Wall clock time and date at job start Tue Mar 31 2020 14:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.45362 * 2 1 4 4 C 1.53070 * 109.33510 * 240.11319 * 2 1 3 5 5 C 1.53189 * 109.29615 * 301.13267 * 4 2 1 6 6 N 1.46928 * 108.89573 * 305.58039 * 5 4 2 7 7 C 1.34778 * 120.63367 * 233.55779 * 6 5 4 8 8 O 1.21497 * 119.99940 * 172.96598 * 7 6 5 9 9 C 1.48195 * 119.99745 * 352.97447 * 7 6 5 10 10 C 1.36321 * 126.38394 * 173.07269 * 9 7 6 11 11 C 1.42343 * 104.01026 * 179.97438 * 10 9 7 12 12 O 1.21975 * 127.14979 * 180.02562 * 11 10 9 13 13 N 1.34836 * 105.70226 * 0.33215 * 11 10 9 14 14 C 1.46494 * 124.56887 * 179.76050 * 13 11 10 15 15 O 1.20922 * 110.86441 * 359.78752 * 13 11 10 16 16 C 1.46931 * 118.73434 * 53.53556 * 6 5 4 17 17 C 1.53041 * 109.46000 * 119.97301 * 2 1 3 18 18 H 1.08997 * 109.49685 * 178.59899 * 17 2 1 19 19 C 1.53001 * 109.49357 * 298.69064 * 17 2 1 20 20 N 1.46502 * 109.47064 * 184.83680 * 19 17 2 21 21 C 1.36939 * 120.00592 * 179.97438 * 20 19 17 22 22 H 1.08003 * 119.99164 * 0.02562 * 21 20 19 23 23 C 1.38806 * 120.00222 * 180.02562 * 21 20 19 24 24 N 1.31620 * 120.00069 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99821 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.46999 * 60.00071 * 25 23 21 27 27 H 1.48499 * 109.47039 * 179.97438 * 25 23 21 28 28 H 1.48502 * 109.47005 * 299.99940 * 25 23 21 29 29 H 1.08992 * 109.47267 * 300.02634 * 1 2 3 30 30 H 1.08999 * 109.47321 * 60.03059 * 1 2 3 31 31 H 1.09001 * 109.46930 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.39078 * 181.25827 * 4 2 1 33 33 H 1.08998 * 109.62438 * 61.15531 * 4 2 1 34 34 H 1.09001 * 109.59055 * 185.72099 * 5 4 2 35 35 H 1.09002 * 109.58760 * 65.44125 * 5 4 2 36 36 H 1.08000 * 127.99432 * 359.97438 * 10 9 7 37 37 H 1.09000 * 109.47538 * 180.02562 * 14 13 11 38 38 H 1.09004 * 109.47343 * 300.00026 * 14 13 11 39 39 H 1.09001 * 109.47130 * 59.99699 * 14 13 11 40 40 H 1.08995 * 109.58810 * 66.18431 * 16 6 5 41 41 H 1.09001 * 109.58186 * 186.60492 * 16 6 5 42 42 H 1.08998 * 109.47492 * 304.84017 * 19 17 2 43 43 H 1.09000 * 109.47524 * 64.84159 * 19 17 2 44 44 H 0.97001 * 119.99786 * 0.02562 * 20 19 17 45 45 H 0.96999 * 119.99906 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0368 -0.7197 -1.2523 5 6 1.4991 -2.1541 -1.2643 6 7 1.8621 -2.8089 -0.0001 7 6 2.5157 -3.9876 -0.0002 8 8 2.9229 -4.4565 1.0440 9 6 2.7379 -4.7115 -1.2741 10 6 3.4898 -5.8357 -1.4448 11 6 3.3753 -6.1191 -2.8351 12 8 3.8879 -7.0440 -3.4430 13 7 2.5880 -5.1487 -3.3416 14 6 2.2039 -5.0411 -4.7512 15 8 2.2421 -4.3788 -2.4756 16 6 1.4993 -2.1542 1.2642 17 6 2.0399 -0.7209 1.2500 18 1 3.1296 -0.7431 1.2381 19 6 1.5571 0.0194 2.4989 20 7 2.1395 -0.6024 3.6908 21 6 1.8486 -0.1062 4.9336 22 1 1.1894 0.7433 5.0350 23 6 2.4008 -0.6950 6.0627 24 7 3.2037 -1.7306 5.9390 25 14 2.0034 -0.0186 7.7580 26 1 0.5390 -0.0979 7.9917 27 1 2.7127 -0.8182 8.7888 28 1 2.4420 1.3978 7.8410 29 1 -0.3633 0.5142 0.8897 30 1 -0.3634 0.5133 -0.8902 31 1 -0.3633 -1.0277 0.0005 32 1 3.1266 -0.7399 -1.2420 33 1 1.6907 -0.1939 -2.1421 34 1 1.9375 -2.7018 -2.0986 35 1 0.4142 -2.1367 -1.3685 36 1 4.0443 -6.3845 -0.6979 37 1 1.5660 -4.1680 -4.8885 38 1 3.0988 -4.9368 -5.3647 39 1 1.6616 -5.9384 -5.0495 40 1 0.4144 -2.1346 1.3674 41 1 1.9379 -2.7019 2.0983 42 1 1.8670 1.0630 2.4453 43 1 0.4699 -0.0343 2.5557 44 1 2.7318 -1.3651 3.5996 45 1 3.5893 -2.1423 6.7281 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132772912.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:19 Heat of formation + Delta-G solvation = 9.511637 kcal Electronic energy + Delta-G solvation = -28331.408589 eV Core-core repulsion = 24353.593451 eV Total energy + Delta-G solvation = -3977.815138 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -46.27335 -41.63612 -39.52049 -39.38511 -36.71094 -35.52867 -34.88103 -33.52543 -33.44680 -31.59385 -29.43436 -28.65458 -27.23939 -26.13852 -24.99261 -24.71058 -23.87130 -22.59500 -21.43789 -19.97529 -19.56009 -19.05404 -18.81958 -18.34063 -17.53375 -16.77141 -16.59324 -16.40044 -16.33986 -15.92908 -15.70744 -15.38415 -15.10675 -15.05080 -14.91764 -14.61023 -14.50456 -14.26803 -14.11084 -13.78695 -13.64862 -13.03094 -12.90121 -12.82258 -12.62892 -12.46675 -12.18437 -12.03362 -11.88624 -11.79721 -11.75346 -11.42351 -11.24567 -11.14352 -11.12817 -10.89469 -9.80493 -9.67942 -8.97459 -7.92235 -5.22068 -0.66580 0.45344 1.33347 1.47181 1.47575 1.50698 1.56948 1.76439 2.10121 2.57377 3.13365 3.40889 3.53737 3.69436 3.77799 3.82156 3.85424 4.02806 4.18018 4.24078 4.30667 4.36215 4.39329 4.47104 4.56885 4.62452 4.67168 4.69147 4.75157 4.80075 4.89219 4.93909 5.02678 5.12365 5.18470 5.26775 5.31279 5.35277 5.44120 5.51361 5.63996 6.00572 6.28601 6.39317 6.63524 6.84420 7.34546 8.11890 8.32760 9.30849 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.018676 B = 0.003096 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.893521 B = 9041.451286 C =10327.593988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.080 4.080 3 H 0.082 0.918 4 C -0.121 4.121 5 C 0.091 3.909 6 N -0.586 5.586 7 C 0.592 3.408 8 O -0.537 6.537 9 C 0.045 3.955 10 C -0.250 4.250 11 C 0.473 3.527 12 O -0.563 6.563 13 N -0.445 5.445 14 C 0.095 3.905 15 O 0.023 5.977 16 C 0.127 3.873 17 C -0.092 4.092 18 H 0.053 0.947 19 C 0.160 3.840 20 N -0.749 5.749 21 C -0.244 4.244 22 H 0.079 0.921 23 C -0.078 4.078 24 N -0.971 5.971 25 Si 0.974 3.026 26 H -0.276 1.276 27 H -0.299 1.299 28 H -0.276 1.276 29 H 0.049 0.951 30 H 0.081 0.919 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.117 0.883 34 H 0.107 0.893 35 H 0.105 0.895 36 H 0.189 0.811 37 H 0.136 0.864 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.090 0.910 41 H 0.059 0.941 42 H 0.024 0.976 43 H 0.034 0.966 44 H 0.371 0.629 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.860 1.269 -26.967 28.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.099 4.099 3 H 0.101 0.899 4 C -0.159 4.159 5 C -0.029 4.029 6 N -0.317 5.317 7 C 0.376 3.624 8 O -0.414 6.414 9 C -0.013 4.013 10 C -0.275 4.275 11 C 0.272 3.728 12 O -0.448 6.448 13 N -0.207 5.207 14 C -0.039 4.039 15 O 0.012 5.988 16 C 0.005 3.995 17 C -0.112 4.112 18 H 0.072 0.928 19 C 0.033 3.967 20 N -0.392 5.392 21 C -0.376 4.376 22 H 0.097 0.903 23 C -0.270 4.270 24 N -0.622 5.622 25 Si 0.803 3.197 26 H -0.202 1.202 27 H -0.225 1.225 28 H -0.202 1.202 29 H 0.068 0.932 30 H 0.100 0.900 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.136 0.864 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.207 0.793 37 H 0.154 0.846 38 H 0.118 0.882 39 H 0.116 0.884 40 H 0.108 0.892 41 H 0.078 0.922 42 H 0.042 0.958 43 H 0.052 0.948 44 H 0.203 0.797 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -7.697 0.886 -26.925 28.018 hybrid contribution 0.625 -0.390 1.706 1.858 sum -7.072 0.496 -25.219 26.197 Atomic orbital electron populations 1.21985 0.93739 1.02332 1.02758 1.21090 0.97138 0.99473 0.92219 0.89937 1.21958 1.00888 0.94058 0.98990 1.22539 1.02874 0.94157 0.83356 1.48186 1.54531 1.19214 1.09755 1.17122 0.79054 0.81522 0.84712 1.90954 1.51130 1.68239 1.31083 1.22943 0.97232 0.96652 0.84506 1.23439 1.06217 0.99725 0.98125 1.18295 0.82092 0.83943 0.88485 1.90937 1.52833 1.32616 1.68373 1.46516 1.46368 1.21825 1.06004 1.22643 1.04180 1.07162 0.69963 1.84253 1.62837 1.39682 1.11983 1.21658 1.00608 0.92932 0.84292 1.21574 0.99686 0.93927 0.95991 0.92840 1.20872 0.96210 0.94811 0.84796 1.42686 1.57121 1.37380 1.01971 1.19611 1.22426 1.10559 0.85009 0.90302 1.25610 1.00634 0.99004 1.01780 1.69846 1.37313 1.25841 1.29157 0.85210 0.77649 0.77436 0.79452 1.20181 1.22545 1.20241 0.93228 0.89982 0.92296 0.92230 0.86434 0.87615 0.87687 0.79347 0.84615 0.88242 0.88406 0.89232 0.92215 0.95828 0.94773 0.79717 0.94169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 8.11 71.98 0.58 -1.75 16 2 C -0.08 -1.48 2.71 -10.76 -0.03 -1.51 16 3 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 4 C -0.12 -1.56 5.63 30.68 0.17 -1.39 16 5 C 0.09 1.26 5.67 86.36 0.49 1.75 16 6 N -0.59 -14.15 2.97 -821.93 -2.44 -16.60 16 7 C 0.59 17.08 7.70 86.89 0.67 17.75 16 8 O -0.54 -21.06 16.33 -3.71 -0.06 -21.12 16 9 C 0.05 1.04 6.88 24.47 0.17 1.21 16 10 C -0.25 -6.32 10.94 22.84 0.25 -6.07 16 11 C 0.47 11.86 8.02 85.25 0.68 12.54 16 12 O -0.56 -17.98 17.92 -5.23 -0.09 -18.07 16 13 N -0.44 -7.26 3.68 -492.74 -1.82 -9.08 16 14 C 0.09 0.57 11.18 127.77 1.43 2.00 16 15 O 0.02 0.36 7.55 70.39 0.53 0.89 16 16 C 0.13 3.85 5.06 86.36 0.44 4.29 16 17 C -0.09 -2.69 2.16 -10.72 -0.02 -2.72 16 18 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 19 C 0.16 5.96 5.19 86.38 0.45 6.41 16 20 N -0.75 -38.13 5.38 -343.45 -1.85 -39.97 16 21 C -0.24 -13.69 9.99 84.03 0.84 -12.85 16 22 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 23 C -0.08 -4.58 5.50 84.86 0.47 -4.11 16 24 N -0.97 -61.60 13.06 21.65 0.28 -61.32 16 25 Si 0.97 46.79 29.55 68.60 2.03 48.82 16 26 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 27 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 28 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 29 H 0.05 0.94 6.57 -2.39 -0.02 0.92 16 30 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.06 0.89 4.98 -2.39 -0.01 0.88 16 32 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.11 1.17 4.24 -16.11 -0.07 1.10 16 35 H 0.11 1.02 6.70 -2.39 -0.02 1.00 16 36 H 0.19 4.81 8.06 -2.91 -0.02 4.78 16 37 H 0.14 -0.18 8.14 -2.39 -0.02 -0.20 16 38 H 0.10 0.49 8.14 -2.38 -0.02 0.47 16 39 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 40 H 0.09 2.48 6.69 -2.39 -0.02 2.46 16 41 H 0.06 2.44 6.20 -2.39 -0.01 2.42 16 42 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.03 1.23 6.72 -2.39 -0.02 1.21 16 44 H 0.37 20.77 6.89 -92.71 -0.64 20.13 16 45 H 0.25 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -81.19 358.98 3.50 -77.70 By element: Atomic # 1 Polarization: 22.88 SS G_CDS: 0.33 Total: 23.21 kcal Atomic # 6 Polarization: 8.96 SS G_CDS: 6.58 Total: 15.55 kcal Atomic # 7 Polarization: -121.14 SS G_CDS: -5.82 Total: -126.97 kcal Atomic # 8 Polarization: -38.68 SS G_CDS: 0.38 Total: -38.30 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 2.03 Total: 48.82 kcal Total: -81.19 3.50 -77.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132772912.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.209 kcal (2) G-P(sol) polarization free energy of solvation -81.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds