Wall clock time and date at job start Tue Mar 31 2020 14:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35350 * 116.99922 * 2 1 4 4 N 1.30561 * 125.44302 * 180.34197 * 3 2 1 5 5 C 1.36330 * 108.37740 * 180.12524 * 4 3 2 6 6 C 1.47373 * 126.40906 * 179.82112 * 5 4 3 7 7 O 1.21622 * 119.99973 * 179.68732 * 6 5 4 8 8 N 1.34777 * 119.99943 * 359.69027 * 6 5 4 9 9 C 1.46497 * 120.00116 * 180.02562 * 8 6 5 10 10 C 1.52996 * 109.47458 * 179.97438 * 9 8 6 11 11 C 1.53001 * 109.47434 * 179.97438 * 10 9 8 12 12 H 1.09002 * 110.64202 * 54.29633 * 11 10 9 13 13 C 1.54322 * 110.71941 * 291.15521 * 11 10 9 14 14 N 1.47018 * 107.27336 * 219.26699 * 13 11 10 15 15 C 1.36937 * 125.64797 * 178.97600 * 14 13 11 16 16 H 1.08000 * 120.00262 * 0.02562 * 15 14 13 17 17 C 1.38813 * 119.99548 * 179.97438 * 15 14 13 18 18 N 1.31615 * 120.00732 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99599 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46881 * 90.00394 * 19 17 15 21 21 H 1.48499 * 109.47149 * 210.00031 * 19 17 15 22 22 H 1.48496 * 109.47418 * 330.00294 * 19 17 15 23 23 C 1.47426 * 108.70104 * 358.94171 * 14 13 11 24 24 C 1.54909 * 104.83381 * 24.12870 * 23 14 13 25 25 H 1.08997 * 111.00194 * 81.06198 * 24 23 14 26 26 C 1.53003 * 111.00221 * 204.91626 * 24 23 14 27 27 C 1.35913 * 107.17759 * 359.56227 * 5 4 3 28 28 O 1.34199 * 125.45212 * 359.96979 * 3 2 1 29 29 H 1.09004 * 109.47506 * 60.00520 * 1 2 3 30 30 H 1.09001 * 109.47220 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47322 * 300.00425 * 1 2 3 32 32 H 0.96998 * 120.00168 * 359.97438 * 8 6 5 33 33 H 1.08999 * 109.47060 * 59.99669 * 9 8 6 34 34 H 1.09005 * 109.47202 * 299.99759 * 9 8 6 35 35 H 1.08999 * 109.47244 * 59.99796 * 10 9 8 36 36 H 1.09006 * 109.47179 * 299.99779 * 10 9 8 37 37 H 1.08998 * 109.88021 * 338.68403 * 13 11 10 38 38 H 1.09005 * 109.88017 * 99.69091 * 13 11 10 39 39 H 0.96996 * 120.00556 * 179.97438 * 18 17 15 40 40 H 1.08998 * 110.36876 * 142.97187 * 23 14 13 41 41 H 1.09003 * 110.36123 * 265.28869 * 23 14 13 42 42 H 1.08998 * 109.46949 * 172.19393 * 26 24 23 43 43 H 1.08994 * 109.47021 * 292.19568 * 26 24 23 44 44 H 1.09005 * 109.47193 * 52.20022 * 26 24 23 45 45 H 1.08002 * 126.45594 * 180.27038 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0434 1.2060 0.0000 4 7 3.3349 1.3977 -0.0063 5 6 3.5701 2.7406 -0.0011 6 6 4.8892 3.3976 -0.0017 7 8 4.9640 4.6115 -0.0023 8 7 6.0128 2.6532 -0.0015 9 6 7.3242 3.3062 -0.0014 10 6 8.4237 2.2424 -0.0005 11 6 9.7933 2.9245 -0.0011 12 1 9.8719 3.6293 0.8266 13 6 10.0498 3.6330 -1.3479 14 7 11.4636 3.4206 -1.6906 15 6 12.0872 3.8736 -2.8225 16 1 11.5318 4.4407 -3.5548 17 6 13.4334 3.6047 -3.0280 18 7 14.1105 2.9140 -2.1354 19 14 14.2839 4.2220 -4.5724 20 1 14.8474 5.5728 -4.3209 21 1 15.3794 3.2895 -4.9406 22 1 13.3013 4.2945 -5.6833 23 6 12.0990 2.6399 -0.6134 24 6 10.9338 1.8744 0.0618 25 1 10.6735 0.9804 -0.5048 26 6 11.2758 1.5223 1.5110 27 6 2.3603 3.3600 -0.0012 28 8 1.4228 2.3958 -0.0006 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 5.9532 1.6850 -0.0006 33 1 7.4202 3.9283 0.8884 34 1 7.4205 3.9280 -0.8915 35 1 8.3279 1.6200 -0.8902 36 1 8.3274 1.6209 0.8898 37 1 9.4125 3.2027 -2.1204 38 1 9.8456 4.6993 -1.2505 39 1 15.0511 2.7258 -2.2792 40 1 12.8229 1.9391 -1.0291 41 1 12.5816 3.3049 0.1029 42 1 10.3944 1.1108 2.0026 43 1 12.0780 0.7846 1.5260 44 1 11.5987 2.4210 2.0367 45 1 2.1849 4.4256 -0.0019 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103278639.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:52 Heat of formation + Delta-G solvation = -52.545008 kcal Electronic energy + Delta-G solvation = -26610.831587 eV Core-core repulsion = 22630.325470 eV Total energy + Delta-G solvation = -3980.506116 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.55645 -40.74106 -39.81785 -39.63658 -36.51731 -36.07423 -34.98177 -32.53746 -32.46309 -31.16695 -28.58167 -28.30032 -27.46848 -26.04351 -24.84891 -23.64347 -23.15638 -21.84027 -21.36769 -20.71948 -19.98021 -18.85843 -18.59548 -18.35548 -17.42054 -17.15016 -16.87401 -16.58079 -16.33986 -16.11388 -15.86894 -15.58677 -15.05793 -14.93010 -14.55476 -14.48881 -14.16156 -13.67061 -13.50729 -13.34982 -13.09510 -12.96223 -12.85849 -12.76549 -12.71988 -12.40498 -12.21418 -12.08292 -11.94695 -11.93966 -11.77882 -11.52536 -11.35549 -11.23598 -10.94367 -10.72841 -10.20660 -9.75657 -8.85818 -7.75914 -5.20354 0.00681 0.86615 0.89353 1.45234 1.47444 1.56228 1.69029 2.08559 2.16503 2.49898 3.31774 3.35166 3.71683 3.73474 3.75986 3.93354 4.08058 4.10335 4.21623 4.25877 4.28576 4.35941 4.42697 4.53124 4.64423 4.65218 4.66979 4.75203 4.80905 4.85133 5.03381 5.04550 5.13225 5.20578 5.29157 5.36238 5.42888 5.47127 5.57087 5.59179 5.78450 5.87410 6.26904 6.33974 6.55662 7.04694 7.13031 7.81161 8.45314 9.25331 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.020583 B = 0.002094 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.997067 B =13369.591821 C =13786.817947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.256 6.256 3 C 0.382 3.618 4 N -0.483 5.483 5 C -0.077 4.077 6 C 0.600 3.400 7 O -0.566 6.566 8 N -0.701 5.701 9 C 0.124 3.876 10 C -0.102 4.102 11 C -0.077 4.077 12 H 0.081 0.919 13 C 0.133 3.867 14 N -0.630 5.630 15 C -0.239 4.239 16 H 0.077 0.923 17 C -0.070 4.070 18 N -0.948 5.948 19 Si 0.980 3.020 20 H -0.287 1.287 21 H -0.291 1.291 22 H -0.270 1.270 23 C 0.160 3.840 24 C -0.102 4.102 25 H 0.069 0.931 26 C -0.127 4.127 27 C 0.029 3.971 28 O -0.215 6.215 29 H 0.076 0.924 30 H 0.145 0.855 31 H 0.077 0.923 32 H 0.417 0.583 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.070 0.930 36 H 0.096 0.904 37 H 0.024 0.976 38 H 0.014 0.986 39 H 0.247 0.753 40 H 0.068 0.932 41 H -0.016 1.016 42 H 0.079 0.921 43 H 0.051 0.949 44 H 0.048 0.952 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.108 -6.474 8.705 32.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.164 6.164 3 C 0.135 3.865 4 N -0.229 5.229 5 C -0.194 4.194 6 C 0.386 3.614 7 O -0.446 6.446 8 N -0.351 5.351 9 C 0.000 4.000 10 C -0.140 4.140 11 C -0.097 4.097 12 H 0.099 0.901 13 C 0.008 3.992 14 N -0.356 5.356 15 C -0.368 4.368 16 H 0.095 0.905 17 C -0.262 4.262 18 N -0.598 5.598 19 Si 0.808 3.192 20 H -0.214 1.214 21 H -0.217 1.217 22 H -0.195 1.195 23 C 0.035 3.965 24 C -0.121 4.121 25 H 0.088 0.912 26 C -0.184 4.184 27 C -0.043 4.043 28 O -0.106 6.106 29 H 0.095 0.905 30 H 0.163 0.837 31 H 0.096 0.904 32 H 0.254 0.746 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.114 0.886 37 H 0.042 0.958 38 H 0.032 0.968 39 H 0.056 0.944 40 H 0.086 0.914 41 H 0.002 0.998 42 H 0.098 0.902 43 H 0.071 0.929 44 H 0.067 0.933 45 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges -29.426 -6.366 8.584 31.306 hybrid contribution 0.277 0.653 -0.970 1.201 sum -29.148 -5.713 7.615 30.663 Atomic orbital electron populations 1.23709 0.72584 1.07785 1.03925 1.86420 1.26162 1.14901 1.88923 1.23459 0.85500 0.80326 0.97175 1.71004 1.11121 1.15949 1.24860 1.21512 0.95826 0.88747 1.13358 1.16862 0.82727 0.85655 0.76126 1.90833 1.87276 1.13922 1.52585 1.45799 1.05169 1.11335 1.72841 1.21414 0.80539 0.95807 1.02209 1.21634 0.91138 0.97224 1.03979 1.22036 0.94212 0.97072 0.96340 0.90073 1.21576 0.85381 0.96786 0.95446 1.44857 1.06520 1.63302 1.20883 1.19453 0.93055 1.27520 0.96810 0.90538 1.25647 0.97185 1.01562 1.01812 1.70069 1.08145 1.45273 1.36307 0.85050 0.77957 0.77107 0.79054 1.21440 1.21727 1.19536 1.21787 0.93911 0.93035 0.87762 1.22477 0.95212 0.97159 0.97291 0.91227 1.21594 1.01854 1.01104 0.93866 1.25577 0.84006 0.94798 0.99955 1.84431 1.39108 1.15551 1.71505 0.90548 0.83681 0.90380 0.74596 0.90950 0.92497 0.91098 0.88575 0.95773 0.96775 0.94368 0.91395 0.99823 0.90208 0.92945 0.93336 0.71790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.05 10.73 113.37 1.22 1.27 16 2 O -0.26 -3.60 10.55 -64.18 -0.68 -4.28 16 3 C 0.38 6.83 8.98 130.43 1.17 8.00 16 4 N -0.48 -10.75 11.10 -419.38 -4.65 -15.41 16 5 C -0.08 -1.66 6.99 40.31 0.28 -1.37 16 6 C 0.60 15.53 7.81 86.65 0.68 16.20 16 7 O -0.57 -17.68 16.89 -4.10 -0.07 -17.75 16 8 N -0.70 -16.54 5.55 -466.42 -2.59 -19.13 16 9 C 0.12 3.13 5.54 86.38 0.48 3.61 16 10 C -0.10 -2.51 4.73 30.59 0.14 -2.36 16 11 C -0.08 -2.54 2.42 -9.61 -0.02 -2.56 16 12 H 0.08 2.57 8.04 -2.39 -0.02 2.55 16 13 C 0.13 5.70 6.10 86.73 0.53 6.22 16 14 N -0.63 -33.91 3.39 -691.99 -2.35 -36.26 16 15 C -0.24 -14.02 10.27 84.03 0.86 -13.15 16 16 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 17 C -0.07 -4.09 5.49 84.86 0.47 -3.63 16 18 N -0.95 -58.08 10.09 21.65 0.22 -57.86 16 19 Si 0.98 47.17 29.55 68.60 2.03 49.19 16 20 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 21 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 22 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 23 C 0.16 8.09 5.36 86.85 0.47 8.56 16 24 C -0.10 -3.72 3.09 -9.40 -0.03 -3.75 16 25 H 0.07 2.54 8.05 -2.39 -0.02 2.52 16 26 C -0.13 -3.69 9.31 71.98 0.67 -3.02 16 27 C 0.03 0.45 11.93 67.28 0.80 1.25 16 28 O -0.22 -3.11 10.20 18.99 0.19 -2.91 16 29 H 0.08 0.19 8.14 -2.39 -0.02 0.17 16 30 H 0.15 -0.20 8.14 -2.39 -0.02 -0.22 16 31 H 0.08 0.17 8.14 -2.39 -0.02 0.15 16 32 H 0.42 8.61 8.20 -92.71 -0.76 7.85 16 33 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.06 1.67 7.58 -2.38 -0.02 1.65 16 35 H 0.07 1.80 8.00 -2.39 -0.02 1.78 16 36 H 0.10 1.90 8.14 -2.38 -0.02 1.88 16 37 H 0.02 1.03 7.73 -2.39 -0.02 1.01 16 38 H 0.01 0.62 8.14 -2.38 -0.02 0.60 16 39 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 40 H 0.07 3.93 5.87 -2.39 -0.01 3.92 16 41 H -0.02 -0.89 7.98 -2.39 -0.02 -0.91 16 42 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.05 1.44 8.07 -2.38 -0.02 1.42 16 45 H 0.27 2.17 8.06 -2.91 -0.02 2.15 16 Total: -1.00 -77.22 376.27 0.06 -77.16 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: 0.24 Total: 11.97 kcal Atomic # 6 Polarization: 7.55 SS G_CDS: 7.71 Total: 15.27 kcal Atomic # 7 Polarization: -119.28 SS G_CDS: -9.37 Total: -128.66 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: -0.55 Total: -24.94 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 2.03 Total: 49.19 kcal Total: -77.22 0.06 -77.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103278639.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.617 kcal (2) G-P(sol) polarization free energy of solvation -77.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds