Wall clock time and date at job start Tue Mar 31 2020 14:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 110.29223 * 2 1 4 4 C 1.54008 * 110.32359 * 237.86650 * 2 1 3 5 5 N 1.47487 * 107.08465 * 242.30781 * 4 2 1 6 6 C 1.34773 * 127.03110 * 154.51712 * 5 4 2 7 7 O 1.21499 * 120.00006 * 180.02562 * 6 5 4 8 8 C 1.48199 * 120.00536 * 0.02683 * 6 5 4 9 9 C 1.36311 * 126.39152 * 179.97438 * 8 6 5 10 10 C 1.42345 * 104.01162 * 179.97438 * 9 8 6 11 11 O 1.21980 * 127.14440 * 179.97438 * 10 9 8 12 12 N 1.34825 * 105.70295 * 359.97438 * 10 9 8 13 13 C 1.46498 * 124.56721 * 180.02562 * 12 10 9 14 14 O 1.20926 * 110.86630 * 0.02562 * 12 10 9 15 15 C 1.48121 * 105.93293 * 334.78305 * 5 4 2 16 16 C 1.54597 * 103.42293 * 39.02047 * 15 5 4 17 17 H 1.09005 * 110.73145 * 81.24092 * 16 15 5 18 18 C 1.52998 * 110.83620 * 204.44392 * 16 15 5 19 19 C 1.52994 * 109.47308 * 288.56698 * 18 16 15 20 20 N 1.46499 * 109.47366 * 179.97438 * 19 18 16 21 21 C 1.36936 * 120.00233 * 180.02562 * 20 19 18 22 22 H 1.07998 * 119.99818 * 359.97438 * 21 20 19 23 23 C 1.38813 * 119.99905 * 179.97438 * 21 20 19 24 24 N 1.31617 * 120.00079 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99815 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47402 * 60.00085 * 25 23 21 27 27 H 1.48503 * 109.47292 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.47043 * 299.99888 * 25 23 21 29 29 H 1.09003 * 109.47296 * 180.67890 * 1 2 3 30 30 H 1.08999 * 109.47231 * 300.68116 * 1 2 3 31 31 H 1.08997 * 109.47404 * 60.67969 * 1 2 3 32 32 H 1.09001 * 109.90950 * 122.95287 * 4 2 1 33 33 H 1.08999 * 110.07487 * 1.76486 * 4 2 1 34 34 H 1.08005 * 127.99517 * 0.23747 * 9 8 6 35 35 H 1.09001 * 109.47241 * 89.99896 * 13 12 10 36 36 H 1.09001 * 109.47381 * 210.00011 * 13 12 10 37 37 H 1.08997 * 109.47125 * 329.99876 * 13 12 10 38 38 H 1.08999 * 110.66007 * 157.50104 * 15 5 4 39 39 H 1.09000 * 110.66277 * 280.62325 * 15 5 4 40 40 H 1.09003 * 109.46588 * 48.56608 * 18 16 15 41 41 H 1.08999 * 109.47101 * 168.55957 * 18 16 15 42 42 H 1.09003 * 109.46709 * 299.99636 * 19 18 16 43 43 H 1.08996 * 109.47182 * 59.99381 * 19 18 16 44 44 H 0.96998 * 119.99785 * 359.97438 * 20 19 18 45 45 H 0.97004 * 119.99872 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0223 0.0000 4 6 2.0649 -0.7682 -1.2230 5 7 2.8297 -1.9203 -0.7104 6 6 3.0644 -3.0859 -1.3450 7 8 3.7151 -3.9546 -0.7990 8 6 2.5288 -3.3081 -2.7089 9 6 2.6866 -4.4299 -3.4669 10 6 1.9881 -4.1333 -4.6712 11 8 1.8621 -4.8549 -5.6465 12 7 1.4948 -2.8889 -4.5098 13 6 0.6994 -2.1738 -5.5109 14 8 1.7974 -2.4426 -3.4274 15 6 3.2816 -1.5369 0.6471 16 6 2.0693 -0.7721 1.2262 17 1 1.3198 -1.4670 1.6050 18 6 2.5113 0.1966 2.3249 19 6 2.9218 -0.5951 3.5681 20 7 3.3456 0.3323 4.6199 21 6 3.7603 -0.1506 5.8323 22 1 3.7745 -1.2152 6.0133 23 6 4.1623 0.7283 6.8287 24 7 4.1454 2.0257 6.6080 25 14 4.7274 0.0696 8.4829 26 1 5.9046 -0.8144 8.2878 27 1 5.1003 1.2036 9.3662 28 1 3.6259 -0.7042 9.1100 29 1 -0.3634 -1.0276 0.0122 30 1 -0.3633 0.5244 0.8838 31 1 -0.3634 0.5032 -0.8960 32 1 2.7166 -0.1221 -1.8112 33 1 1.2352 -1.1171 -1.8378 34 1 3.2153 -5.3363 -3.2110 35 1 -0.3578 -2.3896 -5.3567 36 1 0.8696 -1.1017 -5.4121 37 1 0.9947 -2.4980 -6.5088 38 1 3.4980 -2.4224 1.2448 39 1 4.1541 -0.8858 0.5924 40 1 3.3590 0.7839 1.9719 41 1 1.6862 0.8635 2.5748 42 1 2.0740 -1.1825 3.9210 43 1 3.7469 -1.2620 3.3181 44 1 3.3331 1.2885 4.4573 45 1 4.4260 2.6399 7.3045 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104123591.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:42 Heat of formation + Delta-G solvation = 0.120911 kcal Electronic energy + Delta-G solvation = -27286.228226 eV Core-core repulsion = 23308.005875 eV Total energy + Delta-G solvation = -3978.222350 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -46.26548 -41.40360 -39.42308 -39.36774 -36.88828 -35.47016 -34.64010 -33.50615 -33.40927 -31.85030 -29.67667 -28.23010 -27.48283 -26.13887 -24.82396 -24.50050 -23.53867 -22.02262 -21.08629 -21.00797 -19.54892 -19.29715 -19.11795 -18.33024 -17.48562 -16.92421 -16.65555 -16.41321 -16.22674 -15.83824 -15.52584 -15.26920 -15.10306 -15.03632 -14.88173 -14.59593 -14.33559 -14.24216 -14.08266 -13.66919 -13.56149 -13.24183 -13.08046 -12.84858 -12.67554 -12.43915 -12.28091 -12.16359 -11.92074 -11.79503 -11.58917 -11.50345 -11.35322 -11.26594 -11.15316 -10.89921 -9.96941 -9.69703 -8.98206 -7.94857 -5.23033 -0.67374 0.46763 1.32314 1.41573 1.47975 1.50500 1.56640 1.76099 2.08630 2.56711 3.11704 3.38725 3.49222 3.50282 3.63847 3.75622 3.81888 4.10023 4.21390 4.26067 4.30642 4.35201 4.48579 4.50124 4.56965 4.61178 4.65370 4.66127 4.68759 4.79934 4.82486 4.85708 4.92449 4.97213 5.08953 5.18152 5.31156 5.39962 5.44168 5.50997 5.55363 6.09994 6.28533 6.35592 6.57239 6.80810 7.34752 8.12020 8.34648 9.28313 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.027524 B = 0.002248 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.054535 B =12450.065278 C =13238.684984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.093 4.093 3 H 0.104 0.896 4 C 0.097 3.903 5 N -0.601 5.601 6 C 0.617 3.383 7 O -0.535 6.535 8 C 0.045 3.955 9 C -0.247 4.247 10 C 0.470 3.530 11 O -0.565 6.565 12 N -0.443 5.443 13 C 0.093 3.907 14 O 0.020 5.980 15 C 0.108 3.892 16 C -0.084 4.084 17 H 0.083 0.917 18 C -0.099 4.099 19 C 0.147 3.853 20 N -0.747 5.747 21 C -0.248 4.248 22 H 0.072 0.928 23 C -0.075 4.075 24 N -0.968 5.968 25 Si 0.971 3.029 26 H -0.279 1.279 27 H -0.294 1.294 28 H -0.278 1.278 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.078 0.922 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.195 0.805 35 H 0.099 0.901 36 H 0.126 0.874 37 H 0.106 0.894 38 H 0.073 0.927 39 H 0.090 0.910 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.015 0.985 43 H 0.018 0.982 44 H 0.375 0.625 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.007 -2.879 -26.049 28.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.112 4.112 3 H 0.123 0.877 4 C -0.024 4.024 5 N -0.332 5.332 6 C 0.402 3.598 7 O -0.413 6.413 8 C -0.015 4.015 9 C -0.272 4.272 10 C 0.269 3.731 11 O -0.449 6.449 12 N -0.204 5.204 13 C -0.041 4.041 14 O 0.008 5.992 15 C -0.014 4.014 16 C -0.103 4.103 17 H 0.101 0.899 18 C -0.137 4.137 19 C 0.021 3.979 20 N -0.390 5.390 21 C -0.379 4.379 22 H 0.090 0.910 23 C -0.267 4.267 24 N -0.618 5.618 25 Si 0.800 3.200 26 H -0.205 1.205 27 H -0.220 1.220 28 H -0.205 1.205 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.097 0.903 32 H 0.114 0.886 33 H 0.115 0.885 34 H 0.212 0.788 35 H 0.118 0.882 36 H 0.145 0.855 37 H 0.124 0.876 38 H 0.092 0.908 39 H 0.108 0.892 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.033 0.967 43 H 0.036 0.964 44 H 0.207 0.793 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -9.891 -3.582 -26.321 28.345 hybrid contribution 0.593 -0.195 1.227 1.376 sum -9.298 -3.778 -25.094 27.027 Atomic orbital electron populations 1.21843 0.92932 1.02069 1.03052 1.22146 0.97331 1.00049 0.91686 0.87742 1.22695 0.96344 0.86190 0.97190 1.48765 1.51963 1.14293 1.18175 1.16309 0.80278 0.81679 0.81542 1.90909 1.41274 1.44126 1.64965 1.22953 0.95193 0.90197 0.93113 1.23434 1.07476 1.01689 0.94599 1.18402 0.83090 0.81981 0.89637 1.90948 1.65026 1.53034 1.35899 1.46414 1.50019 1.16691 1.07253 1.22631 0.94811 0.99215 0.87422 1.84127 1.61268 1.36900 1.16865 1.22709 0.98022 0.99839 0.80807 1.22170 0.96449 0.96960 0.94760 0.89910 1.21554 1.01539 0.97524 0.93069 1.20883 0.95990 0.92626 0.88414 1.42581 1.79100 1.05566 1.11765 1.19584 1.34781 0.92327 0.91253 0.91027 1.25544 1.03424 0.95676 1.02093 1.69791 1.55683 1.01724 1.34624 0.85246 0.78304 0.76736 0.79694 1.20539 1.21964 1.20461 0.92929 0.92394 0.90323 0.88595 0.88550 0.78770 0.88223 0.85531 0.87556 0.90820 0.89202 0.91157 0.91036 0.96732 0.96423 0.79270 0.93943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 8.90 71.98 0.64 -0.90 16 2 C -0.09 -1.17 3.17 -9.90 -0.03 -1.20 16 3 H 0.10 1.16 7.85 -2.39 -0.02 1.14 16 4 C 0.10 1.10 5.98 86.53 0.52 1.61 16 5 N -0.60 -11.06 3.29 -813.08 -2.68 -13.74 16 6 C 0.62 13.66 7.91 86.89 0.69 14.34 16 7 O -0.53 -15.91 17.10 -3.71 -0.06 -15.98 16 8 C 0.04 0.82 7.06 24.47 0.17 0.99 16 9 C -0.25 -5.07 10.94 22.84 0.25 -4.82 16 10 C 0.47 10.27 8.02 85.26 0.68 10.96 16 11 O -0.56 -16.38 17.84 -5.25 -0.09 -16.47 16 12 N -0.44 -6.24 3.68 -492.74 -1.82 -8.05 16 13 C 0.09 0.44 11.22 127.77 1.43 1.88 16 14 O 0.02 0.27 8.30 70.36 0.58 0.86 16 15 C 0.11 2.27 5.92 86.61 0.51 2.79 16 16 C -0.08 -1.62 2.58 -9.70 -0.02 -1.65 16 17 H 0.08 1.71 7.86 -2.38 -0.02 1.70 16 18 C -0.10 -2.59 4.70 30.59 0.14 -2.44 16 19 C 0.15 5.51 6.15 86.38 0.53 6.04 16 20 N -0.75 -37.20 5.60 -343.47 -1.92 -39.12 16 21 C -0.25 -13.83 9.99 84.03 0.84 -12.99 16 22 H 0.07 3.88 7.83 -2.91 -0.02 3.86 16 23 C -0.07 -4.30 5.50 84.86 0.47 -3.83 16 24 N -0.97 -58.53 13.06 21.65 0.28 -58.24 16 25 Si 0.97 46.03 29.55 68.60 2.03 48.06 16 26 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 27 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 28 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 29 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.10 0.83 5.80 -2.39 -0.01 0.82 16 34 H 0.20 3.79 8.06 -2.91 -0.02 3.77 16 35 H 0.10 0.20 8.14 -2.39 -0.02 0.18 16 36 H 0.13 -0.18 8.14 -2.39 -0.02 -0.20 16 37 H 0.11 0.57 8.03 -2.39 -0.02 0.55 16 38 H 0.07 1.87 7.83 -2.39 -0.02 1.85 16 39 H 0.09 1.84 7.93 -2.39 -0.02 1.82 16 40 H 0.07 1.82 7.99 -2.39 -0.02 1.80 16 41 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 43 H 0.02 0.68 7.67 -2.39 -0.02 0.66 16 44 H 0.38 19.57 7.67 -92.71 -0.71 18.85 16 45 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -76.88 375.76 3.43 -73.45 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: 0.29 Total: 18.45 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: 6.82 Total: 10.79 kcal Atomic # 7 Polarization: -113.02 SS G_CDS: -6.13 Total: -119.16 kcal Atomic # 8 Polarization: -32.02 SS G_CDS: 0.43 Total: -31.59 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -76.88 3.43 -73.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104123591.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.571 kcal (2) G-P(sol) polarization free energy of solvation -76.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds