Wall clock time and date at job start Tue Mar 31 2020 14:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.52997 * 109.47127 * 240.00426 * 2 1 3 5 5 C 1.53001 * 109.47049 * 174.99763 * 4 2 1 6 6 H 1.08995 * 109.47139 * 304.99688 * 5 4 2 7 7 C 1.53005 * 109.46852 * 185.00062 * 5 4 2 8 8 N 1.46496 * 109.46991 * 65.00027 * 5 4 2 9 9 C 1.34776 * 119.99893 * 204.99554 * 8 5 4 10 10 O 1.21281 * 120.00297 * 0.02562 * 9 8 5 11 11 C 1.50696 * 120.00194 * 179.97438 * 9 8 5 12 12 N 1.46496 * 109.47456 * 180.02562 * 11 9 8 13 13 C 1.34779 * 120.00130 * 180.02562 * 12 11 9 14 14 O 1.21613 * 120.00367 * 0.02562 * 13 12 11 15 15 C 1.47384 * 119.99706 * 180.02562 * 13 12 11 16 16 C 1.47020 * 127.18779 * 180.02562 * 15 13 12 17 17 C 1.34185 * 105.95170 * 179.97438 * 16 15 13 18 18 O 1.34211 * 109.12450 * 359.97438 * 17 16 15 19 19 C 1.33656 * 110.90809 * 359.72753 * 18 17 16 20 20 N 1.46492 * 109.47363 * 120.00126 * 2 1 3 21 21 C 1.36940 * 120.00114 * 275.00271 * 20 2 1 22 22 H 1.07993 * 119.99751 * 359.97438 * 21 20 2 23 23 C 1.38813 * 120.00020 * 179.97438 * 21 20 2 24 24 N 1.31623 * 120.00145 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99789 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46987 * 90.00577 * 25 23 21 27 27 H 1.48502 * 109.47063 * 210.00262 * 25 23 21 28 28 H 1.48499 * 109.47321 * 330.00080 * 25 23 21 29 29 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 30 30 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 31 31 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46934 * 294.99762 * 4 2 1 33 33 H 1.09006 * 109.47500 * 54.99635 * 4 2 1 34 34 H 1.08992 * 109.47402 * 59.99707 * 7 5 4 35 35 H 1.09000 * 109.46659 * 180.02562 * 7 5 4 36 36 H 1.09004 * 109.46986 * 299.99593 * 7 5 4 37 37 H 0.97002 * 119.99990 * 25.00215 * 8 5 4 38 38 H 1.08996 * 109.47626 * 300.00982 * 11 9 8 39 39 H 1.09007 * 109.47016 * 60.00360 * 11 9 8 40 40 H 0.96995 * 119.99973 * 0.02562 * 12 11 9 41 41 H 1.08000 * 127.02605 * 359.97438 * 16 15 13 42 42 H 1.07997 * 125.43512 * 179.97438 * 17 16 15 43 43 H 1.07995 * 125.80277 * 180.28846 * 19 18 17 44 44 H 0.97005 * 120.00153 * 94.99794 * 20 2 1 45 45 H 0.96993 * 119.99993 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 3.5649 -0.6131 -1.3137 6 1 3.8571 0.4359 -1.2678 7 6 4.0645 -1.2248 -2.6242 8 7 4.1537 -1.3341 -0.1825 9 6 5.3748 -0.9910 0.2732 10 8 5.9860 -0.0851 -0.2529 11 6 5.9804 -1.7322 1.4372 12 7 7.3009 -1.1738 1.7381 13 6 8.0340 -1.6835 2.7477 14 8 7.5996 -2.6073 3.4086 15 6 9.3623 -1.1213 3.0507 16 6 10.2896 -1.5520 4.1071 17 6 11.3646 -0.7558 4.0013 18 8 11.1756 0.1061 2.9900 19 6 9.9913 -0.0974 2.4049 20 7 2.0184 -0.6906 1.1961 21 6 2.1492 -0.0075 2.3757 22 1 1.8927 1.0404 2.4241 23 6 2.6115 -0.6620 3.5092 24 7 2.9246 -1.9391 3.4501 25 14 2.7905 0.2700 5.1181 26 1 1.5227 0.1797 5.8862 27 1 3.8947 -0.3238 5.9139 28 1 3.0964 1.6950 4.8334 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7517 -1.7714 -1.2056 33 1 1.6054 -0.2616 -2.1370 34 1 3.6264 -0.6884 -3.4658 35 1 5.1509 -1.1482 -2.6699 36 1 3.7723 -2.2739 -2.6701 37 1 3.6648 -2.0584 0.2385 38 1 5.3350 -1.6284 2.3094 39 1 6.0810 -2.7874 1.1832 40 1 7.6476 -0.4372 1.2107 41 1 10.1369 -2.3468 4.8222 42 1 12.2418 -0.8014 4.6296 43 1 9.5978 0.4566 1.5655 44 1 2.2491 -1.6318 1.1525 45 1 3.2479 -2.3963 4.2420 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134421233.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:18 Heat of formation + Delta-G solvation = -45.764838 kcal Electronic energy + Delta-G solvation = -28062.843416 eV Core-core repulsion = 24082.631310 eV Total energy + Delta-G solvation = -3980.212106 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.57703 -39.74545 -38.73356 -36.89287 -34.42162 -33.92383 -32.86612 -32.32687 -30.85649 -30.00820 -28.60629 -27.17962 -26.34323 -23.67391 -23.37343 -21.53528 -21.22427 -20.30991 -19.96935 -19.67977 -18.58595 -17.20144 -16.61106 -16.21495 -16.17263 -15.63557 -15.38800 -15.11850 -14.84572 -14.60045 -14.16414 -13.81994 -13.69278 -13.34115 -13.11829 -12.97449 -12.78300 -12.62075 -12.41483 -12.25168 -12.03437 -11.86712 -11.75696 -11.68887 -11.02837 -10.84695 -10.74737 -10.41301 -10.25534 -9.92897 -9.84642 -9.83708 -9.69296 -9.41369 -9.01721 -8.92621 -8.74363 -8.46477 -6.96912 -5.81323 -3.08143 1.34740 2.03890 2.83576 3.10021 3.22043 3.43425 3.49977 3.53298 3.55853 3.91889 4.54425 4.58668 4.67563 5.01049 5.06880 5.22429 5.37797 5.46715 5.50163 5.53321 5.60786 5.63561 5.78635 5.84563 5.86474 5.91745 5.97371 6.10372 6.20834 6.21247 6.30097 6.33608 6.37780 6.50829 6.57398 6.59800 6.82916 6.86182 7.01116 7.08321 7.69547 7.76004 8.03879 8.37817 8.47348 8.71363 9.49759 10.02472 10.37938 11.40853 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.011693 B = 0.004121 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2393.956425 B = 6792.858461 C = 8493.747137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.169 3.831 3 H 0.047 0.953 4 C -0.134 4.134 5 C 0.150 3.850 6 H 0.084 0.916 7 C -0.162 4.162 8 N -0.689 5.689 9 C 0.527 3.473 10 O -0.568 6.568 11 C 0.096 3.904 12 N -0.710 5.710 13 C 0.582 3.418 14 O -0.531 6.531 15 C -0.227 4.227 16 C -0.164 4.164 17 C -0.046 4.046 18 O -0.176 6.176 19 C 0.019 3.981 20 N -0.717 5.717 21 C -0.233 4.233 22 H 0.067 0.933 23 C -0.008 4.008 24 N -0.931 5.931 25 Si 0.896 3.104 26 H -0.291 1.291 27 H -0.290 1.290 28 H -0.285 1.285 29 H 0.052 0.948 30 H 0.035 0.965 31 H 0.045 0.955 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.054 0.946 37 H 0.408 0.592 38 H 0.130 0.870 39 H 0.090 0.910 40 H 0.404 0.596 41 H 0.159 0.841 42 H 0.208 0.792 43 H 0.213 0.787 44 H 0.377 0.623 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.323 0.935 -8.094 13.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.060 3.940 3 H 0.065 0.935 4 C -0.173 4.173 5 C 0.046 3.954 6 H 0.102 0.898 7 C -0.221 4.221 8 N -0.341 5.341 9 C 0.313 3.687 10 O -0.449 6.449 11 C -0.030 4.030 12 N -0.364 5.364 13 C 0.369 3.631 14 O -0.408 6.408 15 C -0.232 4.232 16 C -0.183 4.183 17 C -0.112 4.112 18 O -0.072 6.072 19 C -0.051 4.051 20 N -0.360 5.360 21 C -0.364 4.364 22 H 0.085 0.915 23 C -0.204 4.204 24 N -0.580 5.580 25 Si 0.728 3.272 26 H -0.219 1.219 27 H -0.217 1.217 28 H -0.210 1.210 29 H 0.071 0.929 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.246 0.754 38 H 0.148 0.852 39 H 0.108 0.892 40 H 0.241 0.759 41 H 0.177 0.823 42 H 0.224 0.776 43 H 0.229 0.771 44 H 0.212 0.788 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 10.619 1.227 -7.943 13.317 hybrid contribution -0.273 0.049 1.107 1.141 sum 10.346 1.275 -6.836 12.466 Atomic orbital electron populations 1.22427 0.99325 1.00744 0.99914 1.20280 0.91706 0.95696 0.86368 0.93455 1.22217 0.93844 1.01745 0.99465 1.20828 0.92622 0.97247 0.84750 0.89831 1.22208 1.01693 1.00924 0.97241 1.45855 1.17375 1.37472 1.33402 1.20222 0.81821 0.83288 0.83349 1.90581 1.62354 1.31692 1.60233 1.21238 0.84796 0.97450 0.99549 1.45481 1.18278 1.38199 1.34483 1.17194 0.83236 0.82715 0.79937 1.90823 1.71635 1.28801 1.49553 1.21578 0.97589 1.02083 1.01935 1.22808 0.92796 1.02482 1.00224 1.23911 1.01529 0.92754 0.93034 1.83780 1.34328 1.50073 1.38982 1.24530 0.83948 0.98068 0.98581 1.42455 1.78053 1.10132 1.05394 1.19167 1.36214 0.93771 0.87251 0.91512 1.24585 1.02283 0.95936 0.97561 1.69536 1.51013 1.08257 1.29163 0.86351 0.77341 0.78908 0.84597 1.21881 1.21661 1.21050 0.92866 0.94619 0.93589 0.91642 0.90765 0.92072 0.92450 0.92733 0.75363 0.85247 0.89169 0.75895 0.82292 0.77575 0.77075 0.78756 0.93260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.74 9.49 37.16 0.35 -2.39 16 2 C 0.17 3.03 2.89 -67.93 -0.20 2.83 16 3 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 4 C -0.13 -1.90 4.43 -26.73 -0.12 -2.02 16 5 C 0.15 2.25 2.57 -67.93 -0.17 2.08 16 6 H 0.08 1.42 7.58 -51.93 -0.39 1.03 16 7 C -0.16 -2.02 9.48 37.16 0.35 -1.67 16 8 N -0.69 -11.57 3.80 -53.81 -0.20 -11.78 16 9 C 0.53 9.63 7.86 -10.99 -0.09 9.55 16 10 O -0.57 -11.07 15.33 5.56 0.09 -10.98 16 11 C 0.10 1.78 6.15 -5.20 -0.03 1.74 16 12 N -0.71 -11.99 5.52 -62.58 -0.35 -12.33 16 13 C 0.58 10.47 7.81 -12.54 -0.10 10.37 16 14 O -0.53 -11.60 16.98 5.27 0.09 -11.51 16 15 C -0.23 -3.31 6.31 -103.28 -0.65 -3.96 16 16 C -0.16 -2.08 11.01 -37.45 -0.41 -2.49 16 17 C -0.05 -0.46 12.03 29.30 0.35 -0.10 16 18 O -0.18 -1.94 10.52 7.66 0.08 -1.86 16 19 C 0.02 0.22 11.61 30.07 0.35 0.57 16 20 N -0.72 -15.66 3.84 -53.43 -0.21 -15.87 16 21 C -0.23 -5.96 9.93 -15.06 -0.15 -6.11 16 22 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 23 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 24 N -0.93 -25.32 12.78 55.49 0.71 -24.61 16 25 Si 0.90 22.24 29.55 -169.99 -5.02 17.22 16 26 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 27 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 28 H -0.28 -7.02 7.11 56.52 0.40 -6.61 16 29 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.41 7.06 6.51 -40.82 -0.27 6.79 16 38 H 0.13 2.90 7.86 -51.93 -0.41 2.49 16 39 H 0.09 1.56 8.14 -51.92 -0.42 1.13 16 40 H 0.40 6.05 6.41 -40.82 -0.26 5.79 16 41 H 0.16 1.92 8.06 -52.49 -0.42 1.50 16 42 H 0.21 1.14 8.06 -52.49 -0.42 0.71 16 43 H 0.21 1.76 7.47 -52.49 -0.39 1.37 16 44 H 0.38 8.44 5.70 -40.82 -0.23 8.21 16 45 H 0.26 7.14 8.31 -40.82 -0.34 6.81 16 LS Contribution 381.90 15.07 5.76 5.76 Total: -1.00 -31.82 381.90 -6.24 -38.06 By element: Atomic # 1 Polarization: 26.37 SS G_CDS: -6.57 Total: 19.80 kcal Atomic # 6 Polarization: 8.70 SS G_CDS: -0.61 Total: 8.09 kcal Atomic # 7 Polarization: -64.54 SS G_CDS: -0.05 Total: -64.58 kcal Atomic # 8 Polarization: -24.60 SS G_CDS: 0.26 Total: -24.35 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.82 -6.24 -38.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134421233.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.709 kcal (2) G-P(sol) polarization free energy of solvation -31.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds