Wall clock time and date at job start Tue Mar 31 2020 14:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42899 * 109.47049 * 2 1 4 4 C 1.35353 * 116.99861 * 180.02562 * 3 2 1 5 5 N 1.30555 * 125.44957 * 180.02562 * 4 3 2 6 6 C 1.36320 * 108.38312 * 179.97438 * 5 4 3 7 7 C 1.47373 * 126.41163 * 179.97438 * 6 5 4 8 8 O 1.21623 * 120.00142 * 180.02562 * 7 6 5 9 9 N 1.34777 * 119.99556 * 0.29161 * 7 6 5 10 10 C 1.46505 * 119.99724 * 179.72665 * 9 7 6 11 11 C 1.52999 * 109.47192 * 180.02562 * 10 9 7 12 12 H 1.08998 * 110.43400 * 307.54826 * 11 10 9 13 13 C 1.54899 * 110.48432 * 70.22356 * 11 10 9 14 14 C 1.54897 * 102.74563 * 156.62226 * 13 11 10 15 15 C 1.54263 * 104.19440 * 322.05722 * 14 13 11 16 16 H 1.08997 * 110.07024 * 142.91810 * 15 14 13 17 17 N 1.46497 * 110.03489 * 264.32302 * 15 14 13 18 18 C 1.36937 * 120.00462 * 272.17133 * 17 15 14 19 19 H 1.07996 * 119.99521 * 359.97438 * 18 17 15 20 20 C 1.38814 * 120.00051 * 179.97438 * 18 17 15 21 21 N 1.31620 * 120.00290 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99619 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47298 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.46758 * 120.00640 * 22 20 18 25 25 H 1.48498 * 109.47320 * 239.99964 * 22 20 18 26 26 C 1.53877 * 106.60011 * 23.61240 * 15 14 13 27 27 C 1.35912 * 107.17907 * 0.25263 * 6 5 4 28 28 O 1.34205 * 125.44863 * 359.97438 * 4 3 2 29 29 H 1.09001 * 109.47088 * 59.99528 * 1 2 3 30 30 H 1.08992 * 109.47238 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.46603 * 300.00123 * 1 2 3 32 32 H 1.08997 * 109.46971 * 240.00056 * 2 1 3 33 33 H 1.08997 * 109.47300 * 120.00004 * 2 1 3 34 34 H 0.97000 * 120.00483 * 359.73098 * 9 7 6 35 35 H 1.09003 * 109.46699 * 299.99993 * 10 9 7 36 36 H 1.08993 * 109.47199 * 60.00006 * 10 9 7 37 37 H 1.08991 * 110.75730 * 274.93492 * 13 11 10 38 38 H 1.08996 * 110.75318 * 38.31242 * 13 11 10 39 39 H 1.09001 * 110.48410 * 203.38115 * 14 13 11 40 40 H 1.09002 * 110.59429 * 80.79162 * 14 13 11 41 41 H 0.97006 * 119.99774 * 92.16367 * 17 15 14 42 42 H 0.96991 * 119.99891 * 179.97438 * 21 20 18 43 43 H 1.09000 * 110.03023 * 240.71282 * 26 15 14 44 44 H 1.09000 * 110.03119 * 119.28765 * 26 15 14 45 45 H 1.07999 * 126.45707 * 179.73946 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3482 1.5246 -0.0005 5 7 3.9595 2.6782 -0.0001 6 6 5.3039 2.4523 -0.0004 7 6 6.3631 3.4769 -0.0006 8 8 7.5325 3.1428 -0.0012 9 7 6.0358 4.7844 0.0053 10 6 7.0888 5.8030 0.0112 11 6 6.4524 7.1943 0.0178 12 1 5.7285 7.2856 -0.7920 13 6 5.7796 7.4761 1.3843 14 6 5.7533 9.0239 1.4396 15 6 7.0925 9.4480 0.8021 16 1 6.9544 10.3511 0.2076 17 7 8.0931 9.6830 1.8460 18 6 8.1998 10.9186 2.4266 19 1 7.5465 11.7200 2.1145 20 6 9.1476 11.1410 3.4161 21 7 9.9441 10.1645 3.7960 22 14 9.2935 12.8268 4.2075 23 1 8.2911 13.7437 3.6077 24 1 9.0470 12.7112 5.6673 25 1 10.6580 13.3654 3.9771 26 6 7.5370 8.2847 -0.1019 27 6 5.4846 1.1052 -0.0066 28 8 4.2631 0.5427 -0.0006 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 5.1032 5.0509 0.0058 35 1 7.7063 5.6820 0.9012 36 1 7.7080 5.6906 -0.8787 37 1 4.7678 7.0716 1.4075 38 1 6.3778 7.0706 2.2003 39 1 5.6966 9.3678 2.4724 40 1 4.9153 9.4140 0.8619 41 1 8.6801 8.9632 2.1260 42 1 10.6066 10.3201 4.4871 43 1 8.4971 7.8950 0.2362 44 1 7.6138 8.6232 -1.1351 45 1 6.4309 0.5847 -0.0124 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086745979.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:07 Heat of formation + Delta-G solvation = -72.745698 kcal Electronic energy + Delta-G solvation = -26387.588812 eV Core-core repulsion = 22406.206728 eV Total energy + Delta-G solvation = -3981.382084 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.56735 -40.81625 -39.96558 -39.40537 -36.33362 -36.08257 -34.91853 -32.90225 -32.47008 -30.79861 -30.17489 -28.86109 -26.41487 -25.24555 -24.68885 -24.26929 -23.20172 -21.76655 -21.13819 -20.71862 -20.01573 -19.11456 -18.66351 -18.36883 -17.47997 -17.29676 -16.73601 -16.58857 -16.41914 -16.09465 -15.99659 -15.63893 -15.14339 -14.95385 -14.51615 -14.41626 -14.19837 -13.92500 -13.56937 -13.54025 -13.13958 -12.97430 -12.67254 -12.54676 -12.48801 -12.34579 -12.10214 -11.98561 -11.94865 -11.80125 -11.71507 -11.62510 -11.48555 -11.43724 -11.29070 -10.89270 -10.20359 -9.75933 -8.94500 -7.91783 -5.18979 -0.00022 0.82494 0.88330 1.47209 1.47816 1.57870 1.63569 2.06683 2.16476 2.57958 3.30409 3.40525 3.67675 3.70835 3.80896 3.86337 3.93048 3.95682 4.07153 4.21778 4.26828 4.37543 4.43895 4.55733 4.59725 4.64603 4.70407 4.80538 4.83649 4.86985 4.87370 4.94783 5.09718 5.15330 5.19260 5.24101 5.30526 5.45822 5.52138 5.59746 5.62474 5.67482 6.26650 6.31997 6.55238 7.04513 7.36516 8.16894 8.37863 9.32139 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.022607 B = 0.001999 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.261992 B =14002.190584 C =14492.462651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.041 3.959 3 O -0.256 6.256 4 C 0.385 3.615 5 N -0.481 5.481 6 C -0.076 4.076 7 C 0.600 3.400 8 O -0.567 6.567 9 N -0.698 5.698 10 C 0.132 3.868 11 C -0.085 4.085 12 H 0.107 0.893 13 C -0.107 4.107 14 C -0.139 4.139 15 C 0.162 3.838 16 H 0.046 0.954 17 N -0.734 5.734 18 C -0.234 4.234 19 H 0.076 0.924 20 C -0.081 4.081 21 N -0.972 5.972 22 Si 0.971 3.029 23 H -0.265 1.265 24 H -0.296 1.296 25 H -0.295 1.295 26 C -0.115 4.115 27 C 0.029 3.971 28 O -0.216 6.216 29 H 0.069 0.931 30 H 0.111 0.889 31 H 0.067 0.933 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.417 0.583 35 H 0.052 0.948 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.042 0.958 39 H 0.038 0.962 40 H 0.076 0.924 41 H 0.370 0.630 42 H 0.249 0.751 43 H 0.054 0.946 44 H 0.084 0.916 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.737 -24.712 -12.153 33.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.032 4.032 3 O -0.165 6.165 4 C 0.138 3.862 5 N -0.227 5.227 6 C -0.194 4.194 7 C 0.386 3.614 8 O -0.447 6.447 9 N -0.348 5.348 10 C 0.009 3.991 11 C -0.104 4.104 12 H 0.125 0.875 13 C -0.145 4.145 14 C -0.179 4.179 15 C 0.053 3.947 16 H 0.064 0.936 17 N -0.374 5.374 18 C -0.366 4.366 19 H 0.093 0.907 20 C -0.273 4.273 21 N -0.623 5.623 22 Si 0.800 3.200 23 H -0.190 1.190 24 H -0.224 1.224 25 H -0.222 1.222 26 C -0.153 4.153 27 C -0.044 4.044 28 O -0.106 6.106 29 H 0.088 0.912 30 H 0.129 0.871 31 H 0.086 0.914 32 H 0.104 0.896 33 H 0.102 0.898 34 H 0.254 0.746 35 H 0.071 0.929 36 H 0.092 0.908 37 H 0.098 0.902 38 H 0.061 0.939 39 H 0.057 0.943 40 H 0.095 0.905 41 H 0.202 0.798 42 H 0.058 0.942 43 H 0.073 0.927 44 H 0.103 0.897 45 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges -19.522 -24.065 -12.143 33.282 hybrid contribution 0.627 0.135 1.022 1.206 sum -18.895 -23.929 -11.122 32.455 Atomic orbital electron populations 1.21867 0.89861 1.05068 1.03865 1.23439 0.97902 0.77742 1.04161 1.86423 1.07892 1.33301 1.88888 1.23338 0.84182 0.81434 0.97237 1.71004 1.04131 1.22777 1.24833 1.21510 0.89924 0.94642 1.13309 1.16869 0.86121 0.82276 0.76156 1.90833 1.19257 1.81966 1.52652 1.45771 1.11626 1.04714 1.72704 1.21441 0.89608 0.86179 1.01888 1.22111 0.97750 0.91734 0.98793 0.87529 1.22437 1.00356 0.95541 0.96132 1.22957 0.98657 0.96029 1.00247 1.21135 0.88669 0.96020 0.88845 0.93621 1.42768 1.40470 1.10439 1.43690 1.19699 1.13249 0.89977 1.13697 0.90654 1.25545 0.99362 1.01136 1.01236 1.69832 1.24963 1.32984 1.34518 0.85102 0.77219 0.79990 0.77661 1.18960 1.22380 1.22198 1.22363 0.98084 0.94693 1.00200 1.25579 0.86637 0.92166 0.99996 1.84434 1.16034 1.38631 1.71536 0.91235 0.87077 0.91422 0.89557 0.89792 0.74627 0.92929 0.90811 0.90190 0.93875 0.94307 0.90503 0.79758 0.94240 0.92748 0.89725 0.71777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.59 10.28 71.98 0.74 0.15 16 2 C 0.04 0.30 6.38 71.98 0.46 0.76 16 3 O -0.26 -4.08 10.19 -64.22 -0.65 -4.74 16 4 C 0.38 7.36 8.98 130.43 1.17 8.53 16 5 N -0.48 -11.17 11.10 -419.38 -4.65 -15.83 16 6 C -0.08 -1.72 6.99 40.31 0.28 -1.44 16 7 C 0.60 16.16 7.81 86.65 0.68 16.84 16 8 O -0.57 -18.36 16.89 -4.10 -0.07 -18.43 16 9 N -0.70 -17.20 5.44 -466.40 -2.54 -19.73 16 10 C 0.13 3.51 4.96 86.38 0.43 3.94 16 11 C -0.09 -2.16 2.89 -9.72 -0.03 -2.19 16 12 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 13 C -0.11 -3.13 6.19 31.89 0.20 -2.93 16 14 C -0.14 -4.77 6.54 31.67 0.21 -4.56 16 15 C 0.16 6.31 3.55 45.72 0.16 6.47 16 16 H 0.05 1.80 8.08 -2.39 -0.02 1.78 16 17 N -0.73 -37.50 5.08 -319.52 -1.62 -39.12 16 18 C -0.23 -13.21 9.96 84.03 0.84 -12.37 16 19 H 0.08 4.09 7.83 -2.91 -0.02 4.06 16 20 C -0.08 -4.76 5.50 84.86 0.47 -4.29 16 21 N -0.97 -61.05 13.06 21.65 0.28 -60.77 16 22 Si 0.97 47.23 29.55 68.60 2.03 49.26 16 23 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 24 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 25 H -0.29 -14.33 7.11 99.48 0.71 -13.63 16 26 C -0.11 -3.59 6.14 31.32 0.19 -3.40 16 27 C 0.03 0.47 11.93 67.28 0.80 1.27 16 28 O -0.22 -3.36 10.20 18.90 0.19 -3.17 16 29 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.11 -0.07 8.14 -2.39 -0.02 -0.09 16 31 H 0.07 0.35 8.14 -2.38 -0.02 0.33 16 32 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.42 9.08 8.17 -92.71 -0.76 8.32 16 35 H 0.05 1.66 8.02 -2.39 -0.02 1.64 16 36 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.04 1.49 7.96 -2.39 -0.02 1.47 16 39 H 0.04 1.58 8.04 -2.39 -0.02 1.57 16 40 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 41 H 0.37 20.57 7.52 -92.70 -0.70 19.87 16 42 H 0.25 15.17 8.31 -92.72 -0.77 14.40 16 43 H 0.05 1.93 7.31 -2.39 -0.02 1.91 16 44 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 45 H 0.27 2.44 8.06 -2.91 -0.02 2.41 16 Total: -1.00 -74.37 381.64 -0.88 -75.25 By element: Atomic # 1 Polarization: 30.95 SS G_CDS: -0.44 Total: 30.51 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: 6.60 Total: 6.77 kcal Atomic # 7 Polarization: -126.92 SS G_CDS: -8.53 Total: -135.45 kcal Atomic # 8 Polarization: -25.81 SS G_CDS: -0.53 Total: -26.34 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 2.03 Total: 49.26 kcal Total: -74.37 -0.88 -75.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086745979.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.505 kcal (2) G-P(sol) polarization free energy of solvation -74.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds