Wall clock time and date at job start Tue Mar 31 2020 14:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35731 * 116.99815 * 2 1 4 4 C 1.41846 * 126.78788 * 179.71115 * 3 2 1 5 5 C 1.36665 * 103.81612 * 179.85840 * 4 3 2 6 6 C 1.47542 * 126.88265 * 180.13126 * 5 4 3 7 7 O 1.21580 * 120.00019 * 0.29782 * 6 5 4 8 8 N 1.34773 * 119.99946 * 180.30381 * 6 5 4 9 9 C 1.47493 * 127.03440 * 0.02562 * 8 6 5 10 10 C 1.54003 * 107.08227 * 154.52131 * 9 8 6 11 11 H 1.08995 * 110.32966 * 120.19838 * 10 9 8 12 12 C 1.53002 * 110.32811 * 242.31476 * 10 9 8 13 13 C 1.54615 * 105.04452 * 1.30719 * 10 9 8 14 14 H 1.09004 * 110.74065 * 263.51270 * 13 10 9 15 15 C 1.53005 * 110.74127 * 140.18781 * 13 10 9 16 16 C 1.52996 * 109.47432 * 174.99632 * 15 13 10 17 17 N 1.46502 * 109.47175 * 179.97438 * 16 15 13 18 18 C 1.36934 * 120.00020 * 180.02562 * 17 16 15 19 19 H 1.07999 * 119.99791 * 359.97438 * 18 17 16 20 20 C 1.38813 * 120.00294 * 180.02562 * 18 17 16 21 21 N 1.31623 * 119.99618 * 359.97438 * 20 18 17 22 22 Si 1.86790 * 120.00259 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47161 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47366 * 119.99959 * 22 20 18 25 25 H 1.48506 * 109.47353 * 239.99830 * 22 20 18 26 26 C 1.48123 * 127.03394 * 179.70880 * 8 6 5 27 27 O 1.34663 * 106.23720 * 0.39962 * 5 4 3 28 28 N 1.20871 * 111.63200 * 359.72940 * 27 5 4 29 29 H 1.09002 * 109.47382 * 59.99869 * 1 2 3 30 30 H 1.09001 * 109.46938 * 299.99855 * 1 2 3 31 31 H 1.09004 * 109.46926 * 179.97438 * 1 2 3 32 32 H 1.08009 * 128.09366 * 0.02562 * 4 3 2 33 33 H 1.08995 * 109.91333 * 273.88005 * 9 8 6 34 34 H 1.08996 * 109.90981 * 35.16225 * 9 8 6 35 35 H 1.09000 * 109.47035 * 58.54105 * 12 10 9 36 36 H 1.08999 * 109.47650 * 178.54608 * 12 10 9 37 37 H 1.09003 * 109.46606 * 298.54703 * 12 10 9 38 38 H 1.08995 * 109.46776 * 295.00266 * 15 13 10 39 39 H 1.09007 * 109.46780 * 54.99727 * 15 13 10 40 40 H 1.08996 * 109.47227 * 300.00411 * 16 15 13 41 41 H 1.09008 * 109.46633 * 59.99945 * 16 15 13 42 42 H 0.96994 * 119.99573 * 0.02562 * 17 16 15 43 43 H 0.96996 * 119.99785 * 180.02562 * 21 20 18 44 44 H 1.08994 * 110.65761 * 337.76340 * 26 8 6 45 45 H 1.09000 * 110.66074 * 100.88278 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 3.4430 1.4506 0.0057 5 6 3.5390 2.8138 -0.0002 6 6 4.7784 3.6143 -0.0006 7 8 5.8603 3.0596 -0.0007 8 7 4.7112 4.9604 -0.0008 9 6 3.4910 5.7889 0.0000 10 6 3.8638 7.1425 0.6328 11 1 3.6852 7.9529 -0.0739 12 6 3.0597 7.3694 1.9146 13 6 5.3721 7.0333 0.9547 14 1 5.5250 6.7455 1.9948 15 6 6.0891 8.3488 0.6440 16 6 7.5499 8.2507 1.0880 17 7 8.2365 9.5101 0.7900 18 6 9.5620 9.6574 1.1006 19 1 10.1011 8.8453 1.5657 20 6 10.2125 10.8508 0.8187 21 7 9.5553 11.8407 0.2523 22 14 12.0204 11.0520 1.2430 23 1 12.5242 9.8027 1.8681 24 1 12.7913 11.3325 0.0051 25 1 12.1831 12.1811 2.1939 26 6 5.8477 5.9103 0.0049 27 8 2.2757 3.2803 0.0004 28 7 1.4685 2.3806 0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 4.2442 0.7262 0.0106 33 1 3.1442 5.9400 -1.0222 34 1 2.7137 5.3044 0.5908 35 1 3.2573 6.5586 2.6157 36 1 3.3526 8.3182 2.3642 37 1 1.9962 7.3931 1.6768 38 1 6.0473 8.5409 -0.4281 39 1 5.6008 9.1637 1.1785 40 1 7.5917 8.0586 2.1601 41 1 8.0381 7.4357 0.5536 42 1 7.7522 10.2395 0.3726 43 1 10.0099 12.6745 0.0550 44 1 6.7463 5.4325 0.3951 45 1 6.0242 6.3048 -0.9958 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104100518.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:40 Heat of formation + Delta-G solvation = 7.911742 kcal Electronic energy + Delta-G solvation = -26977.345217 eV Core-core repulsion = 22999.460702 eV Total energy + Delta-G solvation = -3977.884515 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.38747 -40.38175 -39.32537 -38.32295 -35.20783 -33.69545 -33.44072 -32.17557 -32.07876 -30.20070 -28.16237 -27.45529 -26.68316 -24.84867 -23.79056 -23.32886 -22.35825 -20.97309 -20.58651 -20.13901 -18.52567 -18.36696 -17.31796 -17.11092 -16.43741 -16.33920 -16.06550 -15.75805 -15.23704 -14.73393 -14.65184 -14.41480 -14.07680 -13.80059 -13.44894 -13.28261 -13.15779 -13.05731 -12.72363 -12.50580 -12.38136 -12.24864 -11.90434 -11.71898 -11.40415 -11.23082 -11.02172 -10.83844 -10.63220 -10.57444 -10.43663 -10.29808 -10.27327 -9.94883 -9.78688 -9.66138 -8.99294 -8.85551 -6.90042 -5.75059 -3.03400 0.37080 1.67102 2.12987 2.19149 2.65873 2.86795 3.45020 3.50940 3.53082 3.63908 4.15243 4.34034 4.35046 4.55083 4.58710 4.64725 4.65474 4.67818 4.77002 4.97994 5.03308 5.21484 5.25326 5.33768 5.35646 5.44518 5.53830 5.59700 5.70200 5.74672 5.77209 5.83754 6.00367 6.02341 6.12186 6.26790 6.37195 6.40524 6.44024 6.84956 6.88587 7.08159 7.48913 7.71710 7.73029 8.44288 9.55401 10.13666 10.47945 11.48008 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.029778 B = 0.002122 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.051658 B =13192.458063 C =13904.929011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.281 6.281 3 C 0.206 3.794 4 C -0.155 4.155 5 C -0.050 4.050 6 C 0.619 3.381 7 O -0.508 6.508 8 N -0.606 5.606 9 C 0.097 3.903 10 C -0.102 4.102 11 H 0.092 0.908 12 C -0.143 4.143 13 C -0.092 4.092 14 H 0.086 0.914 15 C -0.114 4.114 16 C 0.151 3.849 17 N -0.734 5.734 18 C -0.238 4.238 19 H 0.071 0.929 20 C -0.016 4.016 21 N -0.934 5.934 22 Si 0.907 3.093 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.292 1.292 26 C 0.110 3.890 27 O 0.118 5.882 28 N -0.392 5.392 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.108 0.892 32 H 0.191 0.809 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.055 0.945 36 H 0.064 0.936 37 H 0.057 0.943 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.018 0.982 41 H 0.019 0.981 42 H 0.383 0.617 43 H 0.254 0.746 44 H 0.092 0.908 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.089 -19.950 -0.678 29.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.187 6.187 3 C 0.008 3.992 4 C -0.178 4.178 5 C -0.116 4.116 6 C 0.404 3.596 7 O -0.383 6.383 8 N -0.338 5.338 9 C -0.026 4.026 10 C -0.121 4.121 11 H 0.110 0.890 12 C -0.201 4.201 13 C -0.112 4.112 14 H 0.104 0.896 15 C -0.153 4.153 16 C 0.023 3.977 17 N -0.378 5.378 18 C -0.369 4.369 19 H 0.089 0.911 20 C -0.212 4.212 21 N -0.583 5.583 22 Si 0.738 3.262 23 H -0.205 1.205 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.011 4.011 27 O 0.052 5.948 28 N -0.116 5.116 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.126 0.874 32 H 0.209 0.791 33 H 0.094 0.906 34 H 0.101 0.899 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.036 0.964 41 H 0.037 0.963 42 H 0.217 0.783 43 H 0.064 0.936 44 H 0.111 0.889 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -22.485 -20.303 -0.622 30.301 hybrid contribution 1.119 -0.002 0.041 1.120 sum -21.366 -20.305 -0.581 29.481 Atomic orbital electron populations 1.23121 0.76442 1.04384 1.02516 1.86231 1.22861 1.20308 1.89291 1.21875 0.90604 0.85853 1.00829 1.22188 0.94525 0.94888 1.06152 1.24022 0.86937 0.93701 1.06925 1.15993 0.85148 0.80380 0.78067 1.90918 1.26512 1.70256 1.50642 1.48680 1.10512 1.03872 1.70734 1.22480 0.86968 0.91352 1.01755 1.22170 0.95497 0.96104 0.98309 0.88977 1.21849 0.99390 1.02389 0.96448 1.22315 0.93429 0.95418 0.99994 0.89559 1.21727 0.96676 0.95030 1.01829 1.20690 0.89716 0.90230 0.97050 1.42367 1.09034 1.12401 1.74020 1.19294 0.86545 0.98287 1.32759 0.91121 1.24744 0.98243 0.96411 1.01757 1.69670 1.35526 1.04690 1.48432 0.86117 0.85117 0.77463 0.77518 1.20539 1.21876 1.21901 1.22740 0.89275 0.88327 1.00785 1.85028 1.11849 1.29435 1.68461 1.73990 1.16046 0.96758 1.24808 0.92066 0.92055 0.87394 0.79149 0.90637 0.89854 0.92607 0.91700 0.92440 0.91483 0.91219 0.96427 0.96288 0.78330 0.93611 0.88908 0.89774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.73 101.05 1.08 1.25 16 2 O -0.28 -2.53 10.57 -18.90 -0.20 -2.73 16 3 C 0.21 2.09 8.00 -16.72 -0.13 1.95 16 4 C -0.15 -1.54 10.97 -38.77 -0.43 -1.96 16 5 C -0.05 -0.53 7.08 -36.36 -0.26 -0.79 16 6 C 0.62 7.64 7.89 -12.47 -0.10 7.54 16 7 O -0.51 -7.79 17.12 5.29 0.09 -7.70 16 8 N -0.61 -6.71 3.29 -171.21 -0.56 -7.28 16 9 C 0.10 0.85 5.99 -2.98 -0.02 0.83 16 10 C -0.10 -0.91 3.17 -89.25 -0.28 -1.19 16 11 H 0.09 0.78 7.85 -51.93 -0.41 0.37 16 12 C -0.14 -1.17 8.90 37.16 0.33 -0.84 16 13 C -0.09 -1.04 2.58 -88.94 -0.23 -1.27 16 14 H 0.09 1.02 7.86 -51.93 -0.41 0.61 16 15 C -0.11 -1.64 4.70 -26.73 -0.13 -1.77 16 16 C 0.15 2.91 6.15 -4.04 -0.02 2.88 16 17 N -0.73 -18.46 5.60 -59.91 -0.34 -18.80 16 18 C -0.24 -6.69 9.99 -15.06 -0.15 -6.85 16 19 H 0.07 1.95 7.83 -52.49 -0.41 1.53 16 20 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 21 N -0.93 -28.28 13.06 55.49 0.72 -27.56 16 22 Si 0.91 22.56 29.55 -169.99 -5.02 17.53 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 24 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 25 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 26 C 0.11 1.30 5.92 -2.32 -0.01 1.29 16 27 O 0.12 1.20 8.66 15.50 0.13 1.33 16 28 N -0.39 -4.12 11.50 30.47 0.35 -3.77 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.11 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.19 1.59 8.06 -52.48 -0.42 1.17 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 0.68 5.82 -51.93 -0.30 0.37 16 35 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.07 0.96 7.99 -51.93 -0.41 0.54 16 39 H 0.07 1.01 8.14 -51.92 -0.42 0.59 16 40 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.02 0.37 7.67 -51.92 -0.40 -0.02 16 42 H 0.38 10.05 7.67 -40.82 -0.31 9.74 16 43 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 44 H 0.09 1.23 7.83 -51.93 -0.41 0.83 16 45 H 0.08 0.98 7.93 -51.93 -0.41 0.57 16 LS Contribution 376.33 15.07 5.67 5.67 Total: -1.00 -33.12 376.33 -6.43 -39.54 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -6.84 Total: 3.22 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: -0.44 Total: 0.54 kcal Atomic # 7 Polarization: -57.58 SS G_CDS: 0.18 Total: -57.40 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.03 Total: -9.10 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.12 -6.43 -39.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104100518.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.456 kcal (2) G-P(sol) polarization free energy of solvation -33.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds