Wall clock time and date at job start Tue Mar 31 2020 14:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47033 * 2 1 4 4 C 1.52997 * 109.47264 * 239.99923 * 2 1 3 5 5 C 1.53006 * 109.46841 * 174.99605 * 4 2 1 6 6 H 1.09000 * 109.47128 * 55.00806 * 5 4 2 7 7 C 1.53005 * 109.46558 * 175.00091 * 5 4 2 8 8 N 1.46498 * 109.47329 * 295.00084 * 5 4 2 9 9 C 1.34775 * 119.99607 * 155.00046 * 8 5 4 10 10 O 1.21283 * 120.00603 * 359.97438 * 9 8 5 11 11 C 1.50704 * 119.99854 * 180.02562 * 9 8 5 12 12 N 1.46497 * 109.46946 * 179.97438 * 11 9 8 13 13 C 1.34778 * 119.99990 * 179.97438 * 12 11 9 14 14 O 1.21623 * 119.99659 * 0.02562 * 13 12 11 15 15 C 1.47378 * 120.00538 * 180.02562 * 13 12 11 16 16 C 1.47012 * 127.19564 * 179.97438 * 15 13 12 17 17 C 1.34180 * 105.95463 * 180.02562 * 16 15 13 18 18 O 1.34209 * 109.12326 * 359.97438 * 17 16 15 19 19 C 1.33654 * 110.91171 * 359.72744 * 18 17 16 20 20 N 1.46498 * 109.46890 * 119.99923 * 2 1 3 21 21 C 1.36935 * 120.00239 * 275.00034 * 20 2 1 22 22 H 1.08004 * 120.00069 * 0.02562 * 21 20 2 23 23 C 1.38811 * 120.00368 * 180.02562 * 21 20 2 24 24 N 1.31624 * 119.99540 * 359.72375 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46758 * 269.72270 * 25 23 21 27 27 H 1.48499 * 109.47026 * 29.72118 * 25 23 21 28 28 H 1.48496 * 109.47474 * 149.72153 * 25 23 21 29 29 H 1.08994 * 109.47214 * 299.99506 * 1 2 3 30 30 H 1.08994 * 109.47102 * 60.00064 * 1 2 3 31 31 H 1.09005 * 109.47033 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47554 * 295.00148 * 4 2 1 33 33 H 1.09001 * 109.46960 * 55.00369 * 4 2 1 34 34 H 1.08999 * 109.47043 * 60.01027 * 7 5 4 35 35 H 1.09001 * 109.46484 * 180.02562 * 7 5 4 36 36 H 1.08994 * 109.47185 * 300.00100 * 7 5 4 37 37 H 0.97002 * 120.00037 * 335.00467 * 8 5 4 38 38 H 1.08993 * 109.46986 * 300.00093 * 11 9 8 39 39 H 1.09003 * 109.46775 * 59.99881 * 11 9 8 40 40 H 0.97003 * 120.00324 * 0.02562 * 12 11 9 41 41 H 1.08003 * 127.02663 * 359.97438 * 16 15 13 42 42 H 1.08002 * 125.43538 * 180.02562 * 17 16 15 43 43 H 1.07995 * 125.80348 * 180.27993 * 19 18 17 44 44 H 0.97004 * 119.99747 * 95.00774 * 20 2 1 45 45 H 0.97000 * 120.00481 * 0.27542 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 1 3.9955 -0.9922 -0.3868 7 6 4.0852 -1.4382 -2.4924 8 7 3.9479 0.7895 -1.4924 9 6 5.1611 1.2137 -1.0866 10 8 5.9356 0.4343 -0.5730 11 6 5.5550 2.6567 -1.2699 12 7 6.9096 2.8628 -0.7516 13 6 7.4750 4.0849 -0.8102 14 8 6.8603 5.0167 -1.2931 15 6 8.8379 4.2922 -0.2893 16 6 9.6019 5.5481 -0.2735 17 6 10.7828 5.2545 0.2919 18 8 10.8033 3.9523 0.6162 19 6 9.6519 3.3600 0.2847 20 7 2.0183 -0.6906 1.1962 21 6 2.1490 -0.0075 2.3758 22 1 1.8918 1.0403 2.4244 23 6 2.6122 -0.6617 3.5091 24 7 2.9205 -1.9400 3.4511 25 14 2.7899 0.2699 5.1184 26 1 4.1540 0.8503 5.2062 27 1 1.7835 1.3605 5.1727 28 1 2.5735 -0.6603 6.2554 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.7517 -1.7715 -1.2056 33 1 1.6054 -0.2617 -2.1369 34 1 3.6547 -1.0591 -3.4193 35 1 5.1716 -1.3615 -2.5380 36 1 3.8002 -2.4818 -2.3594 37 1 3.3284 1.4130 -1.9027 38 1 5.5290 2.9085 -2.3301 39 1 4.8577 3.2954 -0.7276 40 1 7.4000 2.1195 -0.3668 41 1 9.2790 6.5105 -0.6424 42 1 11.5879 5.9544 0.4599 43 1 9.4087 2.3195 0.4415 44 1 2.2490 -1.6318 1.1526 45 1 2.8279 -2.4240 2.6156 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134421232.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:15 Heat of formation + Delta-G solvation = -52.437060 kcal Electronic energy + Delta-G solvation = -27218.988326 eV Core-core repulsion = 23238.486891 eV Total energy + Delta-G solvation = -3980.501435 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.77482 -40.15221 -39.09434 -37.06752 -34.85063 -34.41023 -33.09840 -32.42677 -31.09471 -30.20007 -28.34771 -27.64416 -26.42361 -23.72148 -23.41350 -21.75107 -21.47705 -20.50493 -20.31443 -19.94504 -18.90077 -17.43678 -16.96530 -16.49859 -16.41607 -15.97840 -15.82529 -15.45105 -14.98970 -14.82657 -14.45287 -14.17085 -13.72304 -13.58691 -13.31224 -13.23173 -13.17763 -13.05934 -12.63012 -12.57606 -12.19193 -12.12846 -11.74623 -11.74267 -11.08858 -10.74945 -10.53867 -10.47732 -10.26290 -10.13878 -10.07266 -9.98691 -9.82462 -9.34541 -9.14756 -9.05742 -8.90727 -8.87599 -7.00399 -6.06381 -3.06037 1.11342 1.82599 2.62241 2.67919 2.78970 3.20043 3.44192 3.53108 3.57908 3.71147 4.35200 4.42783 4.64290 4.69442 4.84557 5.00221 5.14823 5.23253 5.28544 5.33952 5.35130 5.40356 5.54550 5.62972 5.66100 5.76264 5.81303 5.88541 6.00478 6.01097 6.10944 6.17595 6.22909 6.32368 6.43382 6.53383 6.65576 6.67998 6.80452 6.97701 7.33653 7.56172 7.83462 8.04093 8.27298 8.78999 9.25784 10.11925 10.26453 11.42078 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.010389 B = 0.003336 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2694.503356 B = 8390.560737 C = 9990.694227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.177 3.823 3 H 0.047 0.953 4 C -0.133 4.133 5 C 0.145 3.855 6 H 0.103 0.897 7 C -0.161 4.161 8 N -0.710 5.710 9 C 0.511 3.489 10 O -0.533 6.533 11 C 0.102 3.898 12 N -0.712 5.712 13 C 0.591 3.409 14 O -0.540 6.540 15 C -0.237 4.237 16 C -0.164 4.164 17 C -0.043 4.043 18 O -0.173 6.173 19 C 0.028 3.972 20 N -0.732 5.732 21 C -0.326 4.326 22 H 0.061 0.939 23 C -0.043 4.043 24 N -0.944 5.944 25 Si 1.078 2.922 26 H -0.296 1.296 27 H -0.296 1.296 28 H -0.288 1.288 29 H 0.053 0.947 30 H 0.036 0.964 31 H 0.044 0.956 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.052 0.948 35 H 0.056 0.944 36 H 0.064 0.936 37 H 0.398 0.602 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.411 0.589 41 H 0.160 0.840 42 H 0.209 0.791 43 H 0.214 0.786 44 H 0.365 0.635 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.985 10.000 -13.407 19.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.067 3.933 3 H 0.065 0.935 4 C -0.172 4.172 5 C 0.041 3.959 6 H 0.121 0.879 7 C -0.220 4.220 8 N -0.361 5.361 9 C 0.296 3.704 10 O -0.410 6.410 11 C -0.026 4.026 12 N -0.367 5.367 13 C 0.378 3.622 14 O -0.418 6.418 15 C -0.241 4.241 16 C -0.184 4.184 17 C -0.109 4.109 18 O -0.068 6.068 19 C -0.042 4.042 20 N -0.375 5.375 21 C -0.457 4.457 22 H 0.079 0.921 23 C -0.241 4.241 24 N -0.590 5.590 25 Si 0.910 3.090 26 H -0.224 1.224 27 H -0.223 1.223 28 H -0.214 1.214 29 H 0.072 0.928 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.232 0.768 38 H 0.116 0.884 39 H 0.119 0.881 40 H 0.249 0.751 41 H 0.177 0.823 42 H 0.226 0.774 43 H 0.231 0.769 44 H 0.199 0.801 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 10.720 10.041 -11.608 18.721 hybrid contribution -0.846 -0.038 -1.701 1.900 sum 9.875 10.003 -13.309 19.357 Atomic orbital electron populations 1.22441 0.99413 1.00743 0.99950 1.20162 0.91613 0.95518 0.86042 0.93479 1.22201 0.93653 1.02234 0.99075 1.21043 0.95171 0.79882 0.99809 0.87906 1.22186 1.01537 1.00199 0.98030 1.45846 1.16091 1.11928 1.62190 1.20316 0.82525 0.89528 0.78061 1.90710 1.51114 1.56163 1.43007 1.21070 0.85318 0.94594 1.01574 1.45509 1.16432 1.11569 1.63206 1.17204 0.84546 0.82166 0.78240 1.90786 1.63850 1.41382 1.45803 1.21444 0.96673 0.95334 1.10657 1.22769 0.93394 0.98517 1.03698 1.23961 1.00513 0.82784 1.03609 1.83811 1.35778 1.22555 1.64670 1.24613 0.83436 0.98857 0.97309 1.42407 1.79148 1.09654 1.06263 1.19983 1.41696 0.94907 0.89141 0.92064 1.25661 0.99495 0.97476 1.01466 1.70846 1.51522 1.08203 1.28385 0.83253 0.75795 0.74194 0.75777 1.22426 1.22264 1.21422 0.92815 0.94544 0.93666 0.90671 0.91762 0.92937 0.92464 0.91677 0.76804 0.88423 0.88076 0.75140 0.82258 0.77448 0.76926 0.80147 0.93397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.85 9.49 37.16 0.35 -2.50 16 2 C 0.18 3.25 2.84 -67.93 -0.19 3.06 16 3 H 0.05 0.89 7.56 -51.93 -0.39 0.50 16 4 C -0.13 -1.91 4.29 -26.73 -0.11 -2.02 16 5 C 0.14 2.16 2.52 -67.93 -0.17 1.99 16 6 H 0.10 2.05 7.05 -51.93 -0.37 1.68 16 7 C -0.16 -2.02 9.48 37.16 0.35 -1.67 16 8 N -0.71 -9.34 4.45 -53.80 -0.24 -9.58 16 9 C 0.51 7.49 7.86 -10.98 -0.09 7.40 16 10 O -0.53 -9.78 15.33 5.56 0.09 -9.70 16 11 C 0.10 1.25 6.15 -5.19 -0.03 1.21 16 12 N -0.71 -9.06 5.52 -62.58 -0.35 -9.41 16 13 C 0.59 8.13 7.81 -12.54 -0.10 8.04 16 14 O -0.54 -8.97 16.98 5.26 0.09 -8.88 16 15 C -0.24 -2.77 6.31 -103.28 -0.65 -3.42 16 16 C -0.16 -1.66 11.01 -37.46 -0.41 -2.07 16 17 C -0.04 -0.34 12.03 29.30 0.35 0.01 16 18 O -0.17 -1.63 10.52 7.67 0.08 -1.55 16 19 C 0.03 0.27 11.61 30.08 0.35 0.62 16 20 N -0.73 -17.49 4.49 -53.43 -0.24 -17.73 16 21 C -0.33 -9.02 9.93 -15.06 -0.15 -9.17 16 22 H 0.06 1.70 7.83 -52.48 -0.41 1.29 16 23 C -0.04 -1.26 5.50 -17.43 -0.10 -1.35 16 24 N -0.94 -29.23 13.70 55.49 0.76 -28.47 16 25 Si 1.08 26.47 29.92 -169.99 -5.09 21.38 16 26 H -0.30 -7.16 7.11 56.52 0.40 -6.76 16 27 H -0.30 -6.86 7.11 56.52 0.40 -6.46 16 28 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 29 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.40 4.06 8.60 -40.82 -0.35 3.71 16 38 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.10 1.24 8.14 -51.93 -0.42 0.81 16 40 H 0.41 4.98 6.41 -40.82 -0.26 4.72 16 41 H 0.16 1.46 8.06 -52.48 -0.42 1.04 16 42 H 0.21 0.79 8.06 -52.49 -0.42 0.36 16 43 H 0.21 1.46 7.47 -52.49 -0.39 1.07 16 44 H 0.37 9.14 6.63 -40.82 -0.27 8.87 16 45 H 0.25 7.74 6.77 -40.82 -0.28 7.46 16 LS Contribution 384.94 15.07 5.80 5.80 Total: -1.00 -36.69 384.94 -6.28 -42.97 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: -6.59 Total: 15.04 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: -0.60 Total: 0.12 kcal Atomic # 7 Polarization: -65.12 SS G_CDS: -0.06 Total: -65.18 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: 0.26 Total: -20.13 kcal Atomic # 14 Polarization: 26.47 SS G_CDS: -5.09 Total: 21.38 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.69 -6.28 -42.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134421232.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.463 kcal (2) G-P(sol) polarization free energy of solvation -36.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds