Wall clock time and date at job start Tue Mar 31 2020 14:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 110.29223 * 2 1 4 4 C 1.54008 * 110.32359 * 237.86650 * 2 1 3 5 5 N 1.47487 * 107.08465 * 242.30781 * 4 2 1 6 6 C 1.34773 * 127.03110 * 154.51712 * 5 4 2 7 7 O 1.21499 * 120.00006 * 180.02562 * 6 5 4 8 8 C 1.48199 * 120.00536 * 0.02683 * 6 5 4 9 9 C 1.36311 * 126.39152 * 179.97438 * 8 6 5 10 10 C 1.42345 * 104.01162 * 179.97438 * 9 8 6 11 11 O 1.21980 * 127.14440 * 179.97438 * 10 9 8 12 12 N 1.34825 * 105.70295 * 359.97438 * 10 9 8 13 13 C 1.46498 * 124.56721 * 180.02562 * 12 10 9 14 14 O 1.20926 * 110.86630 * 0.02562 * 12 10 9 15 15 C 1.48121 * 105.93293 * 334.78305 * 5 4 2 16 16 C 1.54597 * 103.42293 * 39.02047 * 15 5 4 17 17 H 1.09005 * 110.73145 * 81.24092 * 16 15 5 18 18 C 1.52998 * 110.83620 * 204.44392 * 16 15 5 19 19 C 1.52994 * 109.47308 * 288.56698 * 18 16 15 20 20 N 1.46499 * 109.47366 * 179.97438 * 19 18 16 21 21 C 1.36936 * 120.00233 * 180.02562 * 20 19 18 22 22 H 1.07998 * 119.99818 * 359.97438 * 21 20 19 23 23 C 1.38813 * 119.99905 * 179.97438 * 21 20 19 24 24 N 1.31617 * 120.00079 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99815 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47402 * 60.00085 * 25 23 21 27 27 H 1.48503 * 109.47292 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.47043 * 299.99888 * 25 23 21 29 29 H 1.09003 * 109.47296 * 180.67890 * 1 2 3 30 30 H 1.08999 * 109.47231 * 300.68116 * 1 2 3 31 31 H 1.08997 * 109.47404 * 60.67969 * 1 2 3 32 32 H 1.09001 * 109.90950 * 122.95287 * 4 2 1 33 33 H 1.08999 * 110.07487 * 1.76486 * 4 2 1 34 34 H 1.08005 * 127.99517 * 0.23747 * 9 8 6 35 35 H 1.09001 * 109.47241 * 89.99896 * 13 12 10 36 36 H 1.09001 * 109.47381 * 210.00011 * 13 12 10 37 37 H 1.08997 * 109.47125 * 329.99876 * 13 12 10 38 38 H 1.08999 * 110.66007 * 157.50104 * 15 5 4 39 39 H 1.09000 * 110.66277 * 280.62325 * 15 5 4 40 40 H 1.09003 * 109.46588 * 48.56608 * 18 16 15 41 41 H 1.08999 * 109.47101 * 168.55957 * 18 16 15 42 42 H 1.09003 * 109.46709 * 299.99636 * 19 18 16 43 43 H 1.08996 * 109.47182 * 59.99381 * 19 18 16 44 44 H 0.96998 * 119.99785 * 359.97438 * 20 19 18 45 45 H 0.97004 * 119.99872 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0223 0.0000 4 6 2.0649 -0.7682 -1.2230 5 7 2.8297 -1.9203 -0.7104 6 6 3.0644 -3.0859 -1.3450 7 8 3.7151 -3.9546 -0.7990 8 6 2.5288 -3.3081 -2.7089 9 6 2.6866 -4.4299 -3.4669 10 6 1.9881 -4.1333 -4.6712 11 8 1.8621 -4.8549 -5.6465 12 7 1.4948 -2.8889 -4.5098 13 6 0.6994 -2.1738 -5.5109 14 8 1.7974 -2.4426 -3.4274 15 6 3.2816 -1.5369 0.6471 16 6 2.0693 -0.7721 1.2262 17 1 1.3198 -1.4670 1.6050 18 6 2.5113 0.1966 2.3249 19 6 2.9218 -0.5951 3.5681 20 7 3.3456 0.3323 4.6199 21 6 3.7603 -0.1506 5.8323 22 1 3.7745 -1.2152 6.0133 23 6 4.1623 0.7283 6.8287 24 7 4.1454 2.0257 6.6080 25 14 4.7274 0.0696 8.4829 26 1 5.9046 -0.8144 8.2878 27 1 5.1003 1.2036 9.3662 28 1 3.6259 -0.7042 9.1100 29 1 -0.3634 -1.0276 0.0122 30 1 -0.3633 0.5244 0.8838 31 1 -0.3634 0.5032 -0.8960 32 1 2.7166 -0.1221 -1.8112 33 1 1.2352 -1.1171 -1.8378 34 1 3.2153 -5.3363 -3.2110 35 1 -0.3578 -2.3896 -5.3567 36 1 0.8696 -1.1017 -5.4121 37 1 0.9947 -2.4980 -6.5088 38 1 3.4980 -2.4224 1.2448 39 1 4.1541 -0.8858 0.5924 40 1 3.3590 0.7839 1.9719 41 1 1.6862 0.8635 2.5748 42 1 2.0740 -1.1825 3.9210 43 1 3.7469 -1.2620 3.3181 44 1 3.3331 1.2885 4.4573 45 1 4.4260 2.6399 7.3045 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104123591.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:43 Heat of formation + Delta-G solvation = 23.802359 kcal Electronic energy + Delta-G solvation = -27285.201321 eV Core-core repulsion = 23308.005875 eV Total energy + Delta-G solvation = -3977.195446 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.49798 -40.53499 -38.53223 -38.46404 -35.28005 -34.72874 -33.44620 -32.62666 -32.17393 -30.39679 -28.80432 -27.16731 -26.81236 -24.80888 -23.93758 -23.27430 -22.36919 -20.83982 -20.25180 -20.17949 -18.81668 -18.54909 -17.56922 -17.15348 -16.53601 -16.05459 -15.62376 -15.35648 -14.84609 -14.71364 -14.57984 -14.19977 -14.09814 -13.92240 -13.79107 -13.53988 -13.38146 -13.34547 -13.21522 -13.14263 -12.59750 -12.38219 -11.84310 -11.50697 -11.31849 -11.08296 -10.87708 -10.84153 -10.69315 -10.54188 -10.45623 -10.41343 -10.37925 -10.03009 -9.68807 -9.14878 -8.92314 -8.87650 -6.93685 -5.77692 -3.06371 0.14621 1.15198 2.18750 2.23615 2.62172 2.88140 3.44191 3.48438 3.49473 3.89664 4.21918 4.24917 4.40494 4.53423 4.57548 4.58863 4.61063 4.66064 4.88894 4.90240 5.10730 5.18020 5.22951 5.32642 5.40564 5.43208 5.46324 5.54583 5.61817 5.63809 5.67248 5.74223 5.89955 5.94024 6.03588 6.19615 6.32288 6.32433 6.79510 6.83023 6.92828 7.16063 7.43549 7.57932 7.69204 8.41559 9.52573 10.10305 10.44527 11.45178 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.027524 B = 0.002248 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.054535 B =12450.065278 C =13238.684984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.102 4.102 3 H 0.093 0.907 4 C 0.099 3.901 5 N -0.606 5.606 6 C 0.616 3.384 7 O -0.495 6.495 8 C 0.038 3.962 9 C -0.237 4.237 10 C 0.481 3.519 11 O -0.523 6.523 12 N -0.455 5.455 13 C 0.107 3.893 14 O -0.002 6.002 15 C 0.109 3.891 16 C -0.092 4.092 17 H 0.087 0.913 18 C -0.115 4.115 19 C 0.151 3.849 20 N -0.734 5.734 21 C -0.240 4.240 22 H 0.070 0.930 23 C -0.015 4.015 24 N -0.935 5.935 25 Si 0.908 3.092 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.194 0.806 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.105 0.895 38 H 0.094 0.906 39 H 0.086 0.914 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.018 0.982 43 H 0.019 0.981 44 H 0.383 0.617 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.935 -3.814 -24.853 26.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.121 4.121 3 H 0.111 0.889 4 C -0.024 4.024 5 N -0.338 5.338 6 C 0.400 3.600 7 O -0.369 6.369 8 C -0.020 4.020 9 C -0.262 4.262 10 C 0.280 3.720 11 O -0.403 6.403 12 N -0.219 5.219 13 C -0.030 4.030 14 O -0.013 6.013 15 C -0.012 4.012 16 C -0.111 4.111 17 H 0.105 0.895 18 C -0.153 4.153 19 C 0.023 3.977 20 N -0.378 5.378 21 C -0.371 4.371 22 H 0.088 0.912 23 C -0.211 4.211 24 N -0.583 5.583 25 Si 0.739 3.261 26 H -0.212 1.212 27 H -0.217 1.217 28 H -0.213 1.213 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.211 0.789 35 H 0.100 0.900 36 H 0.112 0.888 37 H 0.124 0.876 38 H 0.112 0.888 39 H 0.104 0.896 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.036 0.964 43 H 0.037 0.963 44 H 0.217 0.783 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.768 -4.545 -25.085 26.959 hybrid contribution 0.312 0.052 0.881 0.936 sum -8.456 -4.493 -24.204 26.030 Atomic orbital electron populations 1.21846 0.93857 1.02059 1.02295 1.22174 0.96653 0.99924 0.93332 0.88909 1.22465 0.95736 0.87053 0.97158 1.48736 1.52381 1.14045 1.18649 1.16239 0.80667 0.81845 0.81245 1.90929 1.39377 1.42770 1.63867 1.23386 0.94808 0.90137 0.93644 1.23351 1.07191 1.01176 0.94501 1.18334 0.82591 0.81181 0.89942 1.90976 1.63110 1.51654 1.34585 1.46108 1.51239 1.17334 1.07215 1.22148 0.94504 0.97726 0.88615 1.84113 1.62271 1.37832 1.17087 1.22775 0.97525 1.00549 0.80307 1.22322 0.96782 0.97468 0.94576 0.89485 1.21732 1.01452 0.97591 0.94516 1.20683 0.96446 0.92834 0.87704 1.42349 1.79093 1.05128 1.11247 1.19193 1.35791 0.92124 0.89992 0.91233 1.24745 1.02414 0.95334 0.98563 1.69647 1.54212 1.00704 1.33782 0.86259 0.78588 0.77435 0.83865 1.21223 1.21688 1.21263 0.92594 0.91583 0.92543 0.90716 0.90085 0.78890 0.90016 0.88765 0.87632 0.88764 0.89628 0.91473 0.91183 0.96426 0.96308 0.78327 0.93477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 8.90 37.16 0.33 -0.68 16 2 C -0.10 -0.80 3.17 -89.24 -0.28 -1.08 16 3 H 0.09 0.69 7.85 -51.93 -0.41 0.29 16 4 C 0.10 0.73 5.98 -2.98 -0.02 0.71 16 5 N -0.61 -6.12 3.29 -170.95 -0.56 -6.68 16 6 C 0.62 7.09 7.91 -12.17 -0.10 7.00 16 7 O -0.49 -7.27 17.10 5.37 0.09 -7.17 16 8 C 0.04 0.38 7.06 -36.18 -0.26 0.12 16 9 C -0.24 -2.47 10.94 -38.70 -0.42 -2.89 16 10 C 0.48 5.43 8.02 -14.66 -0.12 5.31 16 11 O -0.52 -7.53 17.84 4.94 0.09 -7.44 16 12 N -0.45 -3.74 3.68 -69.77 -0.26 -4.00 16 13 C 0.11 0.42 11.22 59.85 0.67 1.09 16 14 O 0.00 -0.02 8.30 16.82 0.14 0.12 16 15 C 0.11 1.21 5.92 -2.31 -0.01 1.19 16 16 C -0.09 -0.96 2.58 -88.93 -0.23 -1.19 16 17 H 0.09 0.96 7.86 -51.93 -0.41 0.55 16 18 C -0.11 -1.57 4.70 -26.74 -0.13 -1.70 16 19 C 0.15 2.84 6.15 -4.05 -0.02 2.81 16 20 N -0.73 -18.18 5.60 -59.91 -0.34 -18.51 16 21 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 22 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 23 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 24 N -0.93 -28.02 13.06 55.49 0.72 -27.29 16 25 Si 0.91 22.35 29.55 -169.99 -5.02 17.32 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 27 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 28 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.53 5.80 -51.93 -0.30 0.23 16 34 H 0.19 1.82 8.06 -52.48 -0.42 1.39 16 35 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 36 H 0.09 0.15 8.14 -51.93 -0.42 -0.28 16 37 H 0.11 0.40 8.03 -51.93 -0.42 -0.02 16 38 H 0.09 1.18 7.83 -51.93 -0.41 0.78 16 39 H 0.09 0.93 7.93 -51.93 -0.41 0.52 16 40 H 0.07 0.92 7.99 -51.93 -0.41 0.50 16 41 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.02 0.36 7.67 -51.93 -0.40 -0.04 16 44 H 0.38 9.89 7.67 -40.82 -0.31 9.58 16 45 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 375.76 15.07 5.66 5.66 Total: -1.00 -35.01 375.76 -7.13 -42.15 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -6.83 Total: 2.50 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: -0.83 Total: 3.34 kcal Atomic # 7 Polarization: -56.05 SS G_CDS: -0.43 Total: -56.48 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: 0.32 Total: -14.49 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.01 -7.13 -42.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104123591.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.947 kcal (2) G-P(sol) polarization free energy of solvation -35.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds