Wall clock time and date at job start Tue Mar 31 2020 14:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.44826 * 2 1 4 4 C 1.53039 * 109.46469 * 119.97359 * 2 1 3 5 5 C 1.53189 * 109.31217 * 181.38490 * 4 2 1 6 6 N 1.46931 * 108.89316 * 305.28908 * 5 4 2 7 7 C 1.34771 * 120.63040 * 233.67878 * 6 5 4 8 8 O 1.21498 * 120.00057 * 172.94990 * 7 6 5 9 9 C 1.48206 * 120.00112 * 352.94441 * 7 6 5 10 10 C 1.36318 * 126.38550 * 173.04088 * 9 7 6 11 11 C 1.42339 * 104.00918 * 180.02562 * 10 9 7 12 12 O 1.21976 * 127.14891 * 179.97438 * 11 10 9 13 13 N 1.34824 * 105.70451 * 0.02562 * 11 10 9 14 14 C 1.46502 * 124.57205 * 180.02562 * 13 11 10 15 15 O 1.20924 * 110.86484 * 359.69925 * 13 11 10 16 16 C 1.47206 * 118.55290 * 53.54216 * 6 5 4 17 17 C 1.53046 * 109.45648 * 240.03960 * 2 1 3 18 18 H 1.08995 * 109.49767 * 298.56478 * 17 2 1 19 19 C 1.53000 * 109.49484 * 58.66217 * 17 2 1 20 20 N 1.46503 * 109.46727 * 184.99911 * 19 17 2 21 21 C 1.36939 * 119.99736 * 179.97438 * 20 19 17 22 22 H 1.07997 * 120.00391 * 359.97438 * 21 20 19 23 23 C 1.38814 * 119.99818 * 180.02562 * 21 20 19 24 24 N 1.31623 * 120.00369 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00002 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.46698 * 60.00293 * 25 23 21 27 27 H 1.48499 * 109.47155 * 179.97438 * 25 23 21 28 28 H 1.48495 * 109.47404 * 299.99913 * 25 23 21 29 29 H 1.09009 * 109.46569 * 300.02975 * 1 2 3 30 30 H 1.08994 * 109.47561 * 60.02578 * 1 2 3 31 31 H 1.08998 * 109.47284 * 180.02562 * 1 2 3 32 32 H 1.08991 * 109.49581 * 61.42756 * 4 2 1 33 33 H 1.09000 * 109.49325 * 301.33145 * 4 2 1 34 34 H 1.08994 * 109.59048 * 65.14836 * 5 4 2 35 35 H 1.09004 * 109.58772 * 185.43178 * 5 4 2 36 36 H 1.07999 * 127.99226 * 359.96937 * 10 9 7 37 37 H 1.09006 * 109.47419 * 89.99734 * 14 13 11 38 38 H 1.08998 * 109.47429 * 209.99876 * 14 13 11 39 39 H 1.09000 * 109.46903 * 330.00044 * 14 13 11 40 40 H 1.08998 * 109.52845 * 186.67311 * 16 6 5 41 41 H 1.08999 * 109.67650 * 66.37009 * 16 6 5 42 42 H 1.08991 * 109.47354 * 304.99723 * 19 17 2 43 43 H 1.09001 * 109.47341 * 65.00575 * 19 17 2 44 44 H 0.96997 * 119.99975 * 0.02562 * 20 19 17 45 45 H 0.96989 * 120.00308 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0400 -0.7209 1.2499 5 6 3.5714 -0.6887 1.2640 6 7 4.0707 -1.2500 0.0012 7 6 4.9644 -2.2588 0.0040 8 8 5.2729 -2.7999 -1.0391 9 6 5.5709 -2.7080 1.2795 10 6 6.3797 -3.7915 1.4530 11 6 6.6818 -3.7768 2.8439 12 8 7.3809 -4.5684 3.4542 13 7 6.0339 -2.7068 3.3468 14 6 6.0638 -2.3030 4.7547 15 8 5.4298 -2.1215 2.4780 16 6 3.5713 -0.6885 -1.2645 17 6 2.0398 -0.7207 -1.2502 18 1 1.6977 -1.7555 -1.2385 19 6 1.5026 -0.0186 -2.4990 20 7 1.8915 -0.7768 -3.6907 21 6 1.5198 -0.3372 -4.9333 22 1 0.9397 0.5680 -5.0347 23 6 1.8878 -1.0559 -6.0625 24 7 2.5936 -2.1601 -5.9389 25 14 1.3803 -0.4568 -7.7574 26 1 1.9448 0.8964 -7.9936 27 1 1.8946 -1.3939 -8.7882 28 1 -0.1012 -0.3961 -7.8380 29 1 -0.3633 0.5144 0.8898 30 1 -0.3634 0.5134 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 1.6979 -1.7557 1.2381 33 1 1.6574 -0.2209 2.1397 34 1 3.9144 0.3408 1.3671 35 1 3.9418 -1.2826 2.0996 36 1 6.7132 -4.4982 0.7076 37 1 6.8949 -1.6169 4.9184 38 1 5.1275 -1.8070 5.0105 39 1 6.1914 -3.1846 5.3829 40 1 3.9416 -1.2844 -2.0987 41 1 3.9142 0.3408 -1.3701 42 1 0.4156 0.0394 -2.4440 43 1 1.9177 0.9876 -2.5571 44 1 2.4115 -1.5905 -3.5996 45 1 2.8510 -2.6620 -6.7278 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132772913.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:23 Heat of formation + Delta-G solvation = 31.023149 kcal Electronic energy + Delta-G solvation = -28170.671555 eV Core-core repulsion = 24193.789226 eV Total energy + Delta-G solvation = -3976.882329 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.36755 -40.40705 -38.39467 -38.23267 -35.23779 -34.52913 -33.83878 -32.48941 -31.97551 -29.98502 -28.96592 -27.92930 -25.78715 -24.36872 -23.81211 -23.26063 -22.44821 -21.32772 -20.40570 -19.59283 -18.69275 -18.30407 -17.44353 -17.01113 -16.39083 -15.61226 -15.43354 -15.14141 -14.91037 -14.58071 -14.29229 -14.08498 -14.00570 -13.97031 -13.75259 -13.58584 -13.38109 -13.28472 -13.03316 -12.76649 -12.61773 -11.97763 -11.83856 -11.59017 -11.05920 -10.92669 -10.86707 -10.71580 -10.63205 -10.40808 -10.29079 -10.24075 -10.19023 -9.94505 -9.62522 -8.90182 -8.81367 -8.73964 -6.90669 -5.73044 -3.03180 0.33338 1.28151 2.36481 2.49039 2.81070 3.07419 3.45485 3.49726 3.51440 4.07946 4.38488 4.53266 4.61244 4.67715 4.70246 4.73127 4.77692 4.79904 4.98528 5.01253 5.14256 5.22387 5.48482 5.56048 5.56742 5.59026 5.60972 5.68764 5.73093 5.81504 5.84616 5.93952 6.03594 6.13307 6.23993 6.34450 6.40625 6.45406 6.74262 6.81646 7.05271 7.33503 7.66145 7.70932 7.79234 8.44599 9.55640 10.12666 10.46601 11.49076 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.017777 B = 0.003081 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.697210 B = 9086.359788 C =10433.358712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.085 4.085 3 H 0.073 0.927 4 C -0.127 4.127 5 C 0.098 3.902 6 N -0.595 5.595 7 C 0.594 3.406 8 O -0.483 6.483 9 C 0.038 3.962 10 C -0.238 4.238 11 C 0.483 3.517 12 O -0.524 6.524 13 N -0.459 5.459 14 C 0.107 3.893 15 O -0.004 6.004 16 C 0.120 3.880 17 C -0.103 4.103 18 H 0.077 0.923 19 C 0.159 3.841 20 N -0.733 5.733 21 C -0.244 4.244 22 H 0.069 0.931 23 C -0.011 4.011 24 N -0.929 5.929 25 Si 0.906 3.094 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 H 0.049 0.951 30 H 0.066 0.934 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.092 0.908 36 H 0.194 0.806 37 H 0.080 0.920 38 H 0.092 0.908 39 H 0.104 0.896 40 H 0.109 0.891 41 H 0.075 0.925 42 H 0.029 0.971 43 H 0.019 0.981 44 H 0.385 0.615 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.134 4.590 24.063 24.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.104 4.104 3 H 0.091 0.909 4 C -0.166 4.166 5 C -0.025 4.025 6 N -0.328 5.328 7 C 0.376 3.624 8 O -0.356 6.356 9 C -0.020 4.020 10 C -0.262 4.262 11 C 0.281 3.719 12 O -0.405 6.405 13 N -0.225 5.225 14 C -0.030 4.030 15 O -0.014 6.014 16 C -0.001 4.001 17 C -0.122 4.122 18 H 0.095 0.905 19 C 0.031 3.969 20 N -0.378 5.378 21 C -0.375 4.375 22 H 0.087 0.913 23 C -0.208 4.208 24 N -0.577 5.577 25 Si 0.737 3.263 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.213 1.213 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.110 0.890 36 H 0.211 0.789 37 H 0.098 0.902 38 H 0.111 0.889 39 H 0.123 0.877 40 H 0.127 0.873 41 H 0.094 0.906 42 H 0.046 0.954 43 H 0.037 0.963 44 H 0.219 0.781 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.498 4.210 23.919 24.415 hybrid contribution -0.116 0.057 -0.921 0.930 sum 2.382 4.267 22.998 23.512 Atomic orbital electron populations 1.21880 0.94729 1.02081 1.01838 1.21116 0.96213 0.99420 0.93693 0.90851 1.21986 0.93874 1.01908 0.98798 1.22137 0.95232 0.99814 0.85320 1.48211 1.41527 1.33949 1.09102 1.16909 0.80152 0.80675 0.84620 1.90975 1.61265 1.54310 1.29052 1.23603 0.99103 0.94758 0.84513 1.23369 1.03708 1.01490 0.97679 1.18336 0.82936 0.82004 0.88615 1.90964 1.40189 1.41835 1.67524 1.46171 1.45258 1.26239 1.04813 1.22112 1.04350 1.03247 0.73252 1.84230 1.59042 1.45299 1.12823 1.21989 0.94230 0.99487 0.84382 1.21740 0.93929 1.01122 0.95436 0.90457 1.20720 0.96976 0.94032 0.85177 1.42410 1.65505 1.29102 1.00803 1.19136 1.28205 1.06408 0.83757 0.91292 1.24755 1.00756 0.97454 0.97818 1.69653 1.42249 1.17099 1.28720 0.86292 0.77989 0.77659 0.84348 1.21296 1.21695 1.21326 0.93156 0.91491 0.92699 0.91288 0.90486 0.90541 0.89010 0.78897 0.90197 0.88898 0.87742 0.87326 0.90627 0.95363 0.96287 0.78113 0.93378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 8.82 37.16 0.33 -1.22 16 2 C -0.09 -0.92 2.23 -90.58 -0.20 -1.12 16 3 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 4 C -0.13 -1.09 5.36 -26.61 -0.14 -1.24 16 5 C 0.10 0.86 6.13 -3.71 -0.02 0.83 16 6 N -0.60 -7.47 2.98 -173.53 -0.52 -7.99 16 7 C 0.59 8.43 7.70 -12.17 -0.09 8.34 16 8 O -0.48 -8.84 16.35 5.37 0.09 -8.75 16 9 C 0.04 0.45 6.88 -36.18 -0.25 0.20 16 10 C -0.24 -2.95 10.94 -38.70 -0.42 -3.37 16 11 C 0.48 6.16 8.02 -14.66 -0.12 6.04 16 12 O -0.52 -8.27 17.84 4.94 0.09 -8.18 16 13 N -0.46 -4.34 3.68 -69.77 -0.26 -4.59 16 14 C 0.11 0.52 11.22 59.85 0.67 1.19 16 15 O 0.00 -0.04 7.56 16.85 0.13 0.09 16 16 C 0.12 1.79 5.54 -3.56 -0.02 1.77 16 17 C -0.10 -1.51 1.92 -90.50 -0.17 -1.69 16 18 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 19 C 0.16 2.96 5.41 -4.04 -0.02 2.94 16 20 N -0.73 -18.10 5.38 -59.91 -0.32 -18.42 16 21 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 22 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 23 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 24 N -0.93 -28.36 13.06 55.49 0.72 -27.63 16 25 Si 0.91 22.41 29.55 -169.99 -5.02 17.39 16 26 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 27 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 28 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 29 H 0.05 0.43 8.14 -51.92 -0.42 0.00 16 30 H 0.07 0.78 6.29 -51.93 -0.33 0.46 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.09 0.72 4.25 -52.70 -0.22 0.49 16 36 H 0.19 2.27 8.06 -52.49 -0.42 1.85 16 37 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 39 H 0.10 0.49 8.03 -51.93 -0.42 0.08 16 40 H 0.11 2.06 6.23 -51.93 -0.32 1.74 16 41 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.03 0.53 6.14 -51.93 -0.32 0.21 16 43 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 44 H 0.38 10.18 6.90 -40.82 -0.28 9.90 16 45 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 364.99 15.07 5.50 5.50 Total: -1.00 -34.94 364.99 -6.82 -41.76 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -6.51 Total: 5.46 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: -0.71 Total: 5.37 kcal Atomic # 7 Polarization: -58.26 SS G_CDS: -0.37 Total: -58.64 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: 0.30 Total: -16.84 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.94 -6.82 -41.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132772913.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.783 kcal (2) G-P(sol) polarization free energy of solvation -34.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds