Wall clock time and date at job start Tue Mar 31 2020 14:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.44945 * 2 1 4 4 C 1.53046 * 109.46285 * 240.03844 * 2 1 3 5 5 C 1.53184 * 109.31561 * 178.61140 * 4 2 1 6 6 N 1.46924 * 108.77544 * 54.63527 * 5 4 2 7 7 C 1.34774 * 120.63123 * 126.36996 * 6 5 4 8 8 O 1.21500 * 120.00104 * 174.99686 * 7 6 5 9 9 C 1.48206 * 120.00063 * 354.99517 * 7 6 5 10 10 C 1.36320 * 126.38684 * 186.12553 * 9 7 6 11 11 C 1.42336 * 104.00901 * 179.97438 * 10 9 7 12 12 O 1.21976 * 127.15249 * 180.02562 * 11 10 9 13 13 N 1.34835 * 105.70429 * 0.02562 * 11 10 9 14 14 C 1.46501 * 124.56830 * 179.97438 * 13 11 10 15 15 O 1.20923 * 110.86269 * 359.72795 * 13 11 10 16 16 C 1.46924 * 118.73972 * 306.39138 * 6 5 4 17 17 C 1.53040 * 109.46273 * 119.97047 * 2 1 3 18 18 H 1.09001 * 109.49752 * 61.43264 * 17 2 1 19 19 C 1.52995 * 109.52099 * 301.35351 * 17 2 1 20 20 N 1.46501 * 109.46945 * 175.08042 * 19 17 2 21 21 C 1.36937 * 119.99909 * 180.02562 * 20 19 17 22 22 H 1.08000 * 120.00327 * 0.02562 * 21 20 19 23 23 C 1.38814 * 119.99815 * 180.02562 * 21 20 19 24 24 N 1.31622 * 120.00455 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 120.00019 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47081 * 89.99666 * 25 23 21 27 27 H 1.48500 * 109.47001 * 210.00111 * 25 23 21 28 28 H 1.48503 * 109.46884 * 329.99899 * 25 23 21 29 29 H 1.08997 * 109.47321 * 300.02776 * 1 2 3 30 30 H 1.09001 * 109.47253 * 60.03148 * 1 2 3 31 31 H 1.09005 * 109.46577 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.49350 * 58.66250 * 4 2 1 33 33 H 1.09000 * 109.52482 * 298.58290 * 4 2 1 34 34 H 1.09005 * 109.58830 * 294.84990 * 5 4 2 35 35 H 1.09002 * 109.70940 * 174.49337 * 5 4 2 36 36 H 1.07999 * 127.99393 * 359.97438 * 10 9 7 37 37 H 1.09001 * 109.46537 * 89.99740 * 14 13 11 38 38 H 1.08999 * 109.47309 * 210.00198 * 14 13 11 39 39 H 1.09000 * 109.47235 * 330.00087 * 14 13 11 40 40 H 1.08998 * 109.59219 * 293.82154 * 16 6 5 41 41 H 1.09007 * 109.58966 * 173.39400 * 16 6 5 42 42 H 1.08995 * 109.47541 * 295.08211 * 19 17 2 43 43 H 1.08997 * 109.47383 * 55.08467 * 19 17 2 44 44 H 0.96996 * 119.99899 * 359.97438 * 20 19 17 45 45 H 0.96996 * 120.00352 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0399 -0.7207 -1.2502 5 6 3.5714 -0.6884 -1.2644 6 7 4.0679 -1.2487 -0.0002 7 6 4.9615 -2.2576 -0.0003 8 8 5.4331 -2.6515 1.0479 9 6 5.3688 -2.8867 -1.2789 10 6 6.1660 -3.9831 -1.4229 11 6 6.2433 -4.1703 -2.8318 12 8 6.8557 -5.0414 -3.4267 13 7 5.4988 -3.1845 -3.3723 14 6 5.2957 -2.9892 -4.8099 15 8 5.0176 -2.4862 -2.5103 16 6 3.5714 -0.6886 1.2641 17 6 2.0399 -0.7208 1.2500 18 1 1.6979 -1.7557 1.2382 19 6 1.5028 -0.0197 2.4993 20 7 1.8938 -0.7775 3.6906 21 6 1.5226 -0.3387 4.9335 22 1 0.9413 0.5658 5.0356 23 6 1.8935 -1.0564 6.0623 24 7 2.6016 -2.1590 5.9381 25 14 1.3866 -0.4582 7.7579 26 1 0.0726 -1.0485 8.1186 27 1 2.4062 -0.8733 8.7545 28 1 1.2781 1.0228 7.7482 29 1 -0.3634 0.5142 0.8897 30 1 -0.3634 0.5133 -0.8903 31 1 -0.3633 -1.0277 0.0005 32 1 1.6573 -0.2205 -2.1399 33 1 1.6979 -1.7556 -1.2391 34 1 3.9143 0.3411 -1.3674 35 1 3.9438 -1.2828 -2.0987 36 1 6.6313 -4.5733 -0.6473 37 1 4.4167 -3.5476 -5.1317 38 1 5.1480 -1.9290 -5.0153 39 1 6.1713 -3.3458 -5.3523 40 1 3.9143 0.3409 1.3674 41 1 3.9418 -1.2846 2.0983 42 1 1.9164 0.9870 2.5572 43 1 0.4157 0.0367 2.4453 44 1 2.4149 -1.5904 3.5989 45 1 2.8604 -2.6607 6.7268 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132772911.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:16 Heat of formation + Delta-G solvation = 33.950811 kcal Electronic energy + Delta-G solvation = -28227.226636 eV Core-core repulsion = 24250.471260 eV Total energy + Delta-G solvation = -3976.755376 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.35337 -40.42945 -38.38860 -38.24121 -35.25362 -34.52127 -33.84814 -32.49218 -31.98635 -30.00458 -28.94899 -27.94673 -25.78862 -24.39291 -23.80847 -23.26976 -22.42571 -21.33850 -20.46572 -19.59071 -18.65772 -18.30973 -17.46882 -17.01712 -16.39052 -15.60270 -15.43406 -15.14648 -14.91801 -14.59468 -14.31639 -14.11908 -14.03063 -13.96954 -13.74513 -13.58788 -13.34691 -13.27555 -13.01398 -12.76103 -12.60442 -11.98326 -11.83385 -11.58944 -11.06789 -10.92081 -10.88623 -10.72154 -10.64877 -10.40538 -10.29366 -10.21970 -10.17628 -9.93619 -9.63433 -8.91051 -8.81721 -8.74355 -6.91297 -5.73890 -3.03917 0.34349 1.27386 2.37503 2.49547 2.83589 3.06243 3.44805 3.49579 3.51933 4.06355 4.39159 4.53334 4.60917 4.68798 4.69039 4.73888 4.77574 4.80314 4.99369 5.00090 5.13381 5.20562 5.48016 5.55497 5.56351 5.59563 5.61041 5.68567 5.76630 5.80898 5.86192 5.93282 6.03062 6.12727 6.23078 6.33705 6.40518 6.44677 6.73379 6.80693 7.04496 7.35151 7.67619 7.70907 7.80784 8.43745 9.54926 10.11765 10.45626 11.48341 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.017598 B = 0.003124 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.666020 B = 8961.577961 C =10283.127266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.085 4.085 3 H 0.073 0.927 4 C -0.128 4.128 5 C 0.096 3.904 6 N -0.594 5.594 7 C 0.593 3.407 8 O -0.484 6.484 9 C 0.037 3.963 10 C -0.237 4.237 11 C 0.483 3.517 12 O -0.525 6.525 13 N -0.460 5.460 14 C 0.107 3.893 15 O -0.005 6.005 16 C 0.120 3.880 17 C -0.103 4.103 18 H 0.076 0.924 19 C 0.159 3.841 20 N -0.733 5.733 21 C -0.243 4.243 22 H 0.070 0.930 23 C -0.012 4.012 24 N -0.929 5.929 25 Si 0.906 3.094 26 H -0.290 1.290 27 H -0.291 1.291 28 H -0.282 1.282 29 H 0.066 0.934 30 H 0.049 0.951 31 H 0.054 0.946 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.097 0.903 36 H 0.194 0.806 37 H 0.080 0.920 38 H 0.092 0.908 39 H 0.104 0.896 40 H 0.075 0.925 41 H 0.109 0.891 42 H 0.020 0.980 43 H 0.029 0.971 44 H 0.384 0.616 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.379 4.003 -24.159 24.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.104 4.104 3 H 0.092 0.908 4 C -0.166 4.166 5 C -0.027 4.027 6 N -0.327 5.327 7 C 0.376 3.624 8 O -0.357 6.357 9 C -0.020 4.020 10 C -0.262 4.262 11 C 0.281 3.719 12 O -0.406 6.406 13 N -0.226 5.226 14 C -0.030 4.030 15 O -0.014 6.014 16 C -0.001 4.001 17 C -0.123 4.123 18 H 0.095 0.905 19 C 0.031 3.969 20 N -0.378 5.378 21 C -0.374 4.374 22 H 0.088 0.912 23 C -0.208 4.208 24 N -0.577 5.577 25 Si 0.737 3.263 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.208 1.208 29 H 0.085 0.915 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.114 0.886 36 H 0.211 0.789 37 H 0.098 0.902 38 H 0.111 0.889 39 H 0.122 0.878 40 H 0.093 0.907 41 H 0.127 0.873 42 H 0.037 0.963 43 H 0.046 0.954 44 H 0.218 0.782 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 1.743 3.636 -24.015 24.351 hybrid contribution -0.167 0.011 0.922 0.937 sum 1.576 3.648 -23.094 23.433 Atomic orbital electron populations 1.21878 0.94719 1.02075 1.01846 1.21117 0.96218 0.99436 0.93673 0.90833 1.21987 0.93912 1.01897 0.98787 1.22255 0.95366 0.99738 0.85301 1.48160 1.41721 1.33703 1.09090 1.16943 0.80519 0.80242 0.84696 1.90969 1.53920 1.62077 1.28776 1.23627 0.97884 0.96855 0.83682 1.23363 1.04896 1.00325 0.97582 1.18333 0.81972 0.82936 0.88612 1.90962 1.45570 1.34583 1.69436 1.46230 1.46765 1.26451 1.03200 1.22108 1.04630 1.04293 0.71973 1.84231 1.61243 1.44725 1.11166 1.21948 0.94078 0.99693 0.84369 1.21754 0.93942 1.01095 0.95480 0.90512 1.20717 0.96966 0.94060 0.85150 1.42411 1.65389 1.29196 1.00825 1.19180 1.28015 1.06503 0.83722 0.91229 1.24755 1.00722 0.97503 0.97831 1.69662 1.42172 1.17263 1.28625 0.86216 0.77630 0.77906 0.84559 1.21770 1.21765 1.20799 0.91491 0.93145 0.92708 0.90507 0.91293 0.90384 0.88609 0.78912 0.90166 0.88938 0.87795 0.90651 0.87307 0.96252 0.95353 0.78159 0.93430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 8.81 37.16 0.33 -1.21 16 2 C -0.09 -0.91 2.23 -90.58 -0.20 -1.11 16 3 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 4 C -0.13 -1.09 5.36 -26.61 -0.14 -1.23 16 5 C 0.10 0.84 6.34 -3.72 -0.02 0.82 16 6 N -0.59 -7.46 2.97 -173.75 -0.52 -7.98 16 7 C 0.59 8.44 7.71 -12.17 -0.09 8.34 16 8 O -0.48 -8.83 16.33 5.37 0.09 -8.75 16 9 C 0.04 0.44 6.97 -36.18 -0.25 0.19 16 10 C -0.24 -2.96 10.94 -38.70 -0.42 -3.38 16 11 C 0.48 6.21 8.02 -14.66 -0.12 6.10 16 12 O -0.52 -8.33 17.84 4.94 0.09 -8.24 16 13 N -0.46 -4.38 3.68 -69.77 -0.26 -4.64 16 14 C 0.11 0.53 11.22 59.85 0.67 1.20 16 15 O -0.01 -0.05 7.38 16.85 0.12 0.07 16 16 C 0.12 1.80 5.50 -3.71 -0.02 1.77 16 17 C -0.10 -1.51 1.92 -90.50 -0.17 -1.68 16 18 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 19 C 0.16 2.96 5.41 -4.04 -0.02 2.93 16 20 N -0.73 -18.05 5.38 -59.91 -0.32 -18.37 16 21 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 22 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 23 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 24 N -0.93 -28.31 13.06 55.49 0.72 -27.59 16 25 Si 0.91 22.40 29.55 -169.99 -5.02 17.37 16 26 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 27 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 28 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 29 H 0.07 0.78 6.30 -51.93 -0.33 0.45 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.10 0.75 3.79 -54.98 -0.21 0.54 16 36 H 0.19 2.29 8.06 -52.49 -0.42 1.86 16 37 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 39 H 0.10 0.50 8.03 -51.93 -0.42 0.08 16 40 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 41 H 0.11 2.06 6.24 -51.92 -0.32 1.74 16 42 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.03 0.53 6.15 -51.93 -0.32 0.21 16 44 H 0.38 10.13 6.90 -40.82 -0.28 9.84 16 45 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 364.60 15.07 5.49 5.49 Total: -1.00 -34.92 364.60 -6.81 -41.74 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -6.50 Total: 5.43 kcal Atomic # 6 Polarization: 6.16 SS G_CDS: -0.72 Total: 5.44 kcal Atomic # 7 Polarization: -58.20 SS G_CDS: -0.37 Total: -58.57 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: 0.30 Total: -16.91 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.92 -6.81 -41.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132772911.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.688 kcal (2) G-P(sol) polarization free energy of solvation -34.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds