Wall clock time and date at job start Tue Mar 31 2020 14:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42897 * 114.00387 * 2 1 4 4 C 1.50704 * 109.47121 * 179.97438 * 3 2 1 5 5 N 1.29930 * 125.37698 * 90.00323 * 4 3 2 6 6 C 1.36064 * 108.47948 * 179.97438 * 5 4 3 7 7 C 1.47424 * 126.45453 * 179.97438 * 6 5 4 8 8 O 1.21605 * 120.00232 * 180.02562 * 7 6 5 9 9 N 1.34781 * 119.99438 * 0.02562 * 7 6 5 10 10 C 1.48113 * 127.02791 * 179.70982 * 9 7 6 11 11 C 1.54942 * 103.25098 * 219.55349 * 10 9 7 12 12 H 1.09004 * 110.74642 * 80.96295 * 11 10 9 13 13 C 1.53007 * 110.89505 * 204.21424 * 11 10 9 14 14 N 1.46499 * 109.47106 * 288.50456 * 13 11 10 15 15 C 1.36933 * 119.99935 * 179.97438 * 14 13 11 16 16 H 1.08000 * 120.00290 * 0.02562 * 15 14 13 17 17 C 1.38817 * 119.99686 * 180.02562 * 15 14 13 18 18 N 1.31614 * 120.00305 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99646 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47335 * 59.99598 * 19 17 15 21 21 H 1.48493 * 109.46905 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47093 * 299.99777 * 19 17 15 23 23 C 1.54620 * 102.84217 * 322.62061 * 11 10 9 24 24 H 1.08993 * 110.33147 * 262.95994 * 23 11 10 25 25 C 1.53001 * 110.41495 * 140.78109 * 23 11 10 26 26 C 1.47486 * 127.03579 * 0.02562 * 9 7 6 27 27 C 1.36094 * 107.10283 * 0.26377 * 6 5 4 28 28 O 1.34050 * 125.37677 * 269.95694 * 4 3 2 29 29 H 1.09003 * 109.47150 * 300.00638 * 1 2 3 30 30 H 1.09008 * 109.46641 * 59.99814 * 1 2 3 31 31 H 1.08999 * 109.47655 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46920 * 59.99965 * 3 2 1 33 33 H 1.09003 * 109.47433 * 299.99793 * 3 2 1 34 34 H 1.08997 * 110.66402 * 337.99428 * 10 9 7 35 35 H 1.08998 * 110.66769 * 101.11840 * 10 9 7 36 36 H 1.08994 * 109.46861 * 48.50866 * 13 11 10 37 37 H 1.09006 * 109.46771 * 168.50927 * 13 11 10 38 38 H 0.97002 * 119.99709 * 0.02562 * 14 13 11 39 39 H 0.96996 * 119.99900 * 179.97438 * 18 17 15 40 40 H 1.09001 * 109.47456 * 302.88601 * 25 23 11 41 41 H 1.09006 * 109.46648 * 62.87550 * 25 23 11 42 42 H 1.08996 * 109.47142 * 182.87740 * 25 23 11 43 43 H 1.08999 * 109.91088 * 273.65318 * 26 9 7 44 44 H 1.09002 * 109.90796 * 34.73635 * 26 9 7 45 45 H 1.07997 * 126.52877 * 179.74289 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 0.0006 5 7 4.2629 1.1267 -1.0584 6 6 5.5606 1.0245 -0.6624 7 6 6.7401 0.9305 -1.5419 8 8 7.8528 0.8425 -1.0594 9 7 6.5849 0.9423 -2.8807 10 6 7.6535 0.8631 -3.9032 11 6 7.1804 1.8615 -4.9895 12 1 7.4310 2.8846 -4.7092 13 6 7.7833 1.5120 -6.3516 14 7 9.2137 1.8284 -6.3482 15 6 9.9686 1.5980 -7.4672 16 1 9.5094 1.1833 -8.3524 17 6 11.3241 1.8973 -7.4637 18 7 11.8838 2.4022 -6.3848 19 14 12.3537 1.5836 -8.9904 20 1 11.8138 2.3775 -10.1234 21 1 13.7594 1.9854 -8.7305 22 1 12.3062 0.1391 -9.3313 23 6 5.6478 1.6566 -5.0004 24 1 5.3629 0.9723 -5.7994 25 6 4.9313 2.9978 -5.1697 26 6 5.3169 1.0431 -3.6272 27 6 5.5645 1.0186 0.6985 28 8 4.2859 1.1260 1.0940 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6886 1.8463 0.8900 33 1 1.6887 1.8464 -0.8900 34 1 8.6103 1.1752 -3.4846 35 1 7.7216 -0.1453 -4.3112 36 1 7.6468 0.4485 -6.5472 37 1 7.2849 2.0913 -7.1289 38 1 9.6262 2.2005 -5.5530 39 1 12.8310 2.6110 -6.3823 40 1 5.2348 3.6753 -4.3715 41 1 5.1954 3.4315 -6.1343 42 1 3.8535 2.8422 -5.1241 43 1 4.8835 0.0516 -3.7582 44 1 4.6193 1.6848 -3.0889 45 1 6.4312 0.9449 1.3386 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106815054.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:01 Heat of formation + Delta-G solvation = -33.665047 kcal Electronic energy + Delta-G solvation = -27262.655018 eV Core-core repulsion = 23282.967598 eV Total energy + Delta-G solvation = -3979.687420 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.75128 -39.89353 -38.45680 -37.81594 -35.23411 -34.53978 -32.71693 -31.81966 -31.32385 -29.12963 -28.22607 -26.48907 -26.16931 -25.76994 -23.91030 -22.81678 -21.86477 -21.12020 -19.84377 -19.74544 -17.89031 -17.61614 -17.04645 -16.75342 -16.43882 -16.23159 -16.08811 -15.81103 -15.28790 -14.61623 -14.30688 -14.11243 -13.84941 -13.47899 -13.42491 -13.16010 -12.95246 -12.92181 -12.83821 -12.32677 -12.12791 -12.07820 -11.80826 -11.55380 -11.30108 -11.07114 -10.87582 -10.80015 -10.47623 -10.40302 -10.38472 -10.28882 -10.06185 -9.97130 -9.61474 -9.42410 -8.83297 -8.50910 -6.88047 -5.71175 -3.00414 0.80508 1.59319 2.14739 2.89252 3.17284 3.30159 3.47665 3.51694 3.53146 3.74636 4.34839 4.36915 4.59507 4.62918 4.70935 4.76081 4.79133 4.85659 4.93645 5.03883 5.16622 5.18800 5.34046 5.39865 5.55983 5.60000 5.64032 5.67138 5.75722 5.92497 6.01581 6.07876 6.15112 6.19317 6.27529 6.29177 6.39693 6.45990 6.57599 6.76934 6.90733 7.13682 7.62042 7.73603 8.14023 8.47088 9.58110 10.15789 10.50267 11.51450 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.023570 B = 0.002476 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.669718 B =11306.920780 C =12150.400623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.385 6.385 3 C 0.162 3.838 4 C 0.187 3.813 5 N -0.431 5.431 6 C -0.062 4.062 7 C 0.614 3.386 8 O -0.536 6.536 9 N -0.602 5.602 10 C 0.115 3.885 11 C -0.101 4.101 12 H 0.083 0.917 13 C 0.165 3.835 14 N -0.733 5.733 15 C -0.241 4.241 16 H 0.070 0.930 17 C -0.014 4.014 18 N -0.932 5.932 19 Si 0.907 3.093 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 C -0.102 4.102 24 H 0.086 0.914 25 C -0.138 4.138 26 C 0.107 3.893 27 C 0.022 3.978 28 O -0.190 6.190 29 H 0.047 0.953 30 H 0.049 0.951 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.077 0.923 36 H 0.022 0.978 37 H 0.024 0.976 38 H 0.384 0.616 39 H 0.256 0.744 40 H 0.053 0.947 41 H 0.061 0.939 42 H 0.053 0.947 43 H 0.063 0.937 44 H 0.095 0.905 45 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.095 -1.466 15.179 30.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.303 6.303 3 C 0.084 3.916 4 C -0.022 4.022 5 N -0.164 5.164 6 C -0.183 4.183 7 C 0.401 3.599 8 O -0.413 6.413 9 N -0.334 5.334 10 C -0.006 4.006 11 C -0.121 4.121 12 H 0.102 0.898 13 C 0.037 3.963 14 N -0.377 5.377 15 C -0.372 4.372 16 H 0.088 0.912 17 C -0.210 4.210 18 N -0.580 5.580 19 Si 0.738 3.262 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.213 1.213 23 C -0.122 4.122 24 H 0.104 0.896 25 C -0.196 4.196 26 C -0.016 4.016 27 C -0.052 4.052 28 O -0.076 6.076 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.111 0.889 32 H 0.101 0.899 33 H 0.116 0.884 34 H 0.109 0.891 35 H 0.096 0.904 36 H 0.039 0.961 37 H 0.041 0.959 38 H 0.218 0.782 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.080 0.920 42 H 0.072 0.928 43 H 0.082 0.918 44 H 0.113 0.887 45 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -25.587 -1.718 14.776 29.597 hybrid contribution 0.882 0.086 0.078 0.890 sum -24.705 -1.632 14.853 28.872 Atomic orbital electron populations 1.22841 0.79270 1.03667 1.00581 1.87968 1.20835 1.25880 1.95600 1.20515 0.80812 0.86532 1.03698 1.25678 0.95382 1.02410 0.78690 1.70841 1.00992 1.15253 1.29289 1.21836 0.92011 1.11454 0.93001 1.16261 0.85951 0.77294 0.80411 1.90861 1.24392 1.51658 1.74407 1.48571 1.10382 1.70301 1.04105 1.22648 0.91307 0.99914 0.86772 1.22578 0.93358 0.99796 0.96384 0.89829 1.20628 0.86376 0.97229 0.92039 1.42373 1.02907 1.77081 1.15362 1.19164 0.90571 1.35271 0.92169 0.91240 1.24753 0.96896 1.01906 0.97435 1.69651 1.11465 1.49481 1.27450 0.86266 0.79547 0.77840 0.82506 1.21323 1.21731 1.21285 1.22128 0.95655 0.97897 0.96531 0.89586 1.21802 0.99438 0.96156 1.02186 1.22396 0.86118 1.01332 0.91788 1.25385 0.84767 0.99319 0.95738 1.84380 1.17121 1.68409 1.37650 0.93467 0.93237 0.88873 0.89915 0.88372 0.89136 0.90437 0.96071 0.95862 0.78210 0.93449 0.92797 0.92018 0.92776 0.91834 0.88679 0.74920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 11.01 101.05 1.11 1.24 16 2 O -0.38 -3.08 10.69 -35.23 -0.38 -3.45 16 3 C 0.16 1.04 6.56 36.01 0.24 1.28 16 4 C 0.19 1.90 7.93 -13.08 -0.10 1.80 16 5 N -0.43 -5.33 8.54 -7.65 -0.07 -5.39 16 6 C -0.06 -0.85 6.84 -83.02 -0.57 -1.41 16 7 C 0.61 10.16 7.89 -12.52 -0.10 10.06 16 8 O -0.54 -10.38 17.10 5.27 0.09 -10.29 16 9 N -0.60 -9.57 3.29 -171.03 -0.56 -10.13 16 10 C 0.11 2.00 6.46 -2.13 -0.01 1.99 16 11 C -0.10 -1.68 2.62 -88.74 -0.23 -1.92 16 12 H 0.08 1.49 7.86 -51.93 -0.41 1.08 16 13 C 0.17 3.29 5.58 -4.04 -0.02 3.27 16 14 N -0.73 -18.75 5.52 -59.91 -0.33 -19.08 16 15 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 16 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 17 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 18 N -0.93 -28.80 13.06 55.49 0.72 -28.07 16 19 Si 0.91 22.77 29.55 -169.99 -5.02 17.74 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 23 C -0.10 -1.33 3.17 -89.24 -0.28 -1.62 16 24 H 0.09 1.05 7.85 -51.93 -0.41 0.64 16 25 C -0.14 -1.58 8.90 37.16 0.33 -1.25 16 26 C 0.11 1.40 5.93 -2.98 -0.02 1.38 16 27 C 0.02 0.23 11.95 29.96 0.36 0.59 16 28 O -0.19 -1.94 10.73 6.48 0.07 -1.87 16 29 H 0.05 0.12 8.14 -51.93 -0.42 -0.30 16 30 H 0.05 0.14 8.14 -51.92 -0.42 -0.28 16 31 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.09 1.80 7.85 -51.93 -0.41 1.40 16 35 H 0.08 1.35 7.95 -51.93 -0.41 0.93 16 36 H 0.02 0.43 8.00 -51.93 -0.42 0.01 16 37 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.38 10.44 7.67 -40.82 -0.31 10.13 16 39 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 40 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.10 1.20 5.67 -51.93 -0.29 0.91 16 45 H 0.23 1.81 8.06 -52.49 -0.42 1.39 16 LS Contribution 378.59 15.07 5.71 5.71 Total: -1.00 -35.40 378.59 -6.17 -41.58 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -6.86 Total: 5.31 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: 0.45 Total: 7.95 kcal Atomic # 7 Polarization: -62.44 SS G_CDS: -0.23 Total: -62.67 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: -0.22 Total: -15.61 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.40 -6.17 -41.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106815054.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.911 kcal (2) G-P(sol) polarization free energy of solvation -35.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds