Wall clock time and date at job start Tue Mar 31 2020 14:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46493 * 109.47677 * 2 1 4 4 N 1.28444 * 125.19344 * 90.02447 * 3 2 1 5 5 C 1.30877 * 110.94375 * 179.97438 * 4 3 2 6 6 C 1.50703 * 126.06095 * 179.97438 * 5 4 3 7 7 C 1.53002 * 109.46966 * 265.02522 * 6 5 4 8 8 C 1.53000 * 109.46912 * 145.02610 * 6 5 4 9 9 C 1.39638 * 107.88133 * 0.26257 * 5 4 3 10 10 C 1.36651 * 125.19732 * 270.00396 * 3 2 1 11 11 C 1.46998 * 126.89435 * 0.02562 * 10 3 2 12 12 O 1.21552 * 120.00210 * 180.02562 * 11 10 3 13 13 O 1.34822 * 120.00152 * 0.02562 * 11 10 3 14 14 C 1.45198 * 117.00342 * 180.02562 * 13 11 10 15 15 C 1.50695 * 109.47384 * 179.97438 * 14 13 11 16 16 O 1.21285 * 119.99820 * 359.97438 * 15 14 13 17 17 N 1.34770 * 120.00011 * 179.97438 * 15 14 13 18 18 C 1.46501 * 119.99988 * 179.97438 * 17 15 14 19 19 C 1.50701 * 109.47502 * 179.97438 * 18 17 15 20 20 H 1.08008 * 119.99541 * 359.97438 * 19 18 17 21 21 C 1.37872 * 120.00434 * 179.97438 * 19 18 17 22 22 N 1.31516 * 120.00179 * 180.02562 * 21 19 18 23 23 Si 1.86797 * 119.99948 * 0.02562 * 21 19 18 24 24 H 1.48502 * 109.47139 * 89.99870 * 23 21 19 25 25 H 1.48496 * 109.47341 * 210.00050 * 23 21 19 26 26 H 1.48504 * 109.47167 * 329.99842 * 23 21 19 27 27 H 1.09002 * 109.46588 * 59.99723 * 1 2 3 28 28 H 1.09001 * 109.47485 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47154 * 300.00182 * 1 2 3 30 30 H 1.08999 * 109.47154 * 239.99817 * 2 1 3 31 31 H 1.09003 * 109.46981 * 120.00644 * 2 1 3 32 32 H 1.09002 * 109.47152 * 25.02382 * 6 5 4 33 33 H 1.09002 * 109.47075 * 299.99352 * 7 6 5 34 34 H 1.08996 * 109.47407 * 60.00310 * 7 6 5 35 35 H 1.09000 * 109.46986 * 180.02562 * 7 6 5 36 36 H 1.09004 * 109.46724 * 180.02562 * 8 6 5 37 37 H 1.09001 * 109.47194 * 299.99742 * 8 6 5 38 38 H 1.08992 * 109.47399 * 59.99914 * 8 6 5 39 39 H 1.07996 * 127.32769 * 179.73436 * 9 5 4 40 40 H 1.09012 * 109.46432 * 299.99761 * 14 13 11 41 41 H 1.09000 * 109.47460 * 59.98955 * 14 13 11 42 42 H 0.97007 * 120.00363 * 359.97438 * 17 15 14 43 43 H 1.08998 * 109.47433 * 299.99914 * 18 17 15 44 44 H 1.09000 * 109.47399 * 59.99542 * 18 17 15 45 45 H 0.96998 * 120.00126 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3811 0.0000 4 7 2.2657 2.0789 1.0497 5 6 2.6890 3.2746 0.7275 6 6 3.0757 4.3680 1.6899 7 6 1.8785 5.2927 1.9190 8 6 4.2382 5.1735 1.1062 9 6 2.7126 3.3601 -0.6661 10 6 2.2810 2.1237 -1.1167 11 6 2.1297 1.6978 -2.5154 12 8 2.4018 2.4657 -3.4175 13 8 1.6891 0.4553 -2.7979 14 6 1.5646 0.1030 -4.2010 15 6 1.0631 -1.3130 -4.3209 16 8 0.8337 -1.9616 -3.3221 17 7 0.8695 -1.8585 -5.5379 18 6 0.3825 -3.2352 -5.6545 19 6 0.2519 -3.6004 -7.1108 20 1 0.5059 -2.8788 -7.8733 21 6 -0.1917 -4.8555 -7.4698 22 7 -0.3052 -5.1742 -8.7406 23 14 -0.6316 -6.1032 -6.1510 24 1 -2.0683 -5.9674 -5.8007 25 1 -0.3738 -7.4739 -6.6607 26 1 0.1975 -5.8601 -4.9432 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.3802 3.9260 2.6387 33 1 1.5742 5.7348 0.9702 34 1 1.0504 4.7189 2.3348 35 1 2.1584 6.0838 2.6147 36 1 4.5181 5.9640 1.8026 37 1 5.0911 4.5147 0.9431 38 1 3.9338 5.6155 0.1576 39 1 3.0071 4.2090 -1.2652 40 1 0.8605 0.7805 -4.6844 41 1 2.5381 0.1855 -4.6842 42 1 1.0526 -1.3395 -6.3368 43 1 1.0873 -3.9121 -5.1717 44 1 -0.5907 -3.3186 -5.1707 45 1 -0.6177 -6.0571 -8.9932 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115840572.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:25 Heat of formation + Delta-G solvation = -77.258273 kcal Electronic energy + Delta-G solvation = -27021.639813 eV Core-core repulsion = 23040.062049 eV Total energy + Delta-G solvation = -3981.577764 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.77724 -41.62931 -40.36668 -37.77314 -37.09004 -36.19692 -34.66382 -34.46166 -32.43118 -31.08629 -30.30952 -28.90067 -27.94434 -25.52734 -24.99354 -23.97649 -23.22766 -21.75040 -21.56965 -20.88799 -19.38622 -18.80997 -18.37005 -18.04682 -17.67214 -16.99755 -16.91267 -16.77417 -16.14058 -16.05561 -15.59788 -15.36143 -14.99578 -14.78691 -14.64935 -14.49837 -14.35526 -14.12591 -13.88726 -13.80399 -13.42890 -13.09895 -13.03561 -12.88182 -12.71200 -12.51735 -12.39730 -12.14992 -12.01814 -11.99566 -11.93750 -11.89847 -11.67061 -11.48888 -10.97887 -10.92587 -10.37150 -10.03557 -9.98389 -8.40111 -6.47856 -0.18770 0.94778 1.33596 1.34087 1.36761 1.38289 1.47350 1.50794 1.71817 2.27719 2.39473 2.95401 3.19639 3.41067 3.61668 3.78400 3.96054 3.96847 3.99984 4.01238 4.21637 4.30021 4.31580 4.39415 4.43951 4.63013 4.72819 4.74669 4.80239 4.90034 4.94052 5.01232 5.04914 5.07872 5.09591 5.20330 5.23713 5.37842 5.39367 5.45055 5.48923 5.62638 6.04671 6.30199 6.52528 6.70641 6.92747 7.10651 7.25971 8.74412 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.029634 B = 0.002307 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.632307 B =12133.847001 C =12831.999944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.108 3.892 3 N -0.259 5.259 4 N -0.275 5.275 5 C 0.025 3.975 6 C -0.008 4.008 7 C -0.139 4.139 8 C -0.142 4.142 9 C -0.139 4.139 10 C -0.048 4.048 11 C 0.547 3.453 12 O -0.506 6.506 13 O -0.337 6.337 14 C 0.056 3.944 15 C 0.507 3.493 16 O -0.570 6.570 17 N -0.697 5.697 18 C 0.234 3.766 19 C -0.549 4.549 20 H 0.060 0.940 21 C 0.025 3.975 22 N -0.931 5.931 23 Si 0.938 3.062 24 H -0.265 1.265 25 H -0.276 1.276 26 H -0.256 1.256 27 H 0.048 0.952 28 H 0.091 0.909 29 H 0.066 0.934 30 H 0.108 0.892 31 H 0.118 0.882 32 H 0.087 0.913 33 H 0.057 0.943 34 H 0.045 0.955 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.052 0.948 38 H 0.063 0.937 39 H 0.180 0.820 40 H 0.126 0.874 41 H 0.126 0.874 42 H 0.412 0.588 43 H 0.019 0.981 44 H 0.018 0.982 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.522 20.156 21.149 29.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.010 4.010 3 N -0.050 5.050 4 N -0.110 5.110 5 C -0.131 4.131 6 C -0.029 4.029 7 C -0.197 4.197 8 C -0.200 4.200 9 C -0.167 4.167 10 C -0.173 4.173 11 C 0.391 3.609 12 O -0.393 6.393 13 O -0.252 6.252 14 C -0.020 4.020 15 C 0.293 3.707 16 O -0.450 6.450 17 N -0.349 5.349 18 C 0.111 3.889 19 C -0.586 4.586 20 H 0.079 0.921 21 C -0.176 4.176 22 N -0.570 5.570 23 Si 0.762 3.238 24 H -0.190 1.190 25 H -0.201 1.201 26 H -0.180 1.180 27 H 0.067 0.933 28 H 0.110 0.890 29 H 0.085 0.915 30 H 0.126 0.874 31 H 0.136 0.864 32 H 0.105 0.895 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.198 0.802 40 H 0.144 0.856 41 H 0.144 0.856 42 H 0.249 0.751 43 H 0.037 0.963 44 H 0.035 0.965 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.074 18.872 22.268 29.814 hybrid contribution -0.169 -0.395 -1.395 1.459 sum 5.905 18.477 20.873 28.495 Atomic orbital electron populations 1.21988 0.92708 1.04249 1.02128 1.22370 0.96810 0.75355 1.06484 1.46246 1.44274 1.12891 1.01545 1.73113 1.17674 1.06210 1.13983 1.22496 1.03504 0.93438 0.93628 1.19577 0.96873 0.90754 0.95657 1.21807 0.96500 0.98991 1.02418 1.21837 0.96358 0.99866 1.01926 1.22260 1.03497 0.96064 0.94922 1.20671 1.15477 0.95437 0.85747 1.19775 0.73661 0.79661 0.87841 1.90892 1.47667 1.53908 1.46830 1.86612 1.77472 1.31716 1.29428 1.22853 1.05808 0.93604 0.79772 1.20399 0.78289 0.88422 0.83610 1.90668 1.52791 1.64125 1.37372 1.45855 1.65613 1.15778 1.07622 1.19159 0.94170 0.79749 0.95851 1.21291 1.46185 1.00140 0.91031 0.92144 1.25620 0.94427 1.00067 0.97447 1.69983 1.47022 1.22389 1.17585 0.85848 0.79748 0.78487 0.79759 1.18992 1.20145 1.18019 0.93267 0.89036 0.91473 0.87380 0.86381 0.89460 0.92399 0.93623 0.89951 0.90030 0.92916 0.91790 0.80241 0.85618 0.85592 0.75143 0.96346 0.96452 0.91866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.14 10.24 71.98 0.74 -2.40 16 2 C 0.11 2.31 6.50 86.38 0.56 2.87 16 3 N -0.26 -6.14 3.35 -334.75 -1.12 -7.26 16 4 N -0.28 -6.41 11.90 -47.51 -0.57 -6.98 16 5 C 0.02 0.49 6.12 43.04 0.26 0.75 16 6 C -0.01 -0.11 3.38 -11.54 -0.04 -0.15 16 7 C -0.14 -1.57 9.18 71.98 0.66 -0.91 16 8 C -0.14 -1.41 8.79 71.98 0.63 -0.77 16 9 C -0.14 -2.90 10.00 22.67 0.23 -2.67 16 10 C -0.05 -1.19 6.96 40.75 0.28 -0.91 16 11 C 0.55 14.35 7.93 70.12 0.56 14.91 16 12 O -0.51 -14.36 16.71 19.67 0.33 -14.03 16 13 O -0.34 -9.05 7.22 -50.95 -0.37 -9.41 16 14 C 0.06 1.39 5.96 71.23 0.42 1.82 16 15 C 0.51 17.08 7.91 87.66 0.69 17.78 16 16 O -0.57 -23.15 16.50 15.75 0.26 -22.89 16 17 N -0.70 -25.38 5.55 -466.80 -2.59 -27.97 16 18 C 0.23 10.74 4.50 85.63 0.39 11.12 16 19 C -0.55 -29.05 9.83 25.60 0.25 -28.79 16 20 H 0.06 3.37 7.84 -2.91 -0.02 3.34 16 21 C 0.02 1.36 5.47 84.65 0.46 1.82 16 22 N -0.93 -54.48 13.96 21.45 0.30 -54.18 16 23 Si 0.94 42.47 27.47 68.60 1.88 44.35 16 24 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 25 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 26 H -0.26 -11.31 6.54 99.48 0.65 -10.66 16 27 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.11 2.62 6.15 -2.39 -0.01 2.60 16 31 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.09 1.13 8.14 -2.39 -0.02 1.12 16 33 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.06 0.60 7.37 -2.39 -0.02 0.58 16 39 H 0.18 3.07 7.52 -2.91 -0.02 3.05 16 40 H 0.13 2.60 8.14 -2.38 -0.02 2.58 16 41 H 0.13 2.60 8.14 -2.39 -0.02 2.58 16 42 H 0.41 12.88 8.32 -92.70 -0.77 12.11 16 43 H 0.02 0.89 7.20 -2.39 -0.02 0.88 16 44 H 0.02 0.83 7.57 -2.39 -0.02 0.81 16 45 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 Total: -1.00 -68.47 384.14 4.40 -64.06 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: 0.18 Total: 19.85 kcal Atomic # 6 Polarization: 8.36 SS G_CDS: 6.10 Total: 14.46 kcal Atomic # 7 Polarization: -92.41 SS G_CDS: -3.98 Total: -96.39 kcal Atomic # 8 Polarization: -46.56 SS G_CDS: 0.22 Total: -46.34 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 1.88 Total: 44.35 kcal Total: -68.47 4.40 -64.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115840572.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.195 kcal (2) G-P(sol) polarization free energy of solvation -68.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds