Wall clock time and date at job start Tue Mar 31 2020 14:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35350 * 116.99922 * 2 1 4 4 N 1.30561 * 125.44302 * 180.34197 * 3 2 1 5 5 C 1.36330 * 108.37740 * 180.12524 * 4 3 2 6 6 C 1.47373 * 126.40906 * 179.82112 * 5 4 3 7 7 O 1.21622 * 119.99973 * 179.68732 * 6 5 4 8 8 N 1.34777 * 119.99943 * 359.69027 * 6 5 4 9 9 C 1.46497 * 120.00116 * 180.02562 * 8 6 5 10 10 C 1.52996 * 109.47458 * 179.97438 * 9 8 6 11 11 C 1.53001 * 109.47434 * 179.97438 * 10 9 8 12 12 H 1.09002 * 110.64202 * 54.29633 * 11 10 9 13 13 C 1.54322 * 110.71941 * 291.15521 * 11 10 9 14 14 N 1.47018 * 107.27336 * 219.26699 * 13 11 10 15 15 C 1.36937 * 125.64797 * 178.97600 * 14 13 11 16 16 H 1.08000 * 120.00262 * 0.02562 * 15 14 13 17 17 C 1.38813 * 119.99548 * 179.97438 * 15 14 13 18 18 N 1.31615 * 120.00732 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99599 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46881 * 90.00394 * 19 17 15 21 21 H 1.48499 * 109.47149 * 210.00031 * 19 17 15 22 22 H 1.48496 * 109.47418 * 330.00294 * 19 17 15 23 23 C 1.47426 * 108.70104 * 358.94171 * 14 13 11 24 24 C 1.54909 * 104.83381 * 24.12870 * 23 14 13 25 25 H 1.08997 * 111.00194 * 81.06198 * 24 23 14 26 26 C 1.53003 * 111.00221 * 204.91626 * 24 23 14 27 27 C 1.35913 * 107.17759 * 359.56227 * 5 4 3 28 28 O 1.34199 * 125.45212 * 359.96979 * 3 2 1 29 29 H 1.09004 * 109.47506 * 60.00520 * 1 2 3 30 30 H 1.09001 * 109.47220 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47322 * 300.00425 * 1 2 3 32 32 H 0.96998 * 120.00168 * 359.97438 * 8 6 5 33 33 H 1.08999 * 109.47060 * 59.99669 * 9 8 6 34 34 H 1.09005 * 109.47202 * 299.99759 * 9 8 6 35 35 H 1.08999 * 109.47244 * 59.99796 * 10 9 8 36 36 H 1.09006 * 109.47179 * 299.99779 * 10 9 8 37 37 H 1.08998 * 109.88021 * 338.68403 * 13 11 10 38 38 H 1.09005 * 109.88017 * 99.69091 * 13 11 10 39 39 H 0.96996 * 120.00556 * 179.97438 * 18 17 15 40 40 H 1.08998 * 110.36876 * 142.97187 * 23 14 13 41 41 H 1.09003 * 110.36123 * 265.28869 * 23 14 13 42 42 H 1.08998 * 109.46949 * 172.19393 * 26 24 23 43 43 H 1.08994 * 109.47021 * 292.19568 * 26 24 23 44 44 H 1.09005 * 109.47193 * 52.20022 * 26 24 23 45 45 H 1.08002 * 126.45594 * 180.27038 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0434 1.2060 0.0000 4 7 3.3349 1.3977 -0.0063 5 6 3.5701 2.7406 -0.0011 6 6 4.8892 3.3976 -0.0017 7 8 4.9640 4.6115 -0.0023 8 7 6.0128 2.6532 -0.0015 9 6 7.3242 3.3062 -0.0014 10 6 8.4237 2.2424 -0.0005 11 6 9.7933 2.9245 -0.0011 12 1 9.8719 3.6293 0.8266 13 6 10.0498 3.6330 -1.3479 14 7 11.4636 3.4206 -1.6906 15 6 12.0872 3.8736 -2.8225 16 1 11.5318 4.4407 -3.5548 17 6 13.4334 3.6047 -3.0280 18 7 14.1105 2.9140 -2.1354 19 14 14.2839 4.2220 -4.5724 20 1 14.8474 5.5728 -4.3209 21 1 15.3794 3.2895 -4.9406 22 1 13.3013 4.2945 -5.6833 23 6 12.0990 2.6399 -0.6134 24 6 10.9338 1.8744 0.0618 25 1 10.6735 0.9804 -0.5048 26 6 11.2758 1.5223 1.5110 27 6 2.3603 3.3600 -0.0012 28 8 1.4228 2.3958 -0.0006 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 5.9532 1.6850 -0.0006 33 1 7.4202 3.9283 0.8884 34 1 7.4205 3.9280 -0.8915 35 1 8.3279 1.6200 -0.8902 36 1 8.3274 1.6209 0.8898 37 1 9.4125 3.2027 -2.1204 38 1 9.8456 4.6993 -1.2505 39 1 15.0511 2.7258 -2.2792 40 1 12.8229 1.9391 -1.0291 41 1 12.5816 3.3049 0.1029 42 1 10.3944 1.1108 2.0026 43 1 12.0780 0.7846 1.5260 44 1 11.5987 2.4210 2.0367 45 1 2.1849 4.4256 -0.0019 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103278639.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:53 Heat of formation + Delta-G solvation = -25.207222 kcal Electronic energy + Delta-G solvation = -26609.646131 eV Core-core repulsion = 22630.325470 eV Total energy + Delta-G solvation = -3979.320661 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.85395 -39.74137 -39.20217 -38.09212 -35.35422 -35.22227 -33.19347 -31.20346 -30.64809 -30.38424 -27.96215 -27.04673 -25.69805 -24.73243 -23.62187 -22.77455 -21.89925 -20.93705 -19.76949 -19.34361 -19.03199 -17.95055 -17.52475 -16.81160 -16.79026 -15.87313 -15.81928 -15.75199 -15.47569 -14.95577 -14.33693 -14.13676 -13.89113 -13.63346 -13.50300 -12.93617 -12.84570 -12.75777 -12.47290 -12.03591 -11.99049 -11.61394 -11.45641 -11.41403 -11.18608 -11.07190 -10.96557 -10.80125 -10.70414 -10.42380 -10.05102 -9.84177 -9.76389 -9.65608 -9.27047 -9.22360 -8.99154 -8.58797 -6.75225 -5.58762 -2.99964 0.74406 1.47590 1.67646 2.30117 2.98822 3.09436 3.44110 3.48923 3.50915 4.13279 4.32528 4.43134 4.50121 4.54597 4.70386 4.87421 4.97976 5.09448 5.17020 5.34438 5.37747 5.51803 5.59587 5.62563 5.72925 5.83032 5.99193 6.03180 6.16120 6.20353 6.29976 6.32698 6.37870 6.42302 6.62430 6.68687 6.76278 6.90011 7.04916 7.09310 7.43751 7.61962 7.70665 7.93681 8.02128 8.43687 9.29311 9.90381 10.56090 11.44891 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.020583 B = 0.002094 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.997067 B =13369.591821 C =13786.817947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.244 6.244 3 C 0.381 3.619 4 N -0.455 5.455 5 C -0.045 4.045 6 C 0.600 3.400 7 O -0.534 6.534 8 N -0.707 5.707 9 C 0.117 3.883 10 C -0.117 4.117 11 C -0.092 4.092 12 H 0.073 0.927 13 C 0.139 3.861 14 N -0.606 5.606 15 C -0.219 4.219 16 H 0.076 0.924 17 C -0.014 4.014 18 N -0.923 5.923 19 Si 0.913 3.087 20 H -0.290 1.290 21 H -0.291 1.291 22 H -0.282 1.282 23 C 0.159 3.841 24 C -0.115 4.115 25 H 0.068 0.932 26 C -0.133 4.133 27 C 0.003 3.997 28 O -0.226 6.226 29 H 0.068 0.932 30 H 0.120 0.880 31 H 0.068 0.932 32 H 0.410 0.590 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.023 0.977 38 H 0.019 0.981 39 H 0.251 0.749 40 H 0.104 0.896 41 H 0.011 0.989 42 H 0.043 0.957 43 H 0.052 0.948 44 H 0.051 0.949 45 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.553 -5.797 8.105 29.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.152 6.152 3 C 0.134 3.866 4 N -0.201 5.201 5 C -0.164 4.164 6 C 0.385 3.615 7 O -0.411 6.411 8 N -0.357 5.357 9 C -0.006 4.006 10 C -0.155 4.155 11 C -0.112 4.112 12 H 0.091 0.909 13 C 0.013 3.987 14 N -0.331 5.331 15 C -0.348 4.348 16 H 0.094 0.906 17 C -0.209 4.209 18 N -0.572 5.572 19 Si 0.744 3.256 20 H -0.217 1.217 21 H -0.217 1.217 22 H -0.207 1.207 23 C 0.034 3.966 24 C -0.134 4.134 25 H 0.087 0.913 26 C -0.191 4.191 27 C -0.069 4.069 28 O -0.117 6.117 29 H 0.087 0.913 30 H 0.138 0.862 31 H 0.086 0.914 32 H 0.245 0.755 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.040 0.960 38 H 0.037 0.963 39 H 0.062 0.938 40 H 0.122 0.878 41 H 0.029 0.971 42 H 0.062 0.938 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -26.828 -5.660 7.976 28.555 hybrid contribution -0.411 0.449 -0.771 0.982 sum -27.239 -5.211 7.205 28.654 Atomic orbital electron populations 1.23321 0.75004 1.05769 1.03047 1.86397 1.23735 1.15803 1.89218 1.23375 0.85624 0.79577 0.97985 1.71113 1.09776 1.15696 1.23506 1.21743 0.95993 0.88338 1.10359 1.16636 0.81951 0.85981 0.76978 1.90857 1.86693 1.12661 1.50921 1.45900 1.05648 1.11000 1.73192 1.21600 0.79990 0.96028 1.02987 1.21790 0.93671 0.97465 1.02575 1.22138 0.92651 0.97693 0.98675 0.90886 1.21376 0.87850 0.96498 0.92978 1.44504 1.04488 1.63040 1.21102 1.19092 0.92419 1.27490 0.95768 0.90565 1.24783 0.96459 1.00977 0.98668 1.69803 1.08341 1.44315 1.34724 0.86083 0.79172 0.77929 0.82396 1.21704 1.21712 1.20743 1.21971 0.92253 0.93970 0.88423 1.22632 0.97387 0.97677 0.95753 0.91347 1.21635 1.00225 1.01033 0.96204 1.24995 0.84890 0.93825 1.03210 1.84389 1.39553 1.15872 1.71860 0.91337 0.86202 0.91360 0.75473 0.91135 0.90597 0.91060 0.91456 0.95959 0.96267 0.93830 0.87798 0.97078 0.93797 0.92922 0.93034 0.74665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.07 10.73 101.05 1.08 1.16 16 2 O -0.24 -1.92 10.55 -40.97 -0.43 -2.36 16 3 C 0.38 3.71 8.98 52.22 0.47 4.17 16 4 N -0.46 -5.33 11.10 -11.71 -0.13 -5.46 16 5 C -0.05 -0.52 6.99 -82.98 -0.58 -1.10 16 6 C 0.60 8.01 7.81 -12.54 -0.10 7.92 16 7 O -0.53 -8.48 16.89 5.26 0.09 -8.39 16 8 N -0.71 -8.78 5.55 -61.40 -0.34 -9.12 16 9 C 0.12 1.56 5.54 -4.05 -0.02 1.53 16 10 C -0.12 -1.58 4.73 -26.73 -0.13 -1.70 16 11 C -0.09 -1.57 2.42 -88.79 -0.21 -1.79 16 12 H 0.07 1.22 8.04 -51.93 -0.42 0.80 16 13 C 0.14 2.95 6.10 -3.07 -0.02 2.93 16 14 N -0.61 -15.88 3.39 -170.07 -0.58 -16.46 16 15 C -0.22 -6.26 10.27 -15.06 -0.15 -6.42 16 16 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 17 C -0.01 -0.39 5.49 -17.43 -0.10 -0.49 16 18 N -0.92 -27.35 10.09 55.49 0.56 -26.79 16 19 Si 0.91 22.54 29.55 -169.99 -5.02 17.51 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 C 0.16 3.89 5.36 -2.53 -0.01 3.88 16 24 C -0.11 -2.15 3.09 -88.47 -0.27 -2.42 16 25 H 0.07 1.29 8.05 -51.93 -0.42 0.87 16 26 C -0.13 -2.08 9.31 37.16 0.35 -1.74 16 27 C 0.00 0.03 11.93 29.90 0.36 0.38 16 28 O -0.23 -1.88 10.20 -17.73 -0.18 -2.06 16 29 H 0.07 0.17 8.14 -51.93 -0.42 -0.26 16 30 H 0.12 0.08 8.14 -51.93 -0.42 -0.34 16 31 H 0.07 0.16 8.14 -51.93 -0.42 -0.27 16 32 H 0.41 4.55 8.20 -40.82 -0.33 4.21 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.08 1.13 7.58 -51.93 -0.39 0.73 16 35 H 0.07 0.99 8.00 -51.93 -0.42 0.57 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.02 0.47 7.73 -51.93 -0.40 0.07 16 38 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 40 H 0.10 2.88 5.87 -51.93 -0.31 2.57 16 41 H 0.01 0.29 7.98 -51.93 -0.41 -0.12 16 42 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.05 0.81 8.07 -51.93 -0.42 0.39 16 45 H 0.24 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 376.27 15.07 5.67 5.67 Total: -1.00 -34.35 376.27 -6.58 -40.93 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -6.87 Total: 0.21 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: 0.66 Total: 6.32 kcal Atomic # 7 Polarization: -57.34 SS G_CDS: -0.49 Total: -57.83 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: -0.52 Total: -12.81 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.35 -6.58 -40.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103278639.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.721 kcal (2) G-P(sol) polarization free energy of solvation -34.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds