Wall clock time and date at job start Tue Mar 31 2020 14:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46076 * 2 1 4 4 C 1.53036 * 109.45198 * 119.96397 * 2 1 3 5 5 C 1.53198 * 109.31109 * 58.65029 * 4 2 1 6 6 N 1.46926 * 108.77612 * 54.63392 * 5 4 2 7 7 C 1.34775 * 120.62957 * 126.41153 * 6 5 4 8 8 O 1.21494 * 119.99676 * 174.58453 * 7 6 5 9 9 C 1.48205 * 120.00142 * 354.59184 * 7 6 5 10 10 C 1.36318 * 126.38509 * 173.68251 * 9 7 6 11 11 C 1.42343 * 104.00504 * 179.97438 * 10 9 7 12 12 O 1.21976 * 127.14373 * 179.97438 * 11 10 9 13 13 N 1.34826 * 105.70376 * 0.02562 * 11 10 9 14 14 C 1.46501 * 124.56283 * 180.02562 * 13 11 10 15 15 O 1.20919 * 110.86538 * 359.69927 * 13 11 10 16 16 C 1.46924 * 118.74129 * 306.39238 * 6 5 4 17 17 C 1.53040 * 109.46160 * 240.02818 * 2 1 3 18 18 H 1.08998 * 109.50429 * 181.40812 * 17 2 1 19 19 C 1.53007 * 109.49925 * 61.34047 * 17 2 1 20 20 N 1.46494 * 109.47286 * 175.06873 * 19 17 2 21 21 C 1.36935 * 119.99805 * 179.97438 * 20 19 17 22 22 H 1.08000 * 120.00331 * 359.97438 * 21 20 19 23 23 C 1.38819 * 120.00144 * 179.97438 * 21 20 19 24 24 N 1.31619 * 119.99654 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00413 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.46758 * 359.97438 * 25 23 21 27 27 H 1.48493 * 109.47227 * 119.99923 * 25 23 21 28 28 H 1.48499 * 109.46997 * 240.00158 * 25 23 21 29 29 H 1.08999 * 109.46813 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47177 * 299.97381 * 1 2 3 31 31 H 1.08997 * 109.47150 * 59.97478 * 1 2 3 32 32 H 1.09002 * 109.49811 * 178.59737 * 4 2 1 33 33 H 1.08991 * 109.50416 * 298.66723 * 4 2 1 34 34 H 1.09001 * 109.58757 * 174.42328 * 5 4 2 35 35 H 1.09001 * 109.58519 * 294.70780 * 5 4 2 36 36 H 1.07994 * 127.99606 * 359.97438 * 10 9 7 37 37 H 1.09008 * 109.47048 * 89.99847 * 14 13 11 38 38 H 1.08999 * 109.47113 * 209.99602 * 14 13 11 39 39 H 1.09000 * 109.47431 * 330.00106 * 14 13 11 40 40 H 1.09004 * 109.59047 * 293.82628 * 16 6 5 41 41 H 1.08997 * 109.59049 * 173.39508 * 16 6 5 42 42 H 1.09003 * 109.46964 * 295.06657 * 19 17 2 43 43 H 1.08998 * 109.46944 * 55.06688 * 19 17 2 44 44 H 0.96999 * 120.00422 * 359.97438 * 20 19 17 45 45 H 0.97000 * 120.00362 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0396 -0.7207 1.2501 5 6 1.4991 -2.1541 1.2643 6 7 1.8620 -2.8089 0.0001 7 6 2.5150 -3.9879 0.0002 8 8 2.7226 -4.5674 -1.0472 9 6 2.9795 -4.5777 1.2781 10 6 3.5406 -5.8089 1.4438 11 6 3.8018 -5.8832 2.8411 12 8 4.3045 -6.8143 3.4478 13 7 3.3770 -4.7112 3.3546 14 6 3.4525 -4.3488 4.7720 15 8 2.9313 -3.9970 2.4866 16 6 1.4993 -2.1543 -1.2642 17 6 2.0399 -0.7209 -1.2500 18 1 3.1295 -0.7432 -1.2382 19 6 1.5578 0.0198 -2.4991 20 7 2.1420 -0.6006 -3.6906 21 6 1.8511 -0.1044 -4.9333 22 1 1.1907 0.7440 -5.0350 23 6 2.4052 -0.6919 -6.0625 24 7 3.2104 -1.7256 -5.9385 25 14 2.0089 -0.0146 -7.7576 26 1 1.0867 1.1418 -7.6254 27 1 3.2629 0.4248 -8.4206 28 1 1.3616 -1.0725 -8.5744 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5134 0.8902 31 1 -0.3633 0.5142 -0.8897 32 1 3.1293 -0.7430 1.2384 33 1 1.6961 -0.1931 2.1398 34 1 1.9375 -2.7018 2.0986 35 1 0.4143 -2.1345 1.3698 36 1 3.7406 -6.5553 0.6894 37 1 4.4034 -3.8540 4.9704 38 1 2.6332 -3.6735 5.0185 39 1 3.3773 -5.2492 5.3818 40 1 0.4143 -2.1345 -1.3674 41 1 1.9379 -2.7019 -2.0983 42 1 0.4707 -0.0349 -2.5570 43 1 1.8667 1.0636 -2.4443 44 1 2.7349 -1.3629 -3.5994 45 1 3.5979 -2.1360 -6.7274 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132772914.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:25 Heat of formation + Delta-G solvation = 11.735288 kcal Electronic energy + Delta-G solvation = -28377.013265 eV Core-core repulsion = 24399.294552 eV Total energy + Delta-G solvation = -3977.718713 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -46.27206 -41.64040 -39.53123 -39.38895 -36.71991 -35.52650 -34.88291 -33.52280 -33.45579 -31.60117 -29.42125 -28.67467 -27.24060 -26.15647 -24.99452 -24.71472 -23.86448 -22.59434 -21.48093 -19.95590 -19.55355 -19.05767 -18.84047 -18.35861 -17.52904 -16.78171 -16.52803 -16.45787 -16.37983 -15.93081 -15.70524 -15.39823 -15.18039 -15.04242 -14.93354 -14.56620 -14.48160 -14.24111 -14.10547 -13.78852 -13.64054 -13.04173 -12.88907 -12.86144 -12.64843 -12.45428 -12.12134 -11.98792 -11.89399 -11.80671 -11.76627 -11.43503 -11.24782 -11.14048 -11.11426 -10.92035 -9.80572 -9.68947 -8.97740 -7.93031 -5.22531 -0.66694 0.43646 1.34181 1.47281 1.47509 1.48622 1.58397 1.77085 2.09424 2.56874 3.11844 3.40681 3.53301 3.69773 3.77574 3.82612 3.84927 4.02396 4.17537 4.23586 4.30429 4.37573 4.39149 4.46201 4.56844 4.62577 4.65931 4.69066 4.75022 4.79810 4.90534 4.94791 5.04798 5.12428 5.19115 5.26606 5.30894 5.35472 5.44273 5.51785 5.63847 5.99802 6.28260 6.39580 6.63031 6.86321 7.34189 8.11335 8.32058 9.30486 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.018271 B = 0.003134 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.129522 B = 8933.483205 C =10186.392643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.080 4.080 3 H 0.084 0.916 4 C -0.120 4.120 5 C 0.090 3.910 6 N -0.586 5.586 7 C 0.591 3.409 8 O -0.537 6.537 9 C 0.044 3.956 10 C -0.249 4.249 11 C 0.474 3.526 12 O -0.564 6.564 13 N -0.446 5.446 14 C 0.093 3.907 15 O 0.022 5.978 16 C 0.128 3.872 17 C -0.092 4.092 18 H 0.055 0.945 19 C 0.159 3.841 20 N -0.749 5.749 21 C -0.241 4.241 22 H 0.079 0.921 23 C -0.079 4.079 24 N -0.971 5.971 25 Si 0.973 3.027 26 H -0.262 1.262 27 H -0.295 1.295 28 H -0.296 1.296 29 H 0.057 0.943 30 H 0.081 0.919 31 H 0.049 0.951 32 H 0.062 0.938 33 H 0.117 0.883 34 H 0.109 0.891 35 H 0.104 0.896 36 H 0.190 0.810 37 H 0.097 0.903 38 H 0.130 0.870 39 H 0.106 0.894 40 H 0.087 0.913 41 H 0.059 0.941 42 H 0.034 0.966 43 H 0.025 0.975 44 H 0.371 0.629 45 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.907 2.366 27.084 27.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.099 4.099 3 H 0.102 0.898 4 C -0.158 4.158 5 C -0.031 4.031 6 N -0.317 5.317 7 C 0.376 3.624 8 O -0.414 6.414 9 C -0.015 4.015 10 C -0.274 4.274 11 C 0.272 3.728 12 O -0.448 6.448 13 N -0.208 5.208 14 C -0.041 4.041 15 O 0.012 5.988 16 C 0.006 3.994 17 C -0.112 4.112 18 H 0.074 0.926 19 C 0.033 3.967 20 N -0.391 5.391 21 C -0.373 4.373 22 H 0.097 0.903 23 C -0.271 4.271 24 N -0.622 5.622 25 Si 0.802 3.198 26 H -0.186 1.186 27 H -0.223 1.223 28 H -0.223 1.223 29 H 0.076 0.924 30 H 0.100 0.900 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.135 0.865 34 H 0.126 0.874 35 H 0.122 0.878 36 H 0.207 0.793 37 H 0.115 0.885 38 H 0.148 0.852 39 H 0.125 0.875 40 H 0.105 0.895 41 H 0.078 0.922 42 H 0.052 0.948 43 H 0.043 0.957 44 H 0.203 0.797 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -5.728 2.013 27.047 27.720 hybrid contribution 0.543 -0.453 -1.729 1.868 sum -5.185 1.561 25.318 25.891 Atomic orbital electron populations 1.21984 0.93865 1.02253 1.02757 1.21089 0.97030 0.99543 0.92253 0.89807 1.21945 1.00987 0.93915 0.98965 1.22627 1.02662 0.94399 0.83398 1.48184 1.54472 1.19246 1.09755 1.17142 0.78886 0.81667 0.84738 1.90944 1.58022 1.61606 1.30837 1.22985 1.00294 0.93830 0.84345 1.23442 1.06839 0.99075 0.98024 1.18304 0.82666 0.83261 0.88543 1.90937 1.49118 1.36088 1.68696 1.46540 1.55519 1.13312 1.05467 1.22643 1.06671 1.05056 0.69764 1.84243 1.69104 1.33939 1.11493 1.21649 1.00704 0.92864 0.84203 1.21590 0.99770 0.93780 0.96018 0.92641 1.20875 0.96180 0.94871 0.84777 1.42692 1.56987 1.37461 1.02008 1.19678 1.22134 1.10498 0.84976 0.90270 1.25604 1.00686 0.99054 1.01748 1.69852 1.37261 1.26060 1.28995 0.85080 0.77104 0.77598 0.80027 1.18627 1.22260 1.22307 0.92433 0.89995 0.93219 0.91951 0.86485 0.87375 0.87806 0.79260 0.88476 0.85216 0.87523 0.89486 0.92243 0.94849 0.95696 0.79731 0.94189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 8.11 71.98 0.58 -1.76 16 2 C -0.08 -1.45 2.71 -10.77 -0.03 -1.48 16 3 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 4 C -0.12 -1.50 5.63 30.67 0.17 -1.33 16 5 C 0.09 1.24 5.87 86.36 0.51 1.75 16 6 N -0.59 -14.17 2.97 -821.90 -2.44 -16.62 16 7 C 0.59 17.10 7.71 86.89 0.67 17.77 16 8 O -0.54 -20.93 16.34 -3.70 -0.06 -20.99 16 9 C 0.04 1.02 6.94 24.47 0.17 1.19 16 10 C -0.25 -6.29 10.94 22.84 0.25 -6.04 16 11 C 0.47 11.91 8.02 85.25 0.68 12.59 16 12 O -0.56 -17.98 17.84 -5.24 -0.09 -18.07 16 13 N -0.45 -7.40 3.68 -492.73 -1.82 -9.22 16 14 C 0.09 0.59 11.22 127.77 1.43 2.02 16 15 O 0.02 0.35 7.44 70.49 0.52 0.88 16 16 C 0.13 3.88 5.04 86.37 0.44 4.31 16 17 C -0.09 -2.65 2.15 -10.71 -0.02 -2.67 16 18 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 19 C 0.16 5.91 5.19 86.38 0.45 6.35 16 20 N -0.75 -37.88 5.38 -343.45 -1.85 -39.73 16 21 C -0.24 -13.45 9.99 84.04 0.84 -12.61 16 22 H 0.08 4.19 7.83 -2.91 -0.02 4.16 16 23 C -0.08 -4.61 5.50 84.86 0.47 -4.14 16 24 N -0.97 -61.40 13.06 21.65 0.28 -61.11 16 25 Si 0.97 46.76 29.55 68.60 2.03 48.79 16 26 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 27 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 28 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 29 H 0.06 0.89 4.98 -2.39 -0.01 0.88 16 30 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.05 0.94 6.58 -2.39 -0.02 0.93 16 32 H 0.06 0.91 8.14 -2.39 -0.02 0.90 16 33 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.11 1.21 3.83 -44.97 -0.17 1.04 16 35 H 0.10 1.06 6.70 -2.39 -0.02 1.04 16 36 H 0.19 4.79 8.06 -2.91 -0.02 4.76 16 37 H 0.10 0.39 8.14 -2.38 -0.02 0.37 16 38 H 0.13 -0.09 8.14 -2.39 -0.02 -0.11 16 39 H 0.11 0.73 8.03 -2.39 -0.02 0.71 16 40 H 0.09 2.45 6.69 -2.38 -0.02 2.43 16 41 H 0.06 2.42 6.25 -2.39 -0.01 2.41 16 42 H 0.03 1.20 6.73 -2.39 -0.02 1.18 16 43 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.37 20.61 6.90 -92.71 -0.64 19.97 16 45 H 0.25 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -80.74 358.60 3.41 -77.33 By element: Atomic # 1 Polarization: 22.57 SS G_CDS: 0.23 Total: 22.80 kcal Atomic # 6 Polarization: 9.34 SS G_CDS: 6.61 Total: 15.94 kcal Atomic # 7 Polarization: -120.86 SS G_CDS: -5.82 Total: -126.68 kcal Atomic # 8 Polarization: -38.56 SS G_CDS: 0.37 Total: -38.19 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.79 kcal Total: -80.74 3.41 -77.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132772914.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.063 kcal (2) G-P(sol) polarization free energy of solvation -80.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds