Wall clock time and date at job start Tue Mar 31 2020 13:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 H 1.09006 * 109.47396 * 55.00290 * 3 2 1 5 5 C 1.52996 * 109.47276 * 294.99872 * 3 2 1 6 6 C 1.50697 * 109.47173 * 174.99519 * 3 2 1 7 7 C 1.41268 * 126.70044 * 84.71127 * 6 3 2 8 8 C 1.36830 * 103.84562 * 179.86064 * 7 6 3 9 9 C 1.47511 * 126.94474 * 180.12881 * 8 7 6 10 10 O 1.21579 * 120.00071 * 0.30214 * 9 8 7 11 11 N 1.34775 * 120.00116 * 180.29882 * 9 8 7 12 12 C 1.46493 * 120.00324 * 180.02562 * 11 9 8 13 13 H 1.08999 * 110.88628 * 31.11877 * 12 11 9 14 14 C 1.54909 * 111.00291 * 267.19779 * 12 11 9 15 15 N 1.47432 * 104.82979 * 204.91129 * 14 12 11 16 16 C 1.36937 * 125.64631 * 204.08095 * 15 14 12 17 17 H 1.08003 * 120.00273 * 0.03036 * 16 15 14 18 18 C 1.38812 * 119.99808 * 180.02562 * 16 15 14 19 19 N 1.31619 * 119.99830 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99916 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46939 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47146 * 119.99828 * 20 18 16 23 23 H 1.48504 * 109.46854 * 239.99612 * 20 18 16 24 24 C 1.47013 * 108.70222 * 24.13196 * 15 14 12 25 25 C 1.54330 * 107.27436 * 358.93444 * 24 15 14 26 26 H 1.08994 * 110.87139 * 219.37675 * 25 24 15 27 27 O 1.42898 * 110.71602 * 96.17184 * 25 24 15 28 28 O 1.34646 * 106.11033 * 0.39870 * 8 7 6 29 29 N 1.20889 * 111.46780 * 359.72680 * 28 8 7 30 30 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 31 31 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 33 33 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 34 34 H 1.09000 * 109.47050 * 239.99996 * 2 1 3 35 35 H 1.08998 * 109.47375 * 300.00219 * 5 3 2 36 36 H 1.09000 * 109.46912 * 60.00396 * 5 3 2 37 37 H 1.09004 * 109.47120 * 180.02562 * 5 3 2 38 38 H 1.07999 * 128.07515 * 359.97438 * 7 6 3 39 39 H 0.96998 * 119.99869 * 359.97438 * 11 9 8 40 40 H 1.08998 * 110.36698 * 323.75310 * 14 12 11 41 41 H 1.09001 * 110.36797 * 86.08023 * 14 12 11 42 42 H 0.97006 * 119.99751 * 179.97438 * 19 18 16 43 43 H 1.09006 * 109.88134 * 239.51896 * 24 15 14 44 44 H 1.08999 * 110.01276 * 118.42723 * 24 15 14 45 45 H 0.96702 * 114.00179 * 66.48387 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9816 0.8419 5 6 1.6354 2.1265 -1.3073 6 6 3.5419 1.4443 0.1239 7 6 4.4760 1.3081 -0.9271 8 6 5.6891 1.3772 -0.2980 9 6 7.0204 1.2929 -0.9277 10 8 7.1157 1.1519 -2.1316 11 7 8.1312 1.3722 -0.1686 12 6 9.4533 1.2891 -0.7940 13 1 9.4328 1.7020 -1.8025 14 6 9.9735 -0.1700 -0.8009 15 7 11.4416 -0.0471 -0.8571 16 6 12.3042 -0.9968 -1.3356 17 1 11.9209 -1.9323 -1.7155 18 6 13.6715 -0.7570 -1.3327 19 7 14.1386 0.3834 -0.8704 20 14 14.8483 -2.0522 -1.9862 21 1 14.0770 -3.2354 -2.4450 22 1 15.6191 -1.4913 -3.1248 23 1 15.7843 -2.4598 -0.9078 24 6 11.8260 1.2635 -0.3130 25 6 10.5253 1.9978 0.0753 26 1 10.5873 3.0566 -0.1760 27 8 10.2435 1.8257 1.4656 28 8 5.4221 1.5316 1.0126 29 7 4.2318 1.5658 1.2206 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 2.0699 1.5875 -2.1491 36 1 0.5490 2.1253 -1.3968 37 1 1.9991 3.1541 -1.3075 38 1 4.2786 1.1812 -1.9813 39 1 8.0552 1.4851 0.7918 40 1 9.6704 -0.6852 0.1106 41 1 9.6035 -0.7005 -1.6784 42 1 15.0941 0.5508 -0.8680 43 1 12.3631 1.8358 -1.0694 44 1 12.4545 1.1319 0.5677 45 1 10.8844 2.2500 2.0524 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083843002.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:02 Heat of formation + Delta-G solvation = -4.219980 kcal Electronic energy + Delta-G solvation = -27281.693125 eV Core-core repulsion = 23303.282539 eV Total energy + Delta-G solvation = -3978.410586 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -45.15822 -39.77533 -37.97420 -37.46426 -34.88358 -34.23000 -33.39875 -32.27048 -31.49157 -29.85566 -28.57712 -27.22520 -25.67982 -24.86486 -23.64862 -23.21197 -21.33969 -20.56746 -20.27431 -19.82860 -18.41816 -17.86556 -17.26652 -16.86876 -16.31002 -15.59226 -15.36763 -15.09588 -14.78813 -14.71110 -14.21474 -14.09515 -13.99855 -13.77193 -13.21891 -13.12685 -12.77906 -12.67506 -12.54786 -12.29781 -12.23098 -11.82272 -11.59398 -11.37293 -11.34502 -11.04095 -11.01647 -10.88612 -10.59189 -10.55916 -10.30234 -10.26355 -10.06238 -9.85877 -9.85318 -9.35565 -8.87135 -8.68835 -6.91035 -5.77722 -3.10924 0.70647 1.85467 2.53283 2.99385 3.20710 3.38394 3.44431 3.46713 3.69526 4.20923 4.45712 4.49707 4.52397 4.65942 4.70804 4.88405 4.90949 5.05721 5.13136 5.15959 5.22899 5.29019 5.32818 5.48314 5.50787 5.55686 5.58259 5.63535 5.64572 5.75486 5.80511 5.89792 5.93531 5.97553 6.14503 6.40717 6.58195 6.82753 7.29284 7.40806 7.48263 7.71455 7.92136 8.01118 8.13714 8.17331 9.14937 9.74870 10.38670 11.34590 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.026570 B = 0.002370 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.580461 B =11813.313465 C =12290.234322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C -0.012 4.012 4 H 0.089 0.911 5 C -0.148 4.148 6 C 0.017 3.983 7 C -0.153 4.153 8 C -0.073 4.073 9 C 0.599 3.401 10 O -0.515 6.515 11 N -0.689 5.689 12 C 0.136 3.864 13 H 0.110 0.890 14 C 0.131 3.869 15 N -0.600 5.600 16 C -0.224 4.224 17 H 0.081 0.919 18 C -0.010 4.010 19 N -0.926 5.926 20 Si 0.915 3.085 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.290 1.290 24 C 0.154 3.846 25 C 0.068 3.932 26 H 0.063 0.937 27 O -0.567 6.567 28 O 0.118 5.882 29 N -0.346 5.346 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.182 0.818 39 H 0.414 0.586 40 H 0.028 0.972 41 H 0.046 0.954 42 H 0.252 0.748 43 H 0.057 0.943 44 H 0.054 0.946 45 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.245 5.521 2.916 24.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.031 4.031 4 H 0.108 0.892 5 C -0.206 4.206 6 C -0.141 4.141 7 C -0.175 4.175 8 C -0.139 4.139 9 C 0.381 3.619 10 O -0.391 6.391 11 N -0.339 5.339 12 C 0.031 3.969 13 H 0.128 0.872 14 C 0.003 3.997 15 N -0.327 5.327 16 C -0.352 4.352 17 H 0.098 0.902 18 C -0.205 4.205 19 N -0.574 5.574 20 Si 0.745 3.255 21 H -0.204 1.204 22 H -0.217 1.217 23 H -0.217 1.217 24 C 0.029 3.971 25 C 0.008 3.992 26 H 0.081 0.919 27 O -0.374 6.374 28 O 0.045 5.955 29 N -0.046 5.046 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.199 0.801 39 H 0.251 0.749 40 H 0.046 0.954 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.075 0.925 44 H 0.072 0.928 45 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -23.744 5.207 3.064 24.500 hybrid contribution 1.255 -0.362 -0.394 1.364 sum -22.489 4.845 2.670 23.159 Atomic orbital electron populations 1.21817 0.94997 1.02045 1.02102 1.21577 0.96308 0.94761 1.02888 1.19601 0.85341 0.97933 1.00261 0.89240 1.21904 1.02006 1.00693 0.95966 1.23601 0.98817 1.03262 0.88444 1.22781 0.89416 1.03210 1.02112 1.24369 0.97414 1.07857 0.84256 1.16582 0.81196 0.77965 0.86138 1.90883 1.85328 1.49955 1.12944 1.45703 1.05097 1.71190 1.11941 1.22522 0.78779 0.98918 0.96714 0.87194 1.21843 0.86057 0.92760 0.99016 1.44277 0.99324 1.15894 1.73206 1.19136 0.86935 0.95501 1.33639 0.90156 1.24803 0.96730 0.97629 1.01384 1.69920 1.12411 1.23171 1.51901 0.85990 0.80918 0.80463 0.78080 1.20436 1.21699 1.21745 1.21874 0.90160 0.86048 0.99066 1.23522 0.96620 0.97893 0.81160 0.91883 1.86248 1.54763 1.80080 1.16281 1.85001 1.19366 1.66331 1.24798 1.73725 0.89323 1.17444 1.24156 0.92163 0.92384 0.92584 0.91638 0.91252 0.91813 0.91199 0.92157 0.80114 0.74890 0.95382 0.93550 0.93732 0.92524 0.92751 0.77074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.67 37.16 0.36 -0.47 16 2 C -0.12 -0.83 5.38 -26.73 -0.14 -0.98 16 3 C -0.01 -0.09 2.85 -91.78 -0.26 -0.36 16 4 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 5 C -0.15 -0.92 8.57 37.16 0.32 -0.60 16 6 C 0.02 0.18 6.20 -82.16 -0.51 -0.33 16 7 C -0.15 -1.74 10.13 -38.94 -0.39 -2.13 16 8 C -0.07 -0.96 7.29 -36.31 -0.26 -1.22 16 9 C 0.60 9.17 7.82 -12.48 -0.10 9.08 16 10 O -0.51 -9.32 16.55 5.30 0.09 -9.23 16 11 N -0.69 -10.48 5.16 -52.78 -0.27 -10.75 16 12 C 0.14 2.43 3.30 -65.79 -0.22 2.21 16 13 H 0.11 2.04 7.54 -51.93 -0.39 1.65 16 14 C 0.13 2.79 6.92 -2.53 -0.02 2.77 16 15 N -0.60 -15.15 3.39 -170.07 -0.58 -15.73 16 16 C -0.22 -6.22 10.28 -15.06 -0.15 -6.37 16 17 H 0.08 2.18 7.83 -52.48 -0.41 1.77 16 18 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 19 N -0.93 -26.48 10.31 55.49 0.57 -25.91 16 20 Si 0.91 21.99 29.55 -169.99 -5.02 16.97 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 C 0.15 3.52 5.14 -3.07 -0.02 3.50 16 25 C 0.07 1.18 4.20 -24.90 -0.10 1.08 16 26 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 27 O -0.57 -8.81 12.14 -35.23 -0.43 -9.24 16 28 O 0.12 1.53 11.04 15.54 0.17 1.71 16 29 N -0.35 -4.42 12.04 33.52 0.40 -4.02 16 30 H 0.06 0.28 6.57 -51.93 -0.34 -0.06 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.38 7.49 -51.93 -0.39 -0.01 16 36 H 0.07 0.33 6.56 -51.93 -0.34 -0.01 16 37 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.18 1.76 7.66 -52.49 -0.40 1.35 16 39 H 0.41 5.79 7.41 -40.82 -0.30 5.48 16 40 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 43 H 0.06 1.42 7.38 -51.93 -0.38 1.04 16 44 H 0.05 1.36 7.43 -51.93 -0.39 0.98 16 45 H 0.38 4.55 9.12 45.56 0.42 4.97 16 LS Contribution 371.35 15.07 5.60 5.60 Total: -1.00 -31.89 371.35 -6.94 -38.83 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -5.87 Total: 5.96 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: -1.60 Total: 5.82 kcal Atomic # 7 Polarization: -56.54 SS G_CDS: 0.13 Total: -56.41 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -0.17 Total: -16.76 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.89 -6.94 -38.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083843002.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.609 kcal (2) G-P(sol) polarization free energy of solvation -31.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds