Wall clock time and date at job start Tue Mar 31 2020 13:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 H 1.09006 * 109.47396 * 55.00290 * 3 2 1 5 5 C 1.52996 * 109.47276 * 294.99872 * 3 2 1 6 6 C 1.50697 * 109.47173 * 174.99519 * 3 2 1 7 7 C 1.41268 * 126.70044 * 84.71127 * 6 3 2 8 8 C 1.36830 * 103.84562 * 179.86064 * 7 6 3 9 9 C 1.47511 * 126.94474 * 180.12881 * 8 7 6 10 10 O 1.21579 * 120.00071 * 0.30214 * 9 8 7 11 11 N 1.34775 * 120.00116 * 180.29882 * 9 8 7 12 12 C 1.46493 * 120.00324 * 180.02562 * 11 9 8 13 13 H 1.08999 * 110.88628 * 31.11877 * 12 11 9 14 14 C 1.54909 * 111.00291 * 267.19779 * 12 11 9 15 15 N 1.47432 * 104.82979 * 204.91129 * 14 12 11 16 16 C 1.36937 * 125.64631 * 204.08095 * 15 14 12 17 17 H 1.08003 * 120.00273 * 0.03036 * 16 15 14 18 18 C 1.38812 * 119.99808 * 180.02562 * 16 15 14 19 19 N 1.31619 * 119.99830 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99916 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46939 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47146 * 119.99828 * 20 18 16 23 23 H 1.48504 * 109.46854 * 239.99612 * 20 18 16 24 24 C 1.47013 * 108.70222 * 24.13196 * 15 14 12 25 25 C 1.54330 * 107.27436 * 358.93444 * 24 15 14 26 26 H 1.08994 * 110.87139 * 219.37675 * 25 24 15 27 27 O 1.42898 * 110.71602 * 96.17184 * 25 24 15 28 28 O 1.34646 * 106.11033 * 0.39870 * 8 7 6 29 29 N 1.20889 * 111.46780 * 359.72680 * 28 8 7 30 30 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 31 31 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 33 33 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 34 34 H 1.09000 * 109.47050 * 239.99996 * 2 1 3 35 35 H 1.08998 * 109.47375 * 300.00219 * 5 3 2 36 36 H 1.09000 * 109.46912 * 60.00396 * 5 3 2 37 37 H 1.09004 * 109.47120 * 180.02562 * 5 3 2 38 38 H 1.07999 * 128.07515 * 359.97438 * 7 6 3 39 39 H 0.96998 * 119.99869 * 359.97438 * 11 9 8 40 40 H 1.08998 * 110.36698 * 323.75310 * 14 12 11 41 41 H 1.09001 * 110.36797 * 86.08023 * 14 12 11 42 42 H 0.97006 * 119.99751 * 179.97438 * 19 18 16 43 43 H 1.09006 * 109.88134 * 239.51896 * 24 15 14 44 44 H 1.08999 * 110.01276 * 118.42723 * 24 15 14 45 45 H 0.96702 * 114.00179 * 66.48387 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9816 0.8419 5 6 1.6354 2.1265 -1.3073 6 6 3.5419 1.4443 0.1239 7 6 4.4760 1.3081 -0.9271 8 6 5.6891 1.3772 -0.2980 9 6 7.0204 1.2929 -0.9277 10 8 7.1157 1.1519 -2.1316 11 7 8.1312 1.3722 -0.1686 12 6 9.4533 1.2891 -0.7940 13 1 9.4328 1.7020 -1.8025 14 6 9.9735 -0.1700 -0.8009 15 7 11.4416 -0.0471 -0.8571 16 6 12.3042 -0.9968 -1.3356 17 1 11.9209 -1.9323 -1.7155 18 6 13.6715 -0.7570 -1.3327 19 7 14.1386 0.3834 -0.8704 20 14 14.8483 -2.0522 -1.9862 21 1 14.0770 -3.2354 -2.4450 22 1 15.6191 -1.4913 -3.1248 23 1 15.7843 -2.4598 -0.9078 24 6 11.8260 1.2635 -0.3130 25 6 10.5253 1.9978 0.0753 26 1 10.5873 3.0566 -0.1760 27 8 10.2435 1.8257 1.4656 28 8 5.4221 1.5316 1.0126 29 7 4.2318 1.5658 1.2206 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 2.0699 1.5875 -2.1491 36 1 0.5490 2.1253 -1.3968 37 1 1.9991 3.1541 -1.3075 38 1 4.2786 1.1812 -1.9813 39 1 8.0552 1.4851 0.7918 40 1 9.6704 -0.6852 0.1106 41 1 9.6035 -0.7005 -1.6784 42 1 15.0941 0.5508 -0.8680 43 1 12.3631 1.8358 -1.0694 44 1 12.4545 1.1319 0.5677 45 1 10.8844 2.2500 2.0524 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083843002.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:01 Heat of formation + Delta-G solvation = -27.355911 kcal Electronic energy + Delta-G solvation = -27282.696374 eV Core-core repulsion = 23303.282539 eV Total energy + Delta-G solvation = -3979.413835 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -46.10724 -41.13168 -39.48089 -38.12082 -36.46106 -35.65000 -34.23770 -33.78028 -32.91949 -30.38323 -30.31341 -28.89071 -26.64927 -26.27239 -24.94891 -24.04683 -22.42497 -22.07593 -21.69918 -20.91964 -19.53450 -18.96893 -18.83518 -18.35087 -17.32090 -17.00223 -16.80179 -16.08033 -16.02494 -15.91605 -15.71700 -15.23919 -14.90254 -14.73998 -14.61903 -14.46277 -14.33810 -13.98703 -13.66424 -13.19157 -13.01396 -12.91072 -12.83648 -12.77287 -12.51227 -12.29292 -12.18534 -12.11144 -11.99470 -11.94550 -11.88202 -11.58549 -11.53990 -11.07727 -10.87871 -10.86170 -10.76847 -10.24571 -8.94795 -7.88506 -5.24209 -0.33662 0.96343 1.41687 1.46930 1.47113 1.57683 1.81260 2.04750 2.48768 2.90842 3.14089 3.30891 3.35209 3.63021 3.77653 3.87241 3.88752 3.92148 3.98283 4.06632 4.14650 4.24585 4.44565 4.48590 4.56381 4.61923 4.64485 4.74922 4.82094 4.84864 4.91938 5.03283 5.08809 5.13702 5.18731 5.27232 5.38935 5.39732 5.47896 5.49258 5.66448 6.14594 6.24556 6.78530 6.93789 6.99336 7.07044 7.70911 8.34040 9.21578 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.026570 B = 0.002370 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.580461 B =11813.313465 C =12290.234322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C -0.012 4.012 4 H 0.092 0.908 5 C -0.146 4.146 6 C 0.024 3.976 7 C -0.140 4.140 8 C -0.087 4.087 9 C 0.606 3.394 10 O -0.544 6.544 11 N -0.680 5.680 12 C 0.150 3.850 13 H 0.106 0.894 14 C 0.130 3.870 15 N -0.621 5.621 16 C -0.243 4.243 17 H 0.078 0.922 18 C -0.062 4.062 19 N -0.948 5.948 20 Si 0.979 3.021 21 H -0.269 1.269 22 H -0.290 1.290 23 H -0.290 1.290 24 C 0.159 3.841 25 C 0.091 3.909 26 H 0.096 0.904 27 O -0.566 6.566 28 O 0.110 5.890 29 N -0.362 5.362 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.050 0.950 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.088 0.912 37 H 0.057 0.943 38 H 0.199 0.801 39 H 0.422 0.578 40 H 0.026 0.974 41 H 0.036 0.964 42 H 0.249 0.751 43 H 0.028 0.972 44 H 0.027 0.973 45 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.325 5.838 2.871 26.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C -0.031 4.031 4 H 0.111 0.889 5 C -0.204 4.204 6 C -0.134 4.134 7 C -0.163 4.163 8 C -0.153 4.153 9 C 0.390 3.610 10 O -0.422 6.422 11 N -0.331 5.331 12 C 0.044 3.956 13 H 0.124 0.876 14 C 0.003 3.997 15 N -0.348 5.348 16 C -0.372 4.372 17 H 0.096 0.904 18 C -0.255 4.255 19 N -0.597 5.597 20 Si 0.808 3.192 21 H -0.194 1.194 22 H -0.216 1.216 23 H -0.217 1.217 24 C 0.034 3.966 25 C 0.031 3.969 26 H 0.113 0.887 27 O -0.375 6.375 28 O 0.039 5.961 29 N -0.064 5.064 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.107 0.893 37 H 0.076 0.924 38 H 0.216 0.784 39 H 0.261 0.739 40 H 0.044 0.956 41 H 0.054 0.946 42 H 0.059 0.941 43 H 0.046 0.954 44 H 0.045 0.955 45 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -25.844 5.534 3.057 26.606 hybrid contribution 1.812 -0.487 -0.337 1.906 sum -24.032 5.046 2.721 24.706 Atomic orbital electron populations 1.21802 0.93501 1.02515 1.02831 1.21563 0.97578 0.94010 1.02215 1.19780 0.83243 0.98675 1.01444 0.88935 1.21920 1.03291 1.00255 0.94907 1.24102 1.00154 1.01548 0.87558 1.23088 0.88779 1.01377 1.03006 1.24001 0.96720 1.09755 0.84797 1.16702 0.81738 0.76863 0.85708 1.90869 1.85925 1.51224 1.14215 1.45518 1.04139 1.71182 1.12267 1.22141 0.80171 0.96313 0.97006 0.87635 1.21899 0.84337 0.95200 0.98258 1.44553 1.00786 1.16306 1.73162 1.19444 0.87856 0.96198 1.33717 0.90386 1.25608 0.98179 0.99693 1.02017 1.70113 1.12312 1.24562 1.52688 0.84999 0.78634 0.78401 0.77207 1.19396 1.21646 1.21720 1.21727 0.92587 0.85415 0.96877 1.23184 0.93119 0.98559 0.82069 0.88682 1.86217 1.55247 1.80585 1.15448 1.84993 1.19639 1.66949 1.24557 1.73724 0.89366 1.18287 1.25058 0.90965 0.92097 0.92322 0.93075 0.91205 0.91477 0.89331 0.92436 0.78432 0.73917 0.95631 0.94550 0.94142 0.95431 0.95510 0.74949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.67 71.98 0.70 -0.58 16 2 C -0.12 -1.43 5.38 30.60 0.16 -1.26 16 3 C -0.01 -0.17 2.85 -11.54 -0.03 -0.20 16 4 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 5 C -0.15 -1.42 8.57 71.98 0.62 -0.80 16 6 C 0.02 0.49 6.20 43.56 0.27 0.76 16 7 C -0.14 -2.96 10.13 22.68 0.23 -2.73 16 8 C -0.09 -2.18 7.29 24.39 0.18 -2.01 16 9 C 0.61 18.03 7.82 86.69 0.68 18.70 16 10 O -0.54 -19.36 16.55 -3.97 -0.07 -19.42 16 11 N -0.68 -19.97 5.16 -439.18 -2.27 -22.23 16 12 C 0.15 5.27 3.30 46.38 0.15 5.42 16 13 H 0.11 3.87 7.54 -2.39 -0.02 3.86 16 14 C 0.13 5.60 6.92 86.85 0.60 6.20 16 15 N -0.62 -32.02 3.39 -691.97 -2.35 -34.37 16 16 C -0.24 -13.77 10.28 84.03 0.86 -12.91 16 17 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 18 C -0.06 -3.49 5.49 84.86 0.47 -3.02 16 19 N -0.95 -55.42 10.31 21.65 0.22 -55.20 16 20 Si 0.98 45.71 29.55 68.60 2.03 47.74 16 21 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 22 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 23 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 24 C 0.16 7.42 5.14 86.73 0.45 7.86 16 25 C 0.09 3.06 4.20 31.78 0.13 3.20 16 26 H 0.10 2.68 8.14 -2.39 -0.02 2.67 16 27 O -0.57 -16.60 12.14 -148.98 -1.81 -18.41 16 28 O 0.11 2.74 11.04 65.79 0.73 3.47 16 29 N -0.36 -8.82 12.04 -48.85 -0.59 -9.41 16 30 H 0.07 0.45 6.57 -2.39 -0.02 0.44 16 31 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.07 0.62 7.49 -2.39 -0.02 0.60 16 36 H 0.09 0.55 6.56 -2.39 -0.02 0.53 16 37 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 38 H 0.20 3.40 7.66 -2.91 -0.02 3.38 16 39 H 0.42 11.17 7.41 -92.71 -0.69 10.48 16 40 H 0.03 1.12 8.14 -2.39 -0.02 1.11 16 41 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.25 14.11 8.31 -92.70 -0.77 13.34 16 43 H 0.03 1.43 7.38 -2.38 -0.02 1.41 16 44 H 0.03 1.38 7.43 -2.39 -0.02 1.36 16 45 H 0.40 8.75 9.12 -74.06 -0.68 8.08 16 Total: -1.00 -69.52 371.35 1.02 -68.50 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: -0.34 Total: 20.69 kcal Atomic # 6 Polarization: 13.17 SS G_CDS: 5.46 Total: 18.63 kcal Atomic # 7 Polarization: -116.22 SS G_CDS: -4.98 Total: -121.21 kcal Atomic # 8 Polarization: -33.21 SS G_CDS: -1.15 Total: -34.36 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -69.52 1.02 -68.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083843002.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.144 kcal (2) G-P(sol) polarization free energy of solvation -69.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds