Wall clock time and date at job start Tue Mar 31 2020 14:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42897 * 114.00387 * 2 1 4 4 C 1.50704 * 109.47121 * 179.97438 * 3 2 1 5 5 N 1.29930 * 125.37698 * 90.00323 * 4 3 2 6 6 C 1.36064 * 108.47948 * 179.97438 * 5 4 3 7 7 C 1.47424 * 126.45453 * 179.97438 * 6 5 4 8 8 O 1.21605 * 120.00232 * 180.02562 * 7 6 5 9 9 N 1.34781 * 119.99438 * 0.02562 * 7 6 5 10 10 C 1.48113 * 127.02791 * 179.70982 * 9 7 6 11 11 C 1.54942 * 103.25098 * 219.55349 * 10 9 7 12 12 H 1.09004 * 110.74642 * 80.96295 * 11 10 9 13 13 C 1.53007 * 110.89505 * 204.21424 * 11 10 9 14 14 N 1.46499 * 109.47106 * 288.50456 * 13 11 10 15 15 C 1.36933 * 119.99935 * 179.97438 * 14 13 11 16 16 H 1.08000 * 120.00290 * 0.02562 * 15 14 13 17 17 C 1.38817 * 119.99686 * 180.02562 * 15 14 13 18 18 N 1.31614 * 120.00305 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99646 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47335 * 59.99598 * 19 17 15 21 21 H 1.48493 * 109.46905 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47093 * 299.99777 * 19 17 15 23 23 C 1.54620 * 102.84217 * 322.62061 * 11 10 9 24 24 H 1.08993 * 110.33147 * 262.95994 * 23 11 10 25 25 C 1.53001 * 110.41495 * 140.78109 * 23 11 10 26 26 C 1.47486 * 127.03579 * 0.02562 * 9 7 6 27 27 C 1.36094 * 107.10283 * 0.26377 * 6 5 4 28 28 O 1.34050 * 125.37677 * 269.95694 * 4 3 2 29 29 H 1.09003 * 109.47150 * 300.00638 * 1 2 3 30 30 H 1.09008 * 109.46641 * 59.99814 * 1 2 3 31 31 H 1.08999 * 109.47655 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46920 * 59.99965 * 3 2 1 33 33 H 1.09003 * 109.47433 * 299.99793 * 3 2 1 34 34 H 1.08997 * 110.66402 * 337.99428 * 10 9 7 35 35 H 1.08998 * 110.66769 * 101.11840 * 10 9 7 36 36 H 1.08994 * 109.46861 * 48.50866 * 13 11 10 37 37 H 1.09006 * 109.46771 * 168.50927 * 13 11 10 38 38 H 0.97002 * 119.99709 * 0.02562 * 14 13 11 39 39 H 0.96996 * 119.99900 * 179.97438 * 18 17 15 40 40 H 1.09001 * 109.47456 * 302.88601 * 25 23 11 41 41 H 1.09006 * 109.46648 * 62.87550 * 25 23 11 42 42 H 1.08996 * 109.47142 * 182.87740 * 25 23 11 43 43 H 1.08999 * 109.91088 * 273.65318 * 26 9 7 44 44 H 1.09002 * 109.90796 * 34.73635 * 26 9 7 45 45 H 1.07997 * 126.52877 * 179.74289 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 0.0006 5 7 4.2629 1.1267 -1.0584 6 6 5.5606 1.0245 -0.6624 7 6 6.7401 0.9305 -1.5419 8 8 7.8528 0.8425 -1.0594 9 7 6.5849 0.9423 -2.8807 10 6 7.6535 0.8631 -3.9032 11 6 7.1804 1.8615 -4.9895 12 1 7.4310 2.8846 -4.7092 13 6 7.7833 1.5120 -6.3516 14 7 9.2137 1.8284 -6.3482 15 6 9.9686 1.5980 -7.4672 16 1 9.5094 1.1833 -8.3524 17 6 11.3241 1.8973 -7.4637 18 7 11.8838 2.4022 -6.3848 19 14 12.3537 1.5836 -8.9904 20 1 11.8138 2.3775 -10.1234 21 1 13.7594 1.9854 -8.7305 22 1 12.3062 0.1391 -9.3313 23 6 5.6478 1.6566 -5.0004 24 1 5.3629 0.9723 -5.7994 25 6 4.9313 2.9978 -5.1697 26 6 5.3169 1.0431 -3.6272 27 6 5.5645 1.0186 0.6985 28 8 4.2859 1.1260 1.0940 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6886 1.8463 0.8900 33 1 1.6887 1.8464 -0.8900 34 1 8.6103 1.1752 -3.4846 35 1 7.7216 -0.1453 -4.3112 36 1 7.6468 0.4485 -6.5472 37 1 7.2849 2.0913 -7.1289 38 1 9.6262 2.2005 -5.5530 39 1 12.8310 2.6110 -6.3823 40 1 5.2348 3.6753 -4.3715 41 1 5.1954 3.4315 -6.1343 42 1 3.8535 2.8422 -5.1241 43 1 4.8835 0.0516 -3.7582 44 1 4.6193 1.6848 -3.0889 45 1 6.4312 0.9449 1.3386 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106815054.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:00 Heat of formation + Delta-G solvation = -60.796594 kcal Electronic energy + Delta-G solvation = -27263.831530 eV Core-core repulsion = 23282.967598 eV Total energy + Delta-G solvation = -3980.863932 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.59429 -41.16979 -39.17092 -38.88185 -36.50970 -36.03022 -34.14799 -33.05446 -32.56809 -30.73266 -28.84309 -27.66068 -27.21310 -26.61315 -25.45917 -24.26995 -22.70264 -22.49693 -21.15608 -20.80964 -19.28381 -18.67247 -18.30065 -17.78969 -17.34768 -16.99803 -16.83957 -16.61795 -16.47603 -16.36428 -15.68790 -15.43296 -15.16068 -14.86689 -14.82887 -14.36847 -14.07688 -13.85830 -13.67048 -13.44143 -13.29536 -13.18420 -12.91278 -12.71399 -12.62516 -12.48795 -12.30023 -12.21501 -11.99733 -11.90035 -11.76197 -11.59374 -11.39398 -11.28338 -10.91913 -10.77090 -10.33915 -9.77419 -8.99599 -7.93488 -5.23104 -0.07259 0.69317 1.38627 1.47267 1.51076 1.57107 1.74777 2.06212 2.51372 2.57026 3.14731 3.35870 3.40372 3.58005 3.65920 3.67746 3.81145 4.10812 4.17265 4.24064 4.25364 4.38231 4.39029 4.51278 4.53689 4.55779 4.56531 4.64898 4.68402 4.77421 4.82563 4.87558 4.88355 4.94871 5.06640 5.14124 5.19675 5.25799 5.33328 5.49715 5.54288 6.04136 6.24613 6.27618 6.41369 6.87652 7.33639 8.09530 8.31965 9.30021 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.023570 B = 0.002476 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.669718 B =11306.920780 C =12150.400623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.416 6.416 3 C 0.160 3.840 4 C 0.194 3.806 5 N -0.450 5.450 6 C -0.095 4.095 7 C 0.608 3.392 8 O -0.577 6.577 9 N -0.605 5.605 10 C 0.118 3.882 11 C -0.091 4.091 12 H 0.068 0.932 13 C 0.166 3.834 14 N -0.748 5.748 15 C -0.244 4.244 16 H 0.080 0.920 17 C -0.080 4.080 18 N -0.972 5.972 19 Si 0.976 3.024 20 H -0.275 1.275 21 H -0.298 1.298 22 H -0.277 1.277 23 C -0.092 4.092 24 H 0.103 0.897 25 C -0.134 4.134 26 C 0.112 3.888 27 C 0.043 3.957 28 O -0.186 6.186 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.095 0.905 32 H 0.113 0.887 33 H 0.117 0.883 34 H 0.054 0.946 35 H 0.076 0.924 36 H 0.028 0.972 37 H 0.033 0.967 38 H 0.371 0.629 39 H 0.250 0.750 40 H 0.045 0.955 41 H 0.058 0.942 42 H 0.082 0.918 43 H 0.073 0.927 44 H 0.105 0.895 45 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.207 -1.597 14.959 32.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.335 6.335 3 C 0.083 3.917 4 C -0.016 4.016 5 N -0.181 5.181 6 C -0.215 4.215 7 C 0.397 3.603 8 O -0.458 6.458 9 N -0.335 5.335 10 C -0.005 4.005 11 C -0.110 4.110 12 H 0.086 0.914 13 C 0.040 3.960 14 N -0.390 5.390 15 C -0.375 4.375 16 H 0.098 0.902 17 C -0.272 4.272 18 N -0.623 5.623 19 Si 0.805 3.195 20 H -0.201 1.201 21 H -0.224 1.224 22 H -0.203 1.203 23 C -0.111 4.111 24 H 0.121 0.879 25 C -0.191 4.191 26 C -0.010 4.010 27 C -0.032 4.032 28 O -0.071 6.071 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.113 0.887 32 H 0.130 0.870 33 H 0.135 0.865 34 H 0.073 0.927 35 H 0.094 0.906 36 H 0.046 0.954 37 H 0.051 0.949 38 H 0.203 0.797 39 H 0.059 0.941 40 H 0.064 0.936 41 H 0.078 0.922 42 H 0.100 0.900 43 H 0.092 0.908 44 H 0.123 0.877 45 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -28.784 -1.862 14.515 32.290 hybrid contribution 1.714 0.097 0.209 1.729 sum -27.070 -1.765 14.725 30.866 Atomic orbital electron populations 1.23030 0.77372 1.04369 1.02025 1.87909 1.22913 1.26757 1.95923 1.20860 0.78264 0.86506 1.06061 1.26530 0.96733 1.00293 0.78000 1.70758 1.00482 1.16525 1.30365 1.21487 0.91721 1.14716 0.93531 1.16718 0.86497 0.76364 0.80713 1.90822 1.26220 1.53623 1.75142 1.48652 1.10830 1.70012 1.04039 1.22436 0.90588 0.99895 0.87531 1.22388 0.96097 0.98422 0.94133 0.91368 1.20779 0.83618 0.97499 0.94134 1.42623 1.05116 1.77017 1.14253 1.19627 0.91075 1.33808 0.93030 0.90228 1.25636 0.98362 1.02672 1.00529 1.69833 1.11301 1.51439 1.29720 0.85169 0.77251 0.78046 0.79037 1.20115 1.22430 1.20317 1.22132 0.92534 0.99422 0.97045 0.87913 1.21778 1.00933 0.94695 1.01723 1.22516 0.84954 1.02147 0.91385 1.25816 0.85597 0.96683 0.95068 1.84432 1.16813 1.68187 1.37706 0.91756 0.92034 0.88653 0.86965 0.86542 0.92698 0.90586 0.95370 0.94871 0.79726 0.94107 0.93607 0.92243 0.89960 0.90824 0.87680 0.72614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 113.37 1.25 1.40 16 2 O -0.42 -5.65 10.69 -148.98 -1.59 -7.24 16 3 C 0.16 1.58 6.56 71.24 0.47 2.05 16 4 C 0.19 3.53 7.93 88.39 0.70 4.23 16 5 N -0.45 -10.45 8.54 -293.03 -2.50 -12.95 16 6 C -0.10 -2.55 6.84 40.41 0.28 -2.27 16 7 C 0.61 20.71 7.89 86.66 0.68 21.40 16 8 O -0.58 -23.52 17.10 -4.05 -0.07 -23.59 16 9 N -0.60 -19.55 3.29 -813.27 -2.68 -22.22 16 10 C 0.12 4.28 6.46 86.73 0.56 4.84 16 11 C -0.09 -3.03 2.62 -9.58 -0.03 -3.05 16 12 H 0.07 2.50 7.86 -2.38 -0.02 2.48 16 13 C 0.17 6.58 5.58 86.38 0.48 7.06 16 14 N -0.75 -39.01 5.52 -343.44 -1.90 -40.90 16 15 C -0.24 -13.86 9.99 84.04 0.84 -13.02 16 16 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 17 C -0.08 -4.73 5.50 84.86 0.47 -4.26 16 18 N -0.97 -61.77 13.06 21.65 0.28 -61.48 16 19 Si 0.98 47.19 29.55 68.60 2.03 49.22 16 20 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 21 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 22 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 23 C -0.09 -2.23 3.17 -9.90 -0.03 -2.26 16 24 H 0.10 2.21 7.85 -2.39 -0.02 2.19 16 25 C -0.13 -2.75 8.90 71.98 0.64 -2.11 16 26 C 0.11 2.79 5.93 86.53 0.51 3.30 16 27 C 0.04 0.87 11.95 67.32 0.80 1.68 16 28 O -0.19 -3.42 10.73 0.29 0.00 -3.42 16 29 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 30 H 0.06 0.18 8.14 -2.38 -0.02 0.16 16 31 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.05 2.37 7.85 -2.39 -0.02 2.35 16 35 H 0.08 2.74 7.95 -2.39 -0.02 2.72 16 36 H 0.03 1.10 8.00 -2.39 -0.02 1.08 16 37 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 38 H 0.37 21.06 7.67 -92.71 -0.71 20.35 16 39 H 0.25 15.46 8.31 -92.71 -0.77 14.69 16 40 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 42 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.11 2.47 5.67 -2.39 -0.01 2.45 16 45 H 0.26 3.68 8.06 -2.91 -0.02 3.66 16 Total: -1.00 -78.64 378.59 1.50 -77.15 By element: Atomic # 1 Polarization: 26.18 SS G_CDS: 0.29 Total: 26.47 kcal Atomic # 6 Polarization: 11.35 SS G_CDS: 7.63 Total: 18.98 kcal Atomic # 7 Polarization: -130.77 SS G_CDS: -6.79 Total: -137.56 kcal Atomic # 8 Polarization: -32.59 SS G_CDS: -1.66 Total: -34.25 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 2.03 Total: 49.22 kcal Total: -78.64 1.50 -77.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106815054.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.351 kcal (2) G-P(sol) polarization free energy of solvation -78.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds