Wall clock time and date at job start Tue Mar 31 2020 13:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.46854 * 2 1 4 4 H 1.08995 * 109.47201 * 304.99995 * 3 2 1 5 5 C 1.52994 * 109.47038 * 65.00119 * 3 2 1 6 6 C 1.50703 * 109.47004 * 185.00051 * 3 2 1 7 7 C 1.41264 * 126.70197 * 275.27654 * 6 3 2 8 8 C 1.36826 * 103.84276 * 180.08355 * 7 6 3 9 9 C 1.47512 * 126.94169 * 179.97438 * 8 7 6 10 10 O 1.21583 * 120.00067 * 359.71483 * 9 8 7 11 11 N 1.34777 * 119.99606 * 179.97438 * 9 8 7 12 12 C 1.46505 * 119.99724 * 179.72699 * 11 9 8 13 13 H 1.08996 * 110.88847 * 31.12172 * 12 11 9 14 14 C 1.54912 * 111.00371 * 267.19794 * 12 11 9 15 15 N 1.47426 * 104.83382 * 204.91605 * 14 12 11 16 16 C 1.36930 * 125.64844 * 204.08010 * 15 14 12 17 17 H 1.07998 * 120.00269 * 0.03607 * 16 15 14 18 18 C 1.38815 * 119.99663 * 180.02562 * 16 15 14 19 19 N 1.31619 * 120.00168 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99909 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47217 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47026 * 120.00493 * 20 18 16 23 23 H 1.48503 * 109.47245 * 240.00818 * 20 18 16 24 24 C 1.47021 * 108.70152 * 24.12955 * 15 14 12 25 25 C 1.54330 * 107.26978 * 358.93916 * 24 15 14 26 26 H 1.09004 * 110.86915 * 219.37142 * 25 24 15 27 27 O 1.42904 * 110.71870 * 96.17248 * 25 24 15 28 28 O 1.34640 * 106.11404 * 359.67291 * 8 7 6 29 29 N 1.20891 * 111.46789 * 0.21844 * 28 8 7 30 30 H 1.09001 * 109.47217 * 299.99392 * 1 2 3 31 31 H 1.08995 * 109.47209 * 60.00136 * 1 2 3 32 32 H 1.09004 * 109.46917 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47217 * 240.00608 * 2 1 3 34 34 H 1.08998 * 109.47718 * 119.99884 * 2 1 3 35 35 H 1.09001 * 109.47333 * 180.02562 * 5 3 2 36 36 H 1.09000 * 109.47443 * 300.00056 * 5 3 2 37 37 H 1.09004 * 109.47493 * 59.99866 * 5 3 2 38 38 H 1.07999 * 128.08197 * 359.97438 * 7 6 3 39 39 H 0.97000 * 120.00483 * 359.73132 * 11 9 8 40 40 H 1.08998 * 110.36746 * 323.75537 * 14 12 11 41 41 H 1.08999 * 110.36527 * 86.07517 * 14 12 11 42 42 H 0.97001 * 119.99886 * 179.97438 * 19 18 16 43 43 H 1.09002 * 109.88257 * 239.52605 * 24 15 14 44 44 H 1.09000 * 110.01238 * 118.42548 * 24 15 14 45 45 H 0.96703 * 113.99737 * 66.47302 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 1.6352 2.1266 1.3073 6 6 3.5419 1.4444 -0.1238 7 6 4.4758 1.3086 0.9272 8 6 5.6889 1.3763 0.2980 9 6 7.0202 1.2895 0.9275 10 8 7.1154 1.1472 2.1312 11 7 8.1310 1.3733 0.1688 12 6 9.4532 1.2931 0.7946 13 1 9.4260 0.6591 1.6808 14 6 9.9919 2.7046 1.1372 15 7 11.4582 2.5534 1.1612 16 6 12.3321 3.3561 1.8446 17 1 11.9601 4.1835 2.4305 18 6 13.6962 3.1061 1.7843 19 7 14.1496 2.0979 1.0700 20 14 14.8884 4.2006 2.7171 21 1 14.1315 5.2551 3.4386 22 1 15.6505 3.3824 3.6944 23 1 15.8310 4.8342 1.7603 24 6 11.8268 1.3988 0.3290 25 6 10.5174 0.7905 -0.2163 26 1 10.5656 -0.2985 -0.2161 27 8 10.2398 1.2822 -1.5290 28 8 5.4220 1.5313 -1.0125 29 7 4.2317 1.5660 -1.2205 30 1 -0.3634 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.9980 3.1544 1.3072 36 1 0.5489 2.1252 1.3970 37 1 2.0698 1.5875 2.1492 38 1 4.2785 1.1827 1.9816 39 1 8.0551 1.4867 -0.7916 40 1 9.6968 3.4199 0.3694 41 1 9.6273 3.0231 2.1137 42 1 15.1029 1.9234 1.0276 43 1 12.3553 0.6607 0.9323 44 1 12.4582 1.7219 -0.4986 45 1 10.8762 0.9966 -2.1988 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083843001.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:59 Heat of formation + Delta-G solvation = -4.206493 kcal Electronic energy + Delta-G solvation = -27272.795729 eV Core-core repulsion = 23294.385728 eV Total energy + Delta-G solvation = -3978.410001 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -45.15875 -39.77406 -37.97360 -37.46709 -34.88333 -34.22978 -33.40210 -32.27082 -31.49170 -29.85785 -28.57770 -27.22488 -25.68039 -24.86520 -23.64842 -23.21596 -21.34324 -20.56640 -20.27269 -19.83205 -18.41858 -17.86520 -17.26627 -16.86793 -16.31096 -15.59339 -15.37280 -15.09714 -14.79525 -14.70521 -14.20702 -14.09031 -14.01308 -13.77582 -13.21874 -13.12744 -12.77881 -12.67403 -12.55002 -12.29855 -12.23282 -11.82573 -11.59426 -11.37823 -11.34477 -11.05024 -11.01599 -10.88612 -10.59223 -10.55917 -10.30256 -10.26469 -10.06230 -9.85864 -9.85339 -9.35572 -8.87126 -8.68847 -6.91044 -5.77711 -3.10895 0.70659 1.85481 2.53280 2.99298 3.20770 3.38393 3.44434 3.46695 3.69473 4.20856 4.45656 4.49270 4.52142 4.65523 4.70526 4.88304 4.90622 5.05562 5.12806 5.15974 5.22888 5.28737 5.32674 5.48356 5.50767 5.54683 5.58794 5.62675 5.64550 5.75055 5.80485 5.89264 5.93056 5.97545 6.14471 6.40678 6.58218 6.82775 7.29282 7.40818 7.48270 7.71480 7.92128 8.01084 8.13684 8.17308 9.14944 9.74875 10.38693 11.34608 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.030414 B = 0.002337 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.405563 B =11978.582070 C =12480.473385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C -0.012 4.012 4 H 0.089 0.911 5 C -0.148 4.148 6 C 0.017 3.983 7 C -0.153 4.153 8 C -0.073 4.073 9 C 0.599 3.401 10 O -0.515 6.515 11 N -0.689 5.689 12 C 0.136 3.864 13 H 0.110 0.890 14 C 0.131 3.869 15 N -0.600 5.600 16 C -0.224 4.224 17 H 0.081 0.919 18 C -0.010 4.010 19 N -0.926 5.926 20 Si 0.915 3.085 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.290 1.290 24 C 0.154 3.846 25 C 0.068 3.932 26 H 0.063 0.937 27 O -0.567 6.567 28 O 0.118 5.882 29 N -0.346 5.346 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.182 0.818 39 H 0.414 0.586 40 H 0.028 0.972 41 H 0.046 0.954 42 H 0.252 0.748 43 H 0.057 0.943 44 H 0.055 0.945 45 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.316 -5.341 -4.185 24.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.032 4.032 4 H 0.108 0.892 5 C -0.206 4.206 6 C -0.141 4.141 7 C -0.175 4.175 8 C -0.139 4.139 9 C 0.381 3.619 10 O -0.391 6.391 11 N -0.339 5.339 12 C 0.031 3.969 13 H 0.128 0.872 14 C 0.003 3.997 15 N -0.327 5.327 16 C -0.352 4.352 17 H 0.098 0.902 18 C -0.206 4.206 19 N -0.574 5.574 20 Si 0.746 3.254 21 H -0.204 1.204 22 H -0.217 1.217 23 H -0.217 1.217 24 C 0.029 3.971 25 C 0.008 3.992 26 H 0.081 0.919 27 O -0.374 6.374 28 O 0.045 5.955 29 N -0.047 5.047 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.199 0.801 39 H 0.251 0.749 40 H 0.046 0.954 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.075 0.925 44 H 0.073 0.927 45 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -23.810 -4.989 -4.256 24.696 hybrid contribution 1.258 0.248 0.466 1.364 sum -22.552 -4.741 -3.790 23.354 Atomic orbital electron populations 1.21817 0.94997 1.02018 1.02146 1.21571 0.96312 0.94781 1.02804 1.19604 0.85346 0.97900 1.00302 0.89225 1.21906 1.02001 1.00766 0.95927 1.23600 0.98815 1.03254 0.88452 1.22779 0.89416 1.03233 1.02092 1.24367 0.97414 1.07833 0.84278 1.16585 0.81193 0.77984 0.86120 1.90884 1.85340 1.50052 1.12835 1.45707 1.05087 1.71208 1.11932 1.22524 0.78794 1.00067 0.95550 0.87191 1.21842 0.86001 0.92974 0.98856 1.44274 0.99419 1.32835 1.56162 1.19135 0.86840 1.07155 1.22084 0.90150 1.24804 0.96771 0.98637 1.00344 1.69917 1.12856 1.30435 1.44194 0.85989 0.80995 0.79516 0.78941 1.20434 1.21708 1.21748 1.21875 0.90116 0.89895 0.95263 1.23525 0.96684 0.96429 0.82561 0.91887 1.86250 1.55441 1.77536 1.18144 1.85000 1.19369 1.66318 1.24809 1.73727 0.89321 1.17417 1.24185 0.92141 0.92567 0.92410 0.91684 0.91290 0.92096 0.91205 0.91818 0.80114 0.74887 0.95381 0.93552 0.93730 0.92528 0.92744 0.77076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.67 37.16 0.36 -0.45 16 2 C -0.12 -0.80 5.38 -26.73 -0.14 -0.95 16 3 C -0.01 -0.10 2.85 -91.77 -0.26 -0.36 16 4 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 5 C -0.15 -0.94 8.57 37.15 0.32 -0.62 16 6 C 0.02 0.18 6.20 -82.16 -0.51 -0.33 16 7 C -0.15 -1.74 10.13 -38.94 -0.39 -2.13 16 8 C -0.07 -0.96 7.29 -36.31 -0.26 -1.22 16 9 C 0.60 9.17 7.82 -12.48 -0.10 9.07 16 10 O -0.51 -9.31 16.55 5.29 0.09 -9.23 16 11 N -0.69 -10.48 5.16 -52.78 -0.27 -10.75 16 12 C 0.14 2.43 3.31 -65.78 -0.22 2.21 16 13 H 0.11 2.04 7.54 -51.93 -0.39 1.65 16 14 C 0.13 2.79 6.92 -2.53 -0.02 2.77 16 15 N -0.60 -15.15 3.39 -170.07 -0.58 -15.72 16 16 C -0.22 -6.22 10.28 -15.06 -0.15 -6.37 16 17 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 18 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 19 N -0.93 -26.48 10.31 55.49 0.57 -25.91 16 20 Si 0.92 22.00 29.55 -169.99 -5.02 16.98 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 C 0.15 3.52 5.14 -3.06 -0.02 3.50 16 25 C 0.07 1.18 4.20 -24.90 -0.10 1.08 16 26 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 27 O -0.57 -8.81 12.14 -35.23 -0.43 -9.24 16 28 O 0.12 1.53 11.04 15.55 0.17 1.71 16 29 N -0.35 -4.42 12.04 33.52 0.40 -4.02 16 30 H 0.06 0.28 6.57 -51.93 -0.34 -0.07 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.34 6.57 -51.93 -0.34 0.00 16 37 H 0.06 0.39 7.49 -51.93 -0.39 0.00 16 38 H 0.18 1.75 7.66 -52.49 -0.40 1.35 16 39 H 0.41 5.79 7.41 -40.82 -0.30 5.48 16 40 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 43 H 0.06 1.42 7.38 -51.93 -0.38 1.04 16 44 H 0.05 1.36 7.43 -51.93 -0.39 0.98 16 45 H 0.38 4.55 9.12 45.56 0.42 4.97 16 LS Contribution 371.35 15.07 5.60 5.60 Total: -1.00 -31.89 371.35 -6.94 -38.83 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -5.87 Total: 5.92 kcal Atomic # 6 Polarization: 7.45 SS G_CDS: -1.60 Total: 5.85 kcal Atomic # 7 Polarization: -56.53 SS G_CDS: 0.13 Total: -56.40 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -0.17 Total: -16.76 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.89 -6.94 -38.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083843001.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.621 kcal (2) G-P(sol) polarization free energy of solvation -31.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds