -15.72234 -15.34620 -14.93089 -14.72465 -14.53684 -14.47284 -14.26481 -13.80468 -13.67098 -13.28496 -13.11100 -13.01538 -12.91008 -12.80599 -12.73306 -12.51429 -12.18808 -12.11514 -11.96025 -11.89407 -11.67872 -11.57331 -11.50410 -11.08331 -10.98630 -10.87324 -10.76357 -10.35411 -8.96483 -7.88445 -5.27360 -0.34614 0.95504 1.38282 1.46792 1.48182 1.57730 1.80307 2.01784 2.47614 2.89886 3.09599 3.29062 3.33188 3.49842 3.75150 3.86517 3.87548 3.97855 4.01777 4.05688 4.13480 4.17877 4.41980 4.45658 4.51269 4.56173 4.61995 4.74656 4.81521 4.84045 4.87359 5.02797 5.08611 5.13693 5.18610 5.25617 5.35981 5.38797 5.46260 5.49264 5.64308 6.13413 6.17519 6.80594 6.85629 6.97842 7.04050 7.68597 8.30853 9.19933 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.027651 B = 0.002347 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.387405 B =11929.403311 C =12508.321592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.114 4.114 3 C -0.012 4.012 4 H 0.092 0.908 5 C -0.147 4.147 6 C 0.025 3.975 7 C -0.141 4.141 8 C -0.086 4.086 9 C 0.609 3.391 10 O -0.543 6.543 11 N -0.685 5.685 12 C 0.153 3.847 13 H 0.085 0.915 14 C 0.129 3.871 15 N -0.620 5.620 16 C -0.247 4.247 17 H 0.081 0.919 18 C -0.061 4.061 19 N -0.945 5.945 20 Si 0.979 3.021 21 H -0.283 1.283 22 H -0.292 1.292 23 H -0.272 1.272 24 C 0.156 3.844 25 C 0.092 3.908 26 H 0.095 0.905 27 O -0.567 6.567 28 O 0.112 5.888 29 N -0.361 5.361 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.052 0.948 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.066 0.934 37 H 0.055 0.945 38 H 0.197 0.803 39 H 0.420 0.580 40 H 0.041 0.959 41 H 0.040 0.960 42 H 0.250 0.750 43 H 0.043 0.957 44 H 0.010 0.990 45 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.432 -4.454 -5.132 26.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.153 4.153 3 C -0.032 4.032 4 H 0.111 0.889 5 C -0.205 4.205 6 C -0.133 4.133 7 C -0.163 4.163 8 C -0.152 4.152 9 C 0.393 3.607 10 O -0.420 6.420 11 N -0.336 5.336 12 C 0.047 3.953 13 H 0.103 0.897 14 C 0.003 3.997 15 N -0.348 5.348 16 C -0.375 4.375 17 H 0.099 0.901 18 C -0.255 4.255 19 N -0.594 5.594 20 Si 0.807 3.193 21 H -0.210 1.210 22 H -0.219 1.219 23 H -0.197 1.197 24 C 0.030 3.970 25 C 0.032 3.968 26 H 0.113 0.887 27 O -0.375 6.375 28 O 0.041 5.959 29 N -0.063 5.063 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.107 0.893 36 H 0.085 0.915 37 H 0.074 0.926 38 H 0.214 0.786 39 H 0.258 0.742 40 H 0.060 0.940 41 H 0.057 0.943 42 H 0.059 0.941 43 H 0.061 0.939 44 H 0.028 0.972 45 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -25.923 -4.378 -5.100 26.780 hybrid contribution 1.731 0.385 0.448 1.829 sum -24.191 -3.992 -4.653 24.956 Atomic orbital electron populations 1.21804 0.93564 1.02536 1.02788 1.21555 0.97522 0.93903 1.02283 1.19779 0.83291 0.98759 1.01346 0.88942 1.21926 1.03293 1.00225 0.95012 1.24078 1.00129 1.01590 0.87542 1.23084 0.88884 1.01318 1.02990 1.23940 0.96553 1.09839 0.84869 1.16658 0.81681 0.76691 0.85670 1.90883 1.85938 1.50863 1.14358 1.45597 1.04279 1.71910 1.11849 1.21886 0.80269 0.97340 0.95758 0.89726 1.21934 0.84267 0.94431 0.99104 1.44497 1.00751 1.41152 1.48357 1.19413 0.87943 1.17508 1.12680 0.90130 1.25643 0.98149 1.01507 1.00153 1.70096 1.11412 1.45964 1.31895 0.85062 0.78108 0.77516 0.78625 1.21010 1.21858 1.19666 1.21704 0.92842 0.89934 0.92520 1.23117 0.93996 0.82024 0.97657 0.88731 1.86419 1.63271 1.20590 1.67246 1.84970 1.19633 1.66890 1.24408 1.73716 0.89362 1.18212 1.24969 0.92341 0.92020 0.91074 0.92900 0.91180 0.89333 0.91484 0.92585 0.78575 0.74171 0.94017 0.94250 0.94092 0.93864 0.97208 0.75160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.67 71.98 0.70 -0.51 16 2 C -0.11 -1.34 5.38 30.60 0.16 -1.17 16 3 C -0.01 -0.17 2.85 -11.54 -0.03 -0.20 16 4 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 5 C -0.15 -1.46 8.57 71.98 0.62 -0.85 16 6 C 0.02 0.48 6.20 43.55 0.27 0.75 16 7 C -0.14 -2.92 10.13 22.68 0.23 -2.69 16 8 C -0.09 -2.10 7.29 24.39 0.18 -1.92 16 9 C 0.61 17.93 7.82 86.69 0.68 18.61 16 10 O -0.54 -19.73 16.66 -3.99 -0.07 -19.79 16 11 N -0.69 -19.21 5.23 -439.15 -2.30 -21.50 16 12 C 0.15 5.47 3.04 46.38 0.14 5.61 16 13 H 0.08 3.46 7.73 -2.39 -0.02 3.44 16 14 C 0.13 5.39 6.93 86.86 0.60 6.00 16 15 N -0.62 -31.68 3.39 -691.98 -2.35 -34.03 16 16 C -0.25 -13.85 10.26 84.03 0.86 -12.98 16 17 H 0.08 4.38 7.84 -2.91 -0.02 4.36 16 18 C -0.06 -3.43 5.45 84.86 0.46 -2.97 16 19 N -0.95 -55.27 10.48 21.65 0.23 -55.04 16 20 Si 0.98 45.49 29.56 68.60 2.03 47.52 16 21 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 22 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 23 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 24 C 0.16 7.33 5.21 86.73 0.45 7.78 16 25 C 0.09 3.18 3.94 31.79 0.13 3.31 16 26 H 0.10 2.70 8.00 -2.39 -0.02 2.68 16 27 O -0.57 -17.87 13.40 -148.98 -2.00 -19.87 16 28 O 0.11 2.65 11.04 65.89 0.73 3.37 16 29 N -0.36 -8.42 12.04 -48.86 -0.59 -9.01 16 30 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.06 0.47 8.14 -2.38 -0.02 0.45 16 32 H 0.07 0.43 6.56 -2.39 -0.02 0.42 16 33 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.09 0.57 6.56 -2.39 -0.02 0.55 16 36 H 0.07 0.63 7.49 -2.39 -0.02 0.62 16 37 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.20 3.39 7.66 -2.91 -0.02 3.37 16 39 H 0.42 9.26 8.34 -92.71 -0.77 8.49 16 40 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 43 H 0.04 2.23 6.99 -2.39 -0.02 2.21 16 44 H 0.01 0.52 7.83 -2.39 -0.02 0.50 16 45 H 0.40 9.14 9.12 -74.06 -0.68 8.47 16 Total: -1.00 -70.75 373.44 0.71 -70.04 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: -0.42 Total: 19.53 kcal Atomic # 6 Polarization: 13.32 SS G_CDS: 5.44 Total: 18.77 kcal Atomic # 7 Polarization: -114.57 SS G_CDS: -5.01 Total: -119.58 kcal Atomic # 8 Polarization: -34.95 SS G_CDS: -1.34 Total: -36.29 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -70.75 0.71 -70.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077800017.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.053 kcal (2) G-P(sol) polarization free energy of solvation -70.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds