Wall clock time and date at job start Tue Mar 31 2020 14:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.44945 * 2 1 4 4 C 1.53046 * 109.46285 * 240.03844 * 2 1 3 5 5 C 1.53184 * 109.31561 * 178.61140 * 4 2 1 6 6 N 1.46924 * 108.77544 * 54.63527 * 5 4 2 7 7 C 1.34774 * 120.63123 * 126.36996 * 6 5 4 8 8 O 1.21500 * 120.00104 * 174.99686 * 7 6 5 9 9 C 1.48206 * 120.00063 * 354.99517 * 7 6 5 10 10 C 1.36320 * 126.38684 * 186.12553 * 9 7 6 11 11 C 1.42336 * 104.00901 * 179.97438 * 10 9 7 12 12 O 1.21976 * 127.15249 * 180.02562 * 11 10 9 13 13 N 1.34835 * 105.70429 * 0.02562 * 11 10 9 14 14 C 1.46501 * 124.56830 * 179.97438 * 13 11 10 15 15 O 1.20923 * 110.86269 * 359.72795 * 13 11 10 16 16 C 1.46924 * 118.73972 * 306.39138 * 6 5 4 17 17 C 1.53040 * 109.46273 * 119.97047 * 2 1 3 18 18 H 1.09001 * 109.49752 * 61.43264 * 17 2 1 19 19 C 1.52995 * 109.52099 * 301.35351 * 17 2 1 20 20 N 1.46501 * 109.46945 * 175.08042 * 19 17 2 21 21 C 1.36937 * 119.99909 * 180.02562 * 20 19 17 22 22 H 1.08000 * 120.00327 * 0.02562 * 21 20 19 23 23 C 1.38814 * 119.99815 * 180.02562 * 21 20 19 24 24 N 1.31622 * 120.00455 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 120.00019 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47081 * 89.99666 * 25 23 21 27 27 H 1.48500 * 109.47001 * 210.00111 * 25 23 21 28 28 H 1.48503 * 109.46884 * 329.99899 * 25 23 21 29 29 H 1.08997 * 109.47321 * 300.02776 * 1 2 3 30 30 H 1.09001 * 109.47253 * 60.03148 * 1 2 3 31 31 H 1.09005 * 109.46577 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.49350 * 58.66250 * 4 2 1 33 33 H 1.09000 * 109.52482 * 298.58290 * 4 2 1 34 34 H 1.09005 * 109.58830 * 294.84990 * 5 4 2 35 35 H 1.09002 * 109.70940 * 174.49337 * 5 4 2 36 36 H 1.07999 * 127.99393 * 359.97438 * 10 9 7 37 37 H 1.09001 * 109.46537 * 89.99740 * 14 13 11 38 38 H 1.08999 * 109.47309 * 210.00198 * 14 13 11 39 39 H 1.09000 * 109.47235 * 330.00087 * 14 13 11 40 40 H 1.08998 * 109.59219 * 293.82154 * 16 6 5 41 41 H 1.09007 * 109.58966 * 173.39400 * 16 6 5 42 42 H 1.08995 * 109.47541 * 295.08211 * 19 17 2 43 43 H 1.08997 * 109.47383 * 55.08467 * 19 17 2 44 44 H 0.96996 * 119.99899 * 359.97438 * 20 19 17 45 45 H 0.96996 * 120.00352 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0399 -0.7207 -1.2502 5 6 3.5714 -0.6884 -1.2644 6 7 4.0679 -1.2487 -0.0002 7 6 4.9615 -2.2576 -0.0003 8 8 5.4331 -2.6515 1.0479 9 6 5.3688 -2.8867 -1.2789 10 6 6.1660 -3.9831 -1.4229 11 6 6.2433 -4.1703 -2.8318 12 8 6.8557 -5.0414 -3.4267 13 7 5.4988 -3.1845 -3.3723 14 6 5.2957 -2.9892 -4.8099 15 8 5.0176 -2.4862 -2.5103 16 6 3.5714 -0.6886 1.2641 17 6 2.0399 -0.7208 1.2500 18 1 1.6979 -1.7557 1.2382 19 6 1.5028 -0.0197 2.4993 20 7 1.8938 -0.7775 3.6906 21 6 1.5226 -0.3387 4.9335 22 1 0.9413 0.5658 5.0356 23 6 1.8935 -1.0564 6.0623 24 7 2.6016 -2.1590 5.9381 25 14 1.3866 -0.4582 7.7579 26 1 0.0726 -1.0485 8.1186 27 1 2.4062 -0.8733 8.7545 28 1 1.2781 1.0228 7.7482 29 1 -0.3634 0.5142 0.8897 30 1 -0.3634 0.5133 -0.8903 31 1 -0.3633 -1.0277 0.0005 32 1 1.6573 -0.2205 -2.1399 33 1 1.6979 -1.7556 -1.2391 34 1 3.9143 0.3411 -1.3674 35 1 3.9438 -1.2828 -2.0987 36 1 6.6313 -4.5733 -0.6473 37 1 4.4167 -3.5476 -5.1317 38 1 5.1480 -1.9290 -5.0153 39 1 6.1713 -3.3458 -5.3523 40 1 3.9143 0.3409 1.3674 41 1 3.9418 -1.2846 2.0983 42 1 1.9164 0.9870 2.5572 43 1 0.4157 0.0367 2.4453 44 1 2.4149 -1.5904 3.5989 45 1 2.8604 -2.6607 6.7268 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132772911.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:16 Heat of formation + Delta-G solvation = 9.352513 kcal Electronic energy + Delta-G solvation = -28228.293298 eV Core-core repulsion = 24250.471260 eV Total energy + Delta-G solvation = -3977.822038 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -46.26933 -41.52930 -39.43035 -39.36079 -36.72351 -35.53674 -35.04633 -33.54154 -33.45814 -31.58092 -29.80792 -28.86366 -27.25579 -25.45301 -24.91522 -24.69356 -23.36203 -22.60924 -21.56193 -20.64208 -19.53522 -19.25308 -19.01353 -18.35592 -17.56056 -16.73239 -16.56469 -16.46004 -16.17641 -15.65696 -15.56782 -15.34807 -15.20369 -15.06590 -14.95742 -14.54209 -14.33085 -14.20337 -14.01416 -14.00989 -13.62260 -13.05340 -13.03123 -12.76970 -12.67346 -12.60011 -12.18568 -11.98524 -11.91973 -11.84960 -11.74774 -11.41860 -11.21938 -11.13181 -11.07909 -10.89809 -9.88012 -9.69199 -8.96629 -7.92473 -5.21902 -0.66384 0.43684 1.33208 1.47246 1.47355 1.49428 1.57791 1.77637 2.08944 2.57240 3.11677 3.41035 3.53305 3.69016 3.77829 3.81858 3.83186 3.98198 4.19030 4.23564 4.30422 4.37969 4.39554 4.51472 4.58415 4.62534 4.69171 4.71083 4.73883 4.81752 4.91964 4.96948 5.02283 5.08094 5.14902 5.26237 5.26784 5.35104 5.50590 5.51505 5.60476 5.99296 6.28677 6.39638 6.62999 6.86764 7.34644 8.12044 8.32697 9.30859 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.017598 B = 0.003124 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.666020 B = 8961.577961 C =10283.127266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.079 4.079 3 H 0.091 0.909 4 C -0.121 4.121 5 C 0.092 3.908 6 N -0.587 5.587 7 C 0.591 3.409 8 O -0.537 6.537 9 C 0.045 3.955 10 C -0.250 4.250 11 C 0.474 3.526 12 O -0.564 6.564 13 N -0.446 5.446 14 C 0.093 3.907 15 O 0.022 5.978 16 C 0.126 3.874 17 C -0.091 4.091 18 H 0.054 0.946 19 C 0.157 3.843 20 N -0.748 5.748 21 C -0.242 4.242 22 H 0.079 0.921 23 C -0.079 4.079 24 N -0.971 5.971 25 Si 0.973 3.027 26 H -0.287 1.287 27 H -0.299 1.299 28 H -0.266 1.266 29 H 0.049 0.951 30 H 0.080 0.920 31 H 0.044 0.956 32 H 0.117 0.883 33 H 0.059 0.941 34 H 0.106 0.894 35 H 0.110 0.890 36 H 0.189 0.811 37 H 0.099 0.901 38 H 0.129 0.871 39 H 0.105 0.895 40 H 0.087 0.913 41 H 0.060 0.940 42 H 0.028 0.972 43 H 0.034 0.966 44 H 0.371 0.629 45 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.137 6.635 -27.126 27.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.098 4.098 3 H 0.109 0.891 4 C -0.159 4.159 5 C -0.029 4.029 6 N -0.318 5.318 7 C 0.376 3.624 8 O -0.415 6.415 9 C -0.014 4.014 10 C -0.275 4.275 11 C 0.272 3.728 12 O -0.449 6.449 13 N -0.209 5.209 14 C -0.041 4.041 15 O 0.013 5.987 16 C 0.004 3.996 17 C -0.110 4.110 18 H 0.072 0.928 19 C 0.030 3.970 20 N -0.391 5.391 21 C -0.374 4.374 22 H 0.097 0.903 23 C -0.271 4.271 24 N -0.622 5.622 25 Si 0.802 3.198 26 H -0.215 1.215 27 H -0.226 1.226 28 H -0.191 1.191 29 H 0.069 0.931 30 H 0.098 0.902 31 H 0.063 0.937 32 H 0.135 0.865 33 H 0.078 0.922 34 H 0.124 0.876 35 H 0.127 0.873 36 H 0.206 0.794 37 H 0.117 0.883 38 H 0.147 0.853 39 H 0.123 0.877 40 H 0.105 0.895 41 H 0.079 0.921 42 H 0.045 0.955 43 H 0.052 0.948 44 H 0.202 0.798 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 0.160 6.356 -27.086 27.822 hybrid contribution 0.219 -0.701 1.725 1.874 sum 0.379 5.655 -25.361 25.987 Atomic orbital electron populations 1.21857 0.94283 1.01689 1.02502 1.21115 0.96490 0.99934 0.92246 0.89116 1.21986 0.93311 1.01581 0.98985 1.22625 0.95733 1.01197 0.83330 1.48219 1.40796 1.32908 1.09829 1.17149 0.80325 0.80202 0.84764 1.90946 1.55929 1.63715 1.30863 1.22992 0.98026 0.96570 0.83818 1.23432 1.05303 1.00770 0.97996 1.18298 0.82517 0.83414 0.88532 1.90936 1.47591 1.36322 1.70015 1.46554 1.44878 1.24944 1.04502 1.22643 1.05606 1.07154 0.68733 1.84250 1.60202 1.43912 1.10346 1.21658 0.94306 0.99318 0.84267 1.21609 0.93450 0.99981 0.95998 0.92763 1.20925 0.97295 0.94001 0.84742 1.42680 1.65175 1.29268 1.01993 1.19643 1.26553 1.06179 0.84994 0.90279 1.25601 1.01684 0.98045 1.01742 1.69846 1.44333 1.18928 1.29076 0.85150 0.76799 0.78141 0.79736 1.21464 1.22588 1.19073 0.93148 0.90156 0.93652 0.86468 0.92226 0.87599 0.87292 0.79354 0.88264 0.85284 0.87654 0.89466 0.92091 0.95451 0.94788 0.79751 0.94193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 8.81 71.98 0.63 -1.95 16 2 C -0.08 -1.43 2.23 -10.77 -0.02 -1.45 16 3 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 4 C -0.12 -1.51 5.36 30.67 0.16 -1.35 16 5 C 0.09 1.24 6.34 86.36 0.55 1.79 16 6 N -0.59 -14.13 2.97 -821.93 -2.44 -16.58 16 7 C 0.59 17.08 7.71 86.89 0.67 17.75 16 8 O -0.54 -20.96 16.33 -3.71 -0.06 -21.03 16 9 C 0.04 1.03 6.97 24.47 0.17 1.20 16 10 C -0.25 -6.38 10.94 22.84 0.25 -6.13 16 11 C 0.47 11.96 8.02 85.25 0.68 12.65 16 12 O -0.56 -18.07 17.84 -5.24 -0.09 -18.16 16 13 N -0.45 -7.38 3.68 -492.73 -1.82 -9.19 16 14 C 0.09 0.58 11.22 127.77 1.43 2.01 16 15 O 0.02 0.36 7.38 70.45 0.52 0.88 16 16 C 0.13 3.82 5.50 86.36 0.48 4.29 16 17 C -0.09 -2.61 1.92 -10.72 -0.02 -2.63 16 18 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 19 C 0.16 5.79 5.41 86.38 0.47 6.26 16 20 N -0.75 -37.83 5.38 -343.47 -1.85 -39.68 16 21 C -0.24 -13.49 9.99 84.03 0.84 -12.65 16 22 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 23 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 24 N -0.97 -61.44 13.06 21.65 0.28 -61.16 16 25 Si 0.97 46.75 29.55 68.60 2.03 48.78 16 26 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 27 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 28 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 29 H 0.05 1.06 6.30 -2.39 -0.02 1.04 16 30 H 0.08 0.97 8.14 -2.39 -0.02 0.96 16 31 H 0.04 0.89 8.14 -2.38 -0.02 0.87 16 32 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.11 0.98 8.14 -2.38 -0.02 0.96 16 35 H 0.11 1.20 3.79 -50.75 -0.19 1.01 16 36 H 0.19 4.85 8.06 -2.91 -0.02 4.82 16 37 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 38 H 0.13 -0.08 8.14 -2.39 -0.02 -0.10 16 39 H 0.10 0.73 8.03 -2.39 -0.02 0.71 16 40 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 41 H 0.06 2.48 6.24 -2.38 -0.01 2.46 16 42 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.03 1.25 6.15 -2.39 -0.01 1.23 16 44 H 0.37 20.60 6.90 -92.71 -0.64 19.96 16 45 H 0.25 15.38 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -80.92 364.60 3.52 -77.40 By element: Atomic # 1 Polarization: 22.89 SS G_CDS: 0.19 Total: 23.08 kcal Atomic # 6 Polarization: 8.90 SS G_CDS: 6.76 Total: 15.66 kcal Atomic # 7 Polarization: -120.78 SS G_CDS: -5.82 Total: -126.60 kcal Atomic # 8 Polarization: -38.68 SS G_CDS: 0.37 Total: -38.31 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.78 kcal Total: -80.92 3.52 -77.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132772911.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.749 kcal (2) G-P(sol) polarization free energy of solvation -80.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds