Wall clock time and date at job start Tue Mar 31 2020 14:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.45362 * 2 1 4 4 C 1.53070 * 109.33510 * 240.11319 * 2 1 3 5 5 C 1.53189 * 109.29615 * 301.13267 * 4 2 1 6 6 N 1.46928 * 108.89573 * 305.58039 * 5 4 2 7 7 C 1.34778 * 120.63367 * 233.55779 * 6 5 4 8 8 O 1.21497 * 119.99940 * 172.96598 * 7 6 5 9 9 C 1.48195 * 119.99745 * 352.97447 * 7 6 5 10 10 C 1.36321 * 126.38394 * 173.07269 * 9 7 6 11 11 C 1.42343 * 104.01026 * 179.97438 * 10 9 7 12 12 O 1.21975 * 127.14979 * 180.02562 * 11 10 9 13 13 N 1.34836 * 105.70226 * 0.33215 * 11 10 9 14 14 C 1.46494 * 124.56887 * 179.76050 * 13 11 10 15 15 O 1.20922 * 110.86441 * 359.78752 * 13 11 10 16 16 C 1.46931 * 118.73434 * 53.53556 * 6 5 4 17 17 C 1.53041 * 109.46000 * 119.97301 * 2 1 3 18 18 H 1.08997 * 109.49685 * 178.59899 * 17 2 1 19 19 C 1.53001 * 109.49357 * 298.69064 * 17 2 1 20 20 N 1.46502 * 109.47064 * 184.83680 * 19 17 2 21 21 C 1.36939 * 120.00592 * 179.97438 * 20 19 17 22 22 H 1.08003 * 119.99164 * 0.02562 * 21 20 19 23 23 C 1.38806 * 120.00222 * 180.02562 * 21 20 19 24 24 N 1.31620 * 120.00069 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99821 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.46999 * 60.00071 * 25 23 21 27 27 H 1.48499 * 109.47039 * 179.97438 * 25 23 21 28 28 H 1.48502 * 109.47005 * 299.99940 * 25 23 21 29 29 H 1.08992 * 109.47267 * 300.02634 * 1 2 3 30 30 H 1.08999 * 109.47321 * 60.03059 * 1 2 3 31 31 H 1.09001 * 109.46930 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.39078 * 181.25827 * 4 2 1 33 33 H 1.08998 * 109.62438 * 61.15531 * 4 2 1 34 34 H 1.09001 * 109.59055 * 185.72099 * 5 4 2 35 35 H 1.09002 * 109.58760 * 65.44125 * 5 4 2 36 36 H 1.08000 * 127.99432 * 359.97438 * 10 9 7 37 37 H 1.09000 * 109.47538 * 180.02562 * 14 13 11 38 38 H 1.09004 * 109.47343 * 300.00026 * 14 13 11 39 39 H 1.09001 * 109.47130 * 59.99699 * 14 13 11 40 40 H 1.08995 * 109.58810 * 66.18431 * 16 6 5 41 41 H 1.09001 * 109.58186 * 186.60492 * 16 6 5 42 42 H 1.08998 * 109.47492 * 304.84017 * 19 17 2 43 43 H 1.09000 * 109.47524 * 64.84159 * 19 17 2 44 44 H 0.97001 * 119.99786 * 0.02562 * 20 19 17 45 45 H 0.96999 * 119.99906 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0368 -0.7197 -1.2523 5 6 1.4991 -2.1541 -1.2643 6 7 1.8621 -2.8089 -0.0001 7 6 2.5157 -3.9876 -0.0002 8 8 2.9229 -4.4565 1.0440 9 6 2.7379 -4.7115 -1.2741 10 6 3.4898 -5.8357 -1.4448 11 6 3.3753 -6.1191 -2.8351 12 8 3.8879 -7.0440 -3.4430 13 7 2.5880 -5.1487 -3.3416 14 6 2.2039 -5.0411 -4.7512 15 8 2.2421 -4.3788 -2.4756 16 6 1.4993 -2.1542 1.2642 17 6 2.0399 -0.7209 1.2500 18 1 3.1296 -0.7431 1.2381 19 6 1.5571 0.0194 2.4989 20 7 2.1395 -0.6024 3.6908 21 6 1.8486 -0.1062 4.9336 22 1 1.1894 0.7433 5.0350 23 6 2.4008 -0.6950 6.0627 24 7 3.2037 -1.7306 5.9390 25 14 2.0034 -0.0186 7.7580 26 1 0.5390 -0.0979 7.9917 27 1 2.7127 -0.8182 8.7888 28 1 2.4420 1.3978 7.8410 29 1 -0.3633 0.5142 0.8897 30 1 -0.3634 0.5133 -0.8902 31 1 -0.3633 -1.0277 0.0005 32 1 3.1266 -0.7399 -1.2420 33 1 1.6907 -0.1939 -2.1421 34 1 1.9375 -2.7018 -2.0986 35 1 0.4142 -2.1367 -1.3685 36 1 4.0443 -6.3845 -0.6979 37 1 1.5660 -4.1680 -4.8885 38 1 3.0988 -4.9368 -5.3647 39 1 1.6616 -5.9384 -5.0495 40 1 0.4144 -2.1346 1.3674 41 1 1.9379 -2.7019 2.0983 42 1 1.8670 1.0630 2.4453 43 1 0.4699 -0.0343 2.5557 44 1 2.7318 -1.3651 3.5996 45 1 3.5893 -2.1423 6.7281 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132772912.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:20 Heat of formation + Delta-G solvation = 34.328644 kcal Electronic energy + Delta-G solvation = -28330.332442 eV Core-core repulsion = 24353.593451 eV Total energy + Delta-G solvation = -3976.738992 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.36145 -40.54481 -38.39460 -38.35383 -35.18671 -34.53099 -33.68267 -32.48413 -31.97803 -30.01942 -28.64000 -27.67754 -25.87834 -25.08818 -23.86693 -23.22443 -22.91917 -21.28745 -20.36165 -18.88709 -18.68009 -18.02516 -17.43743 -16.98771 -16.37854 -15.62086 -15.39604 -15.32632 -15.02666 -14.93447 -14.33991 -14.13223 -14.02394 -13.84087 -13.73444 -13.64235 -13.43696 -13.31395 -13.06903 -12.78641 -12.52860 -11.98126 -11.77178 -11.34096 -11.17205 -10.95287 -10.84088 -10.74464 -10.63274 -10.38709 -10.32074 -10.23214 -10.19669 -9.95437 -9.62960 -8.87319 -8.81231 -8.70117 -6.91071 -5.73094 -3.03301 0.33884 1.28596 2.37031 2.49974 2.82058 3.08019 3.45485 3.49711 3.51445 4.08486 4.36765 4.53335 4.61238 4.69758 4.70668 4.72541 4.78643 4.81490 4.98242 5.04103 5.12575 5.19864 5.40680 5.52069 5.55814 5.59512 5.60144 5.68507 5.74615 5.76742 5.83757 5.93543 6.01860 6.22718 6.24666 6.26154 6.39021 6.48728 6.70511 6.82011 7.05839 7.34355 7.66848 7.70858 7.79933 8.44554 9.55587 10.12562 10.46494 11.49014 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.018676 B = 0.003096 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.893521 B = 9041.451286 C =10327.593988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.086 4.086 3 H 0.077 0.923 4 C -0.127 4.127 5 C 0.097 3.903 6 N -0.594 5.594 7 C 0.593 3.407 8 O -0.483 6.483 9 C 0.037 3.963 10 C -0.238 4.238 11 C 0.483 3.517 12 O -0.524 6.524 13 N -0.460 5.460 14 C 0.109 3.891 15 O -0.005 6.005 16 C 0.119 3.881 17 C -0.103 4.103 18 H 0.077 0.923 19 C 0.161 3.839 20 N -0.734 5.734 21 C -0.244 4.244 22 H 0.069 0.931 23 C -0.011 4.011 24 N -0.929 5.929 25 Si 0.906 3.094 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 H 0.065 0.935 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.194 0.806 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.077 0.923 41 H 0.108 0.892 42 H 0.022 0.978 43 H 0.024 0.976 44 H 0.385 0.615 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.681 -0.854 -24.044 24.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.105 4.105 3 H 0.095 0.905 4 C -0.166 4.166 5 C -0.026 4.026 6 N -0.326 5.326 7 C 0.376 3.624 8 O -0.356 6.356 9 C -0.020 4.020 10 C -0.262 4.262 11 C 0.281 3.719 12 O -0.404 6.404 13 N -0.225 5.225 14 C -0.028 4.028 15 O -0.014 6.014 16 C -0.002 4.002 17 C -0.122 4.122 18 H 0.095 0.905 19 C 0.033 3.967 20 N -0.378 5.378 21 C -0.375 4.375 22 H 0.087 0.913 23 C -0.208 4.208 24 N -0.577 5.577 25 Si 0.737 3.263 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.213 1.213 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.109 0.891 35 H 0.097 0.903 36 H 0.211 0.789 37 H 0.116 0.884 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.096 0.904 41 H 0.126 0.874 42 H 0.040 0.960 43 H 0.042 0.958 44 H 0.219 0.781 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.448 -1.324 -23.900 24.549 hybrid contribution 0.027 0.163 0.914 0.929 sum -5.421 -1.161 -22.986 23.645 Atomic orbital electron populations 1.22002 0.95111 1.01984 1.02008 1.21104 0.96117 0.99601 0.93674 0.90500 1.21949 1.01359 0.94470 0.98790 1.22161 1.01081 0.94123 0.85221 1.48132 1.55621 1.19836 1.09058 1.16921 0.79592 0.81274 0.84638 1.90975 1.48853 1.66833 1.28937 1.23602 0.96870 0.97108 0.84424 1.23370 1.05836 0.99321 0.97714 1.18328 0.81460 0.83555 0.88578 1.90963 1.50844 1.30888 1.67722 1.46196 1.48194 1.23289 1.04844 1.22098 1.02770 1.04875 0.73013 1.84238 1.63997 1.40397 1.12794 1.21963 1.00483 0.93321 0.84406 1.21709 1.01139 0.93973 0.95422 0.90505 1.20675 0.96051 0.94785 0.85196 1.42415 1.57089 1.37548 1.00787 1.19136 1.23596 1.11048 0.83743 0.91292 1.24753 0.99950 0.98254 0.97822 1.69656 1.35381 1.23956 1.28716 0.86290 0.77637 0.78011 0.84340 1.21293 1.21691 1.21324 0.91608 0.93031 0.92485 0.91334 0.90466 0.89083 0.90321 0.78911 0.88417 0.89277 0.89323 0.90438 0.87388 0.96025 0.95840 0.78104 0.93377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 8.11 37.16 0.30 -1.19 16 2 C -0.09 -0.92 2.71 -90.56 -0.25 -1.16 16 3 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 4 C -0.13 -1.09 5.63 -26.60 -0.15 -1.24 16 5 C 0.10 0.85 5.67 -3.71 -0.02 0.83 16 6 N -0.59 -7.44 2.97 -173.75 -0.52 -7.95 16 7 C 0.59 8.41 7.70 -12.17 -0.09 8.32 16 8 O -0.48 -8.83 16.33 5.37 0.09 -8.75 16 9 C 0.04 0.44 6.88 -36.18 -0.25 0.19 16 10 C -0.24 -2.95 10.94 -38.69 -0.42 -3.37 16 11 C 0.48 6.18 8.02 -14.65 -0.12 6.06 16 12 O -0.52 -8.31 17.92 4.94 0.09 -8.22 16 13 N -0.46 -4.34 3.68 -69.77 -0.26 -4.60 16 14 C 0.11 0.53 11.18 59.84 0.67 1.20 16 15 O 0.00 -0.05 7.55 16.83 0.13 0.08 16 16 C 0.12 1.78 5.06 -3.71 -0.02 1.76 16 17 C -0.10 -1.52 2.16 -90.50 -0.20 -1.71 16 18 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 19 C 0.16 3.01 5.19 -4.04 -0.02 2.99 16 20 N -0.73 -18.13 5.38 -59.91 -0.32 -18.45 16 21 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 22 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 23 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 24 N -0.93 -28.37 13.06 55.49 0.72 -27.65 16 25 Si 0.91 22.42 29.55 -169.99 -5.02 17.40 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 27 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 28 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 29 H 0.06 0.72 6.57 -51.93 -0.34 0.38 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.55 4.98 -51.93 -0.26 0.29 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.09 0.71 4.24 -52.80 -0.22 0.49 16 35 H 0.08 0.59 6.70 -51.93 -0.35 0.25 16 36 H 0.19 2.27 8.06 -52.49 -0.42 1.85 16 37 H 0.10 0.20 8.14 -51.93 -0.42 -0.22 16 38 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.08 1.09 6.69 -51.93 -0.35 0.75 16 41 H 0.11 2.05 6.20 -51.93 -0.32 1.73 16 42 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.02 0.44 6.72 -51.93 -0.35 0.09 16 44 H 0.38 10.19 6.89 -40.82 -0.28 9.91 16 45 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 358.98 15.07 5.41 5.41 Total: -1.00 -35.02 358.98 -6.74 -41.76 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -6.25 Total: 5.62 kcal Atomic # 6 Polarization: 6.16 SS G_CDS: -0.81 Total: 5.35 kcal Atomic # 7 Polarization: -58.28 SS G_CDS: -0.37 Total: -58.65 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: 0.30 Total: -16.88 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.02 -6.74 -41.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132772912.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.091 kcal (2) G-P(sol) polarization free energy of solvation -35.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds