Wall clock time and date at job start Tue Mar 31 2020 14:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46076 * 2 1 4 4 C 1.53036 * 109.45198 * 119.96397 * 2 1 3 5 5 C 1.53198 * 109.31109 * 58.65029 * 4 2 1 6 6 N 1.46926 * 108.77612 * 54.63392 * 5 4 2 7 7 C 1.34775 * 120.62957 * 126.41153 * 6 5 4 8 8 O 1.21494 * 119.99676 * 174.58453 * 7 6 5 9 9 C 1.48205 * 120.00142 * 354.59184 * 7 6 5 10 10 C 1.36318 * 126.38509 * 173.68251 * 9 7 6 11 11 C 1.42343 * 104.00504 * 179.97438 * 10 9 7 12 12 O 1.21976 * 127.14373 * 179.97438 * 11 10 9 13 13 N 1.34826 * 105.70376 * 0.02562 * 11 10 9 14 14 C 1.46501 * 124.56283 * 180.02562 * 13 11 10 15 15 O 1.20919 * 110.86538 * 359.69927 * 13 11 10 16 16 C 1.46924 * 118.74129 * 306.39238 * 6 5 4 17 17 C 1.53040 * 109.46160 * 240.02818 * 2 1 3 18 18 H 1.08998 * 109.50429 * 181.40812 * 17 2 1 19 19 C 1.53007 * 109.49925 * 61.34047 * 17 2 1 20 20 N 1.46494 * 109.47286 * 175.06873 * 19 17 2 21 21 C 1.36935 * 119.99805 * 179.97438 * 20 19 17 22 22 H 1.08000 * 120.00331 * 359.97438 * 21 20 19 23 23 C 1.38819 * 120.00144 * 179.97438 * 21 20 19 24 24 N 1.31619 * 119.99654 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00413 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.46758 * 359.97438 * 25 23 21 27 27 H 1.48493 * 109.47227 * 119.99923 * 25 23 21 28 28 H 1.48499 * 109.46997 * 240.00158 * 25 23 21 29 29 H 1.08999 * 109.46813 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47177 * 299.97381 * 1 2 3 31 31 H 1.08997 * 109.47150 * 59.97478 * 1 2 3 32 32 H 1.09002 * 109.49811 * 178.59737 * 4 2 1 33 33 H 1.08991 * 109.50416 * 298.66723 * 4 2 1 34 34 H 1.09001 * 109.58757 * 174.42328 * 5 4 2 35 35 H 1.09001 * 109.58519 * 294.70780 * 5 4 2 36 36 H 1.07994 * 127.99606 * 359.97438 * 10 9 7 37 37 H 1.09008 * 109.47048 * 89.99847 * 14 13 11 38 38 H 1.08999 * 109.47113 * 209.99602 * 14 13 11 39 39 H 1.09000 * 109.47431 * 330.00106 * 14 13 11 40 40 H 1.09004 * 109.59047 * 293.82628 * 16 6 5 41 41 H 1.08997 * 109.59049 * 173.39508 * 16 6 5 42 42 H 1.09003 * 109.46964 * 295.06657 * 19 17 2 43 43 H 1.08998 * 109.46944 * 55.06688 * 19 17 2 44 44 H 0.96999 * 120.00422 * 359.97438 * 20 19 17 45 45 H 0.97000 * 120.00362 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0396 -0.7207 1.2501 5 6 1.4991 -2.1541 1.2643 6 7 1.8620 -2.8089 0.0001 7 6 2.5150 -3.9879 0.0002 8 8 2.7226 -4.5674 -1.0472 9 6 2.9795 -4.5777 1.2781 10 6 3.5406 -5.8089 1.4438 11 6 3.8018 -5.8832 2.8411 12 8 4.3045 -6.8143 3.4478 13 7 3.3770 -4.7112 3.3546 14 6 3.4525 -4.3488 4.7720 15 8 2.9313 -3.9970 2.4866 16 6 1.4993 -2.1543 -1.2642 17 6 2.0399 -0.7209 -1.2500 18 1 3.1295 -0.7432 -1.2382 19 6 1.5578 0.0198 -2.4991 20 7 2.1420 -0.6006 -3.6906 21 6 1.8511 -0.1044 -4.9333 22 1 1.1907 0.7440 -5.0350 23 6 2.4052 -0.6919 -6.0625 24 7 3.2104 -1.7256 -5.9385 25 14 2.0089 -0.0146 -7.7576 26 1 1.0867 1.1418 -7.6254 27 1 3.2629 0.4248 -8.4206 28 1 1.3616 -1.0725 -8.5744 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5134 0.8902 31 1 -0.3633 0.5142 -0.8897 32 1 3.1293 -0.7430 1.2384 33 1 1.6961 -0.1931 2.1398 34 1 1.9375 -2.7018 2.0986 35 1 0.4143 -2.1345 1.3698 36 1 3.7406 -6.5553 0.6894 37 1 4.4034 -3.8540 4.9704 38 1 2.6332 -3.6735 5.0185 39 1 3.3773 -5.2492 5.3818 40 1 0.4143 -2.1345 -1.3674 41 1 1.9379 -2.7019 -2.0983 42 1 0.4707 -0.0349 -2.5570 43 1 1.8667 1.0636 -2.4443 44 1 2.7349 -1.3629 -3.5994 45 1 3.5979 -2.1360 -6.7274 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132772914.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:26 Heat of formation + Delta-G solvation = 36.517523 kcal Electronic energy + Delta-G solvation = -28375.938627 eV Core-core repulsion = 24399.294552 eV Total energy + Delta-G solvation = -3976.644075 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.35590 -40.55198 -38.40657 -38.35845 -35.19908 -34.52429 -33.68729 -32.48693 -31.98394 -30.03417 -28.62047 -27.69751 -25.87932 -25.10993 -23.86291 -23.23442 -22.91049 -21.29621 -20.40731 -18.86266 -18.66595 -18.05051 -17.45300 -16.98975 -16.37618 -15.61738 -15.39646 -15.37248 -15.03049 -14.92468 -14.40164 -14.13049 -14.02330 -13.86317 -13.75714 -13.64886 -13.36308 -13.25851 -13.08150 -12.79207 -12.52355 -11.96026 -11.76360 -11.35222 -11.17046 -10.95640 -10.86443 -10.76982 -10.64610 -10.38092 -10.32447 -10.23213 -10.17234 -9.93142 -9.64477 -8.88926 -8.80816 -8.71751 -6.91890 -5.74352 -3.04355 0.34018 1.27624 2.37732 2.50149 2.83128 3.07143 3.44480 3.49518 3.52345 4.06861 4.39198 4.53457 4.60829 4.68934 4.70562 4.73442 4.78514 4.81788 4.99529 5.03205 5.12026 5.18510 5.40147 5.51104 5.55533 5.59073 5.60189 5.68616 5.75383 5.79353 5.84139 5.93065 6.01087 6.21602 6.24115 6.25287 6.38589 6.47916 6.69514 6.80955 7.05160 7.35116 7.67612 7.71187 7.80789 8.43258 9.54537 10.11362 10.45191 11.47945 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.018271 B = 0.003134 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.129522 B = 8933.483205 C =10186.392643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.086 4.086 3 H 0.077 0.923 4 C -0.127 4.127 5 C 0.095 3.905 6 N -0.594 5.594 7 C 0.593 3.407 8 O -0.484 6.484 9 C 0.037 3.963 10 C -0.237 4.237 11 C 0.483 3.517 12 O -0.525 6.525 13 N -0.460 5.460 14 C 0.107 3.893 15 O -0.004 6.004 16 C 0.119 3.881 17 C -0.103 4.103 18 H 0.076 0.924 19 C 0.161 3.839 20 N -0.734 5.734 21 C -0.242 4.242 22 H 0.070 0.930 23 C -0.012 4.012 24 N -0.929 5.929 25 Si 0.906 3.094 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.291 1.291 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.095 0.905 35 H 0.080 0.920 36 H 0.194 0.806 37 H 0.080 0.920 38 H 0.092 0.908 39 H 0.104 0.896 40 H 0.077 0.923 41 H 0.107 0.893 42 H 0.024 0.976 43 H 0.022 0.978 44 H 0.384 0.616 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.227 -0.019 24.141 24.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.105 4.105 3 H 0.095 0.905 4 C -0.165 4.165 5 C -0.028 4.028 6 N -0.326 5.326 7 C 0.376 3.624 8 O -0.357 6.357 9 C -0.020 4.020 10 C -0.262 4.262 11 C 0.281 3.719 12 O -0.406 6.406 13 N -0.226 5.226 14 C -0.030 4.030 15 O -0.013 6.013 16 C -0.001 4.001 17 C -0.123 4.123 18 H 0.094 0.906 19 C 0.033 3.967 20 N -0.379 5.379 21 C -0.374 4.374 22 H 0.088 0.912 23 C -0.208 4.208 24 N -0.577 5.577 25 Si 0.737 3.263 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.112 0.888 35 H 0.098 0.902 36 H 0.211 0.789 37 H 0.098 0.902 38 H 0.111 0.889 39 H 0.122 0.878 40 H 0.096 0.904 41 H 0.126 0.874 42 H 0.042 0.958 43 H 0.040 0.960 44 H 0.218 0.782 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.997 -0.469 24.002 24.337 hybrid contribution 0.079 0.173 -0.930 0.950 sum -3.917 -0.295 23.072 23.404 Atomic orbital electron populations 1.22000 0.95089 1.01999 1.02024 1.21099 0.96125 0.99594 0.93688 0.90495 1.21938 1.01335 0.94485 0.98772 1.22259 1.00981 0.94265 0.85289 1.48134 1.55538 1.19865 1.09059 1.16937 0.79247 0.81566 0.84660 1.90966 1.55963 1.60046 1.28750 1.23621 0.99951 0.94182 0.84262 1.23362 1.06547 0.98685 0.97625 1.18333 0.82287 0.82626 0.88626 1.90962 1.46947 1.34583 1.68075 1.46215 1.57683 1.14411 1.04277 1.22111 1.04137 1.03872 0.72877 1.84227 1.70068 1.34755 1.12258 1.21960 1.00687 0.93143 0.84319 1.21726 1.01090 0.93973 0.95489 0.90557 1.20677 0.96074 0.94784 0.85163 1.42423 1.56960 1.37631 1.00840 1.19226 1.23376 1.11054 0.83708 0.91170 1.24759 0.99964 0.98277 0.97848 1.69673 1.35341 1.24187 1.28495 0.86143 0.77396 0.77972 0.84806 1.20604 1.21899 1.21854 0.92478 0.93018 0.91594 0.91302 0.90527 0.88774 0.90211 0.78926 0.90180 0.88930 0.87767 0.90448 0.87435 0.95803 0.95991 0.78155 0.93481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 8.11 37.16 0.30 -1.19 16 2 C -0.09 -0.91 2.71 -90.58 -0.25 -1.16 16 3 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 4 C -0.13 -1.07 5.63 -26.61 -0.15 -1.22 16 5 C 0.09 0.83 5.87 -3.71 -0.02 0.81 16 6 N -0.59 -7.44 2.97 -173.74 -0.52 -7.95 16 7 C 0.59 8.43 7.71 -12.17 -0.09 8.33 16 8 O -0.48 -8.82 16.34 5.37 0.09 -8.73 16 9 C 0.04 0.44 6.94 -36.18 -0.25 0.19 16 10 C -0.24 -2.95 10.94 -38.70 -0.42 -3.38 16 11 C 0.48 6.20 8.02 -14.66 -0.12 6.08 16 12 O -0.52 -8.31 17.84 4.94 0.09 -8.22 16 13 N -0.46 -4.39 3.68 -69.77 -0.26 -4.65 16 14 C 0.11 0.53 11.22 59.85 0.67 1.20 16 15 O 0.00 -0.04 7.44 16.86 0.13 0.08 16 16 C 0.12 1.79 5.04 -3.71 -0.02 1.77 16 17 C -0.10 -1.51 2.15 -90.49 -0.19 -1.70 16 18 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 19 C 0.16 2.99 5.19 -4.04 -0.02 2.97 16 20 N -0.73 -18.07 5.38 -59.91 -0.32 -18.39 16 21 C -0.24 -6.69 9.99 -15.06 -0.15 -6.85 16 22 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 23 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 24 N -0.93 -28.31 13.06 55.49 0.72 -27.58 16 25 Si 0.91 22.40 29.55 -169.99 -5.02 17.38 16 26 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 27 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 28 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 29 H 0.06 0.55 4.98 -51.93 -0.26 0.29 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.72 6.58 -51.93 -0.34 0.38 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.10 0.74 3.83 -54.62 -0.21 0.53 16 35 H 0.08 0.61 6.70 -51.93 -0.35 0.26 16 36 H 0.19 2.26 8.06 -52.49 -0.42 1.84 16 37 H 0.08 0.31 8.14 -51.92 -0.42 -0.11 16 38 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16 39 H 0.10 0.50 8.03 -51.93 -0.42 0.08 16 40 H 0.08 1.10 6.69 -51.93 -0.35 0.75 16 41 H 0.11 2.04 6.25 -51.93 -0.32 1.72 16 42 H 0.02 0.44 6.73 -51.93 -0.35 0.09 16 43 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.38 10.13 6.90 -40.82 -0.28 9.85 16 45 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 358.60 15.07 5.40 5.40 Total: -1.00 -34.94 358.60 -6.73 -41.67 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -6.23 Total: 5.56 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: -0.81 Total: 5.43 kcal Atomic # 7 Polarization: -58.20 SS G_CDS: -0.37 Total: -58.57 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: 0.30 Total: -16.88 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.94 -6.73 -41.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132772914.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.183 kcal (2) G-P(sol) polarization free energy of solvation -34.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds