Wall clock time and date at job start Tue Mar 31 2020 14:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46494 * 109.47649 * 2 1 4 4 C 1.46502 * 119.99959 * 270.00116 * 3 2 1 5 5 C 1.50693 * 109.47137 * 269.99448 * 4 3 2 6 6 H 1.08001 * 120.00341 * 0.02562 * 5 4 3 7 7 C 1.37881 * 120.00389 * 179.97438 * 5 4 3 8 8 N 1.31509 * 120.00203 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99696 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47226 * 89.99308 * 9 7 5 11 11 H 1.48498 * 109.47106 * 209.99596 * 9 7 5 12 12 H 1.48507 * 109.47114 * 329.99878 * 9 7 5 13 13 C 1.34777 * 120.00014 * 89.99602 * 3 2 1 14 14 O 1.21280 * 119.99776 * 180.02562 * 13 3 2 15 15 C 1.50695 * 120.00151 * 0.02562 * 13 3 2 16 16 N 1.46903 * 109.47432 * 180.02562 * 15 13 3 17 17 C 1.46899 * 110.99966 * 180.02562 * 16 15 13 18 18 C 1.53003 * 109.46898 * 179.97438 * 17 16 15 19 19 N 1.46497 * 109.47109 * 179.97438 * 18 17 16 20 20 C 1.34773 * 120.00174 * 180.02562 * 19 18 17 21 21 O 1.21618 * 120.00100 * 359.97438 * 20 19 18 22 22 C 1.47376 * 120.00312 * 179.97438 * 20 19 18 23 23 C 1.47019 * 127.19544 * 180.28123 * 22 20 19 24 24 C 1.34177 * 105.95809 * 180.17417 * 23 22 20 25 25 O 1.34214 * 109.12112 * 359.60541 * 24 23 22 26 26 C 1.33655 * 110.90867 * 0.26473 * 25 24 23 27 27 H 1.09003 * 109.47074 * 300.00484 * 1 2 3 28 28 H 1.09008 * 109.46871 * 59.99929 * 1 2 3 29 29 H 1.09001 * 109.47156 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47074 * 239.99516 * 2 1 3 31 31 H 1.09000 * 109.46995 * 120.00392 * 2 1 3 32 32 H 1.08999 * 109.47083 * 29.99833 * 4 3 2 33 33 H 1.09004 * 109.46938 * 149.99711 * 4 3 2 34 34 H 0.97000 * 119.99829 * 180.02562 * 8 7 5 35 35 H 1.09000 * 109.47462 * 59.99645 * 15 13 3 36 36 H 1.09008 * 109.46703 * 299.99839 * 15 13 3 37 37 H 1.00902 * 110.99550 * 303.94879 * 16 15 13 38 38 H 1.08994 * 109.47123 * 59.99656 * 17 16 15 39 39 H 1.08996 * 109.46815 * 299.99476 * 17 16 15 40 40 H 1.09003 * 109.46665 * 60.00045 * 18 17 16 41 41 H 1.08996 * 109.46757 * 299.99826 * 18 17 16 42 42 H 0.97003 * 120.00150 * 359.97438 * 19 18 17 43 43 H 1.08005 * 127.02536 * 0.08201 * 23 22 20 44 44 H 1.08002 * 125.44341 * 179.87398 * 24 23 22 45 45 H 1.08001 * 125.79936 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0717 -1.2687 5 6 3.6858 1.8349 -1.7037 6 1 4.3427 1.2301 -1.0962 7 6 4.1493 2.3895 -2.8780 8 7 5.3912 2.1824 -3.2578 9 14 3.0130 3.4350 -3.9293 10 1 3.1164 4.8553 -3.5081 11 1 3.4060 3.3118 -5.3560 12 1 1.6132 2.9690 -3.7593 13 6 2.2430 2.0165 1.1672 14 8 2.6470 3.1600 1.1672 15 6 1.9923 1.3060 2.4723 16 7 2.3098 2.2062 3.5889 17 6 2.0773 1.5456 4.8802 18 6 2.4188 2.5120 6.0162 19 7 2.1864 1.8534 7.3040 20 6 2.4207 2.5181 8.4528 21 8 2.8256 3.6644 8.4204 22 6 2.1864 1.8558 9.7483 23 6 2.3823 2.4290 11.0879 24 6 2.0472 1.4621 11.9556 25 8 1.6628 0.3725 11.2727 26 6 1.7377 0.5842 9.9552 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.5818 1.6876 -2.0284 33 1 2.0957 3.1410 -1.1384 34 1 5.7172 2.5728 -4.0837 35 1 2.6227 0.4186 2.5299 36 1 0.9443 1.0115 2.5301 37 1 3.2579 2.5449 3.5219 38 1 2.7089 0.6604 4.9544 39 1 1.0302 1.2522 4.9548 40 1 1.7874 3.3974 5.9421 41 1 3.4659 2.8051 5.9413 42 1 1.8631 0.9392 7.3299 43 1 2.7272 3.4247 11.3251 44 1 2.0774 1.5482 13.0317 45 1 1.4861 -0.1301 9.1852 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123501171.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:54 Heat of formation + Delta-G solvation = -46.326671 kcal Electronic energy + Delta-G solvation = -25989.299219 eV Core-core repulsion = 22009.062751 eV Total energy + Delta-G solvation = -3980.236469 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.98813 -39.73753 -39.24840 -36.62807 -35.39170 -34.46898 -33.28327 -32.71515 -30.76972 -30.36513 -29.44588 -27.83476 -25.61863 -23.81504 -23.00633 -22.37889 -21.92462 -21.87088 -20.46219 -18.94837 -18.38630 -16.94302 -16.78232 -16.63629 -16.40360 -16.36800 -16.20154 -15.57454 -15.27651 -15.17931 -14.46502 -14.09467 -13.98804 -13.66356 -13.50747 -13.38899 -13.33120 -13.22290 -12.86513 -12.50666 -12.36821 -12.21257 -11.89820 -11.71125 -11.63330 -11.37167 -10.98098 -10.74936 -10.50254 -10.38184 -10.26875 -10.15929 -9.55199 -9.45248 -9.25693 -9.06901 -8.59379 -8.49229 -7.73319 -6.09487 -4.08258 0.89124 1.64213 2.43282 2.69894 3.03117 3.29271 3.32951 3.35216 3.37639 3.65839 4.09988 4.20356 4.31452 4.39502 4.52917 4.69420 4.82746 4.98642 5.05672 5.16519 5.17118 5.21167 5.24710 5.35729 5.41222 5.41834 5.53868 5.65132 5.69509 5.74816 5.82374 5.92580 6.03612 6.11808 6.36268 6.46325 6.62309 6.79596 6.96834 7.12189 7.25373 7.34542 7.60824 7.88979 8.24433 8.46112 8.91768 8.98634 9.51024 11.03842 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.025886 B = 0.001837 C = 0.001769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.416512 B =15236.001827 C =15823.233215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.106 3.894 3 N -0.594 5.594 4 C 0.217 3.783 5 C -0.529 4.529 6 H 0.073 0.927 7 C 0.072 3.928 8 N -0.898 5.898 9 Si 0.877 3.123 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.506 3.494 14 O -0.526 6.526 15 C 0.044 3.956 16 N -0.670 5.670 17 C 0.051 3.949 18 C 0.120 3.880 19 N -0.726 5.726 20 C 0.585 3.415 21 O -0.530 6.530 22 C -0.233 4.233 23 C -0.165 4.165 24 C -0.040 4.040 25 O -0.175 6.175 26 C 0.019 3.981 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.084 0.916 31 H 0.066 0.934 32 H 0.029 0.971 33 H 0.036 0.964 34 H 0.264 0.736 35 H 0.057 0.943 36 H 0.096 0.904 37 H 0.357 0.643 38 H 0.036 0.964 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.397 0.603 43 H 0.160 0.840 44 H 0.210 0.790 45 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.336 -9.509 26.454 30.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.018 4.018 3 N -0.327 5.327 4 C 0.097 3.903 5 C -0.567 4.567 6 H 0.091 0.909 7 C -0.130 4.130 8 N -0.536 5.536 9 Si 0.704 3.296 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.292 3.708 14 O -0.402 6.402 15 C -0.088 4.088 16 N -0.303 5.303 17 C -0.080 4.080 18 C -0.003 4.003 19 N -0.378 5.378 20 C 0.373 3.627 21 O -0.407 6.407 22 C -0.238 4.238 23 C -0.185 4.185 24 C -0.106 4.106 25 O -0.070 6.070 26 C -0.051 4.051 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.103 0.897 31 H 0.084 0.916 32 H 0.047 0.953 33 H 0.054 0.946 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.114 0.886 37 H 0.177 0.823 38 H 0.054 0.946 39 H 0.097 0.903 40 H 0.101 0.899 41 H 0.090 0.910 42 H 0.231 0.769 43 H 0.178 0.822 44 H 0.226 0.774 45 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -11.383 -7.946 26.362 29.793 hybrid contribution 0.219 -0.487 -0.767 0.934 sum -11.164 -8.433 25.595 29.169 Atomic orbital electron populations 1.22241 0.96751 1.01528 1.02335 1.21436 0.93412 0.83921 1.03020 1.47929 1.64421 1.13336 1.06988 1.19636 0.97232 0.93444 0.80034 1.21322 0.95374 1.32929 1.07117 0.90861 1.24861 0.95013 0.95796 0.97376 1.69893 1.15148 1.44984 1.23578 0.86842 0.81431 0.81658 0.79703 1.19869 1.21098 1.19080 1.20162 0.78730 0.87083 0.84854 1.90690 1.44826 1.17754 1.86883 1.21878 1.02460 0.94305 0.90190 1.59985 1.33312 1.37439 0.99603 1.22069 1.01684 0.95103 0.89096 1.21298 1.02522 0.96234 0.80284 1.45715 1.68920 1.17362 1.05813 1.17241 0.77434 0.85589 0.82468 1.90829 1.45262 1.17276 1.87355 1.21563 1.11832 0.95661 0.94750 1.22826 1.04501 1.01252 0.89876 1.23989 1.03916 0.84404 0.98281 1.83800 1.66722 1.38615 1.17815 1.24449 1.00138 0.96988 0.83521 0.92933 0.92167 0.92018 0.89717 0.91590 0.95288 0.94552 0.92563 0.92552 0.88568 0.82333 0.94582 0.90318 0.89911 0.90972 0.76938 0.82189 0.77360 0.77239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.01 10.24 37.16 0.38 -1.63 16 2 C 0.11 1.55 5.93 -4.05 -0.02 1.53 16 3 N -0.59 -11.79 2.46 -175.07 -0.43 -12.22 16 4 C 0.22 5.26 4.23 -5.20 -0.02 5.23 16 5 C -0.53 -15.09 9.94 -34.44 -0.34 -15.43 16 6 H 0.07 2.28 8.06 -52.49 -0.42 1.86 16 7 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 8 N -0.90 -27.63 13.96 55.43 0.77 -26.85 16 9 Si 0.88 21.62 27.47 -169.99 -4.67 16.95 16 10 H -0.27 -6.82 7.11 56.52 0.40 -6.41 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.27 -6.16 6.54 56.52 0.37 -5.79 16 13 C 0.51 9.96 7.71 -10.99 -0.08 9.87 16 14 O -0.53 -12.81 15.78 5.56 0.09 -12.73 16 15 C 0.04 0.60 4.72 -4.98 -0.02 0.57 16 16 N -0.67 -8.78 6.13 -115.06 -0.70 -9.48 16 17 C 0.05 0.45 5.80 -3.82 -0.02 0.42 16 18 C 0.12 1.18 5.93 -4.04 -0.02 1.16 16 19 N -0.73 -5.85 5.55 -61.40 -0.34 -6.19 16 20 C 0.59 6.42 7.81 -12.54 -0.10 6.33 16 21 O -0.53 -8.21 16.98 5.26 0.09 -8.12 16 22 C -0.23 -2.00 6.31 -103.28 -0.65 -2.65 16 23 C -0.16 -1.30 11.01 -37.46 -0.41 -1.71 16 24 C -0.04 -0.22 12.03 29.30 0.35 0.13 16 25 O -0.17 -1.09 10.52 7.65 0.08 -1.01 16 26 C 0.02 0.11 11.61 30.08 0.35 0.46 16 27 H 0.05 0.58 7.22 -51.93 -0.38 0.21 16 28 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.08 1.32 8.07 -51.93 -0.42 0.90 16 31 H 0.07 0.79 6.44 -51.93 -0.33 0.45 16 32 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 33 H 0.04 0.95 6.85 -51.93 -0.36 0.60 16 34 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 35 H 0.06 0.67 7.40 -51.93 -0.38 0.29 16 36 H 0.10 1.09 7.19 -51.92 -0.37 0.72 16 37 H 0.36 5.11 8.43 -39.29 -0.33 4.78 16 38 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 41 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.40 1.74 7.44 -40.82 -0.30 1.44 16 43 H 0.16 1.20 8.06 -52.48 -0.42 0.78 16 44 H 0.21 0.34 8.06 -52.49 -0.42 -0.08 16 45 H 0.21 0.25 7.47 -52.49 -0.39 -0.14 16 LS Contribution 383.33 15.07 5.78 5.78 Total: -1.00 -38.80 383.33 -6.67 -45.46 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -6.61 Total: 2.12 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: -0.72 Total: 6.28 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: -0.70 Total: -54.75 kcal Atomic # 8 Polarization: -22.11 SS G_CDS: 0.26 Total: -21.85 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.67 Total: 16.95 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -38.80 -6.67 -45.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123501171.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.862 kcal (2) G-P(sol) polarization free energy of solvation -38.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds