Wall clock time and date at job start Tue Mar 31 2020 14:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47123 * 2 1 4 4 C 1.53004 * 109.46787 * 239.99787 * 2 1 3 5 5 C 1.52999 * 109.47016 * 175.00410 * 4 2 1 6 6 H 1.09000 * 109.46953 * 305.00042 * 5 4 2 7 7 C 1.52995 * 109.47123 * 185.00218 * 5 4 2 8 8 N 1.46496 * 109.47336 * 64.99925 * 5 4 2 9 9 C 1.36940 * 120.00352 * 205.00137 * 8 5 4 10 10 H 1.07997 * 119.99541 * 359.97438 * 9 8 5 11 11 C 1.38814 * 120.00023 * 180.02562 * 9 8 5 12 12 N 1.31621 * 120.00009 * 180.02562 * 11 9 8 13 13 Si 1.86799 * 119.99915 * 359.97438 * 11 9 8 14 14 H 1.48499 * 109.47136 * 90.00221 * 13 11 9 15 15 H 1.48507 * 109.46971 * 210.00168 * 13 11 9 16 16 H 1.48499 * 109.47451 * 330.00001 * 13 11 9 17 17 N 1.46494 * 109.46976 * 120.00407 * 2 1 3 18 18 C 1.34779 * 120.00059 * 274.99807 * 17 2 1 19 19 O 1.21288 * 119.99651 * 359.97438 * 18 17 2 20 20 C 1.50701 * 120.00421 * 179.97438 * 18 17 2 21 21 N 1.46497 * 109.47254 * 179.97438 * 20 18 17 22 22 C 1.34773 * 120.00174 * 180.02562 * 21 20 18 23 23 O 1.21618 * 120.00100 * 359.97438 * 22 21 20 24 24 C 1.47376 * 120.00312 * 179.97438 * 22 21 20 25 25 C 1.47019 * 127.19544 * 180.28123 * 24 22 21 26 26 C 1.34177 * 105.95809 * 180.17417 * 25 24 22 27 27 O 1.34214 * 109.12112 * 359.60541 * 26 25 24 28 28 C 1.33655 * 110.90867 * 0.26473 * 27 26 25 29 29 H 1.09003 * 109.47402 * 300.00474 * 1 2 3 30 30 H 1.09009 * 109.47298 * 59.99691 * 1 2 3 31 31 H 1.09000 * 109.47544 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47193 * 295.00093 * 4 2 1 33 33 H 1.08998 * 109.47138 * 55.00411 * 4 2 1 34 34 H 1.09000 * 109.47063 * 299.99757 * 7 5 4 35 35 H 1.08997 * 109.47396 * 60.00062 * 7 5 4 36 36 H 1.09006 * 109.47176 * 180.02562 * 7 5 4 37 37 H 0.97006 * 119.99843 * 25.00010 * 8 5 4 38 38 H 0.96992 * 119.99940 * 179.97438 * 12 11 9 39 39 H 0.97004 * 120.00469 * 94.99119 * 17 2 1 40 40 H 1.09003 * 109.46482 * 60.00113 * 20 18 17 41 41 H 1.08996 * 109.46795 * 299.99983 * 20 18 17 42 42 H 0.97003 * 120.00150 * 0.02562 * 21 20 18 43 43 H 1.08005 * 127.02536 * 0.08201 * 25 24 22 44 44 H 1.08002 * 125.44341 * 179.87398 * 26 25 24 45 45 H 1.08001 * 125.79936 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5648 -0.6135 -1.3137 6 1 3.8570 0.4356 -1.2678 7 6 4.0643 -1.2252 -2.6240 8 7 4.1536 -1.3344 -0.1825 9 6 5.3943 -0.9858 0.2806 10 1 5.9388 -0.1798 -0.1885 11 6 5.9524 -1.6693 1.3522 12 7 7.1447 -1.3340 1.7976 13 14 5.0107 -3.0640 2.1630 14 1 5.3474 -4.3449 1.4913 15 1 5.3838 -3.1446 3.5981 16 1 3.5522 -2.8113 2.0442 17 7 2.0183 -0.6907 1.1961 18 6 2.1470 -0.0184 2.3571 19 8 1.8590 1.1585 2.4115 20 6 2.6488 -0.7290 3.5877 21 7 2.6988 0.2125 4.7090 22 6 3.1203 -0.2032 5.9197 23 8 3.4588 -1.3600 6.0816 24 6 3.1712 0.7441 7.0476 25 6 3.6069 0.4649 8.4237 26 6 3.4782 1.6207 9.0930 27 8 3.0186 2.5643 8.2565 28 6 2.8283 2.0643 7.0317 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.7515 -1.7716 -1.2056 33 1 1.6053 -0.2618 -2.1370 34 1 3.7721 -2.2743 -2.6699 35 1 3.6263 -0.6888 -3.4657 36 1 5.1508 -1.1488 -2.6698 37 1 3.6646 -2.0586 0.2386 38 1 7.5345 -1.8113 2.5466 39 1 2.2489 -1.6319 1.1526 40 1 3.6479 -1.1215 3.3985 41 1 1.9758 -1.5507 3.8325 42 1 2.4284 1.1352 4.5801 43 1 3.9574 -0.4782 8.8163 44 1 3.7117 1.7693 10.1370 45 1 2.4645 2.6123 6.1751 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134421235.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:24 Heat of formation + Delta-G solvation = -37.926046 kcal Electronic energy + Delta-G solvation = -28200.065435 eV Core-core repulsion = 24220.193245 eV Total energy + Delta-G solvation = -3979.872190 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.62373 -39.98486 -38.91288 -37.10351 -34.60253 -34.12071 -32.93861 -32.39581 -31.14401 -30.10865 -29.18277 -27.43610 -26.45792 -23.51747 -23.37420 -21.59759 -21.34863 -20.66191 -20.13454 -19.78424 -18.68698 -17.61237 -16.78172 -16.49770 -16.25992 -15.78736 -15.61564 -15.32520 -14.91052 -14.69854 -14.39820 -14.19028 -13.58014 -13.41951 -13.26269 -13.06528 -12.96930 -12.69797 -12.56103 -12.47572 -12.26653 -12.10610 -12.00808 -11.81231 -11.17463 -10.90914 -10.80705 -10.56523 -10.30731 -10.05192 -9.98414 -9.90182 -9.66925 -9.59962 -9.07460 -9.04737 -8.89052 -8.66412 -7.29806 -5.80191 -3.15509 1.28363 1.98979 2.77677 2.86035 2.98411 3.13601 3.33269 3.43815 3.48773 3.68840 4.49481 4.50518 4.60487 4.81506 4.96608 5.03637 5.21261 5.24213 5.38019 5.44407 5.48414 5.51348 5.56436 5.67959 5.74236 5.77713 5.81694 5.82538 5.98265 6.09522 6.16959 6.17620 6.26124 6.34858 6.39426 6.41457 6.72868 6.81690 6.82692 6.95855 7.59464 7.76054 7.94979 8.31207 8.38185 8.45196 9.14805 9.86587 10.05844 11.38389 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.013494 B = 0.004080 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.473725 B = 6860.521793 C = 8136.991416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.148 3.852 3 H 0.089 0.911 4 C -0.137 4.137 5 C 0.175 3.825 6 H 0.057 0.943 7 C -0.165 4.165 8 N -0.742 5.742 9 C -0.239 4.239 10 H 0.090 0.910 11 C 0.006 3.994 12 N -0.929 5.929 13 Si 0.877 3.123 14 H -0.287 1.287 15 H -0.282 1.282 16 H -0.285 1.285 17 N -0.697 5.697 18 C 0.525 3.475 19 O -0.553 6.553 20 C 0.096 3.904 21 N -0.709 5.709 22 C 0.586 3.414 23 O -0.534 6.534 24 C -0.229 4.229 25 C -0.163 4.163 26 C -0.045 4.045 27 O -0.175 6.175 28 C 0.023 3.977 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.080 0.920 34 H 0.044 0.956 35 H 0.039 0.961 36 H 0.057 0.943 37 H 0.353 0.647 38 H 0.260 0.740 39 H 0.401 0.599 40 H 0.106 0.894 41 H 0.093 0.907 42 H 0.408 0.592 43 H 0.160 0.840 44 H 0.209 0.791 45 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.068 4.715 5.237 15.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.044 3.956 3 H 0.107 0.893 4 C -0.176 4.176 5 C 0.066 3.934 6 H 0.075 0.925 7 C -0.225 4.225 8 N -0.387 5.387 9 C -0.369 4.369 10 H 0.107 0.893 11 C -0.190 4.190 12 N -0.577 5.577 13 Si 0.709 3.291 14 H -0.214 1.214 15 H -0.208 1.208 16 H -0.213 1.213 17 N -0.350 5.350 18 C 0.311 3.689 19 O -0.432 6.432 20 C -0.031 4.031 21 N -0.364 5.364 22 C 0.373 3.627 23 O -0.411 6.411 24 C -0.234 4.234 25 C -0.182 4.182 26 C -0.110 4.110 27 O -0.070 6.070 28 C -0.047 4.047 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.098 0.902 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.077 0.923 37 H 0.187 0.813 38 H 0.070 0.930 39 H 0.239 0.761 40 H 0.124 0.876 41 H 0.111 0.889 42 H 0.245 0.755 43 H 0.177 0.823 44 H 0.225 0.775 45 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -13.840 5.107 5.493 15.741 hybrid contribution -0.326 -1.459 0.414 1.552 sum -14.166 3.647 5.907 15.775 Atomic orbital electron populations 1.22208 0.95918 1.01748 1.02207 1.20909 0.92700 0.97975 0.84032 0.89268 1.22262 0.97899 1.00626 0.96767 1.20249 0.89331 0.96255 0.87585 0.92519 1.22397 1.02078 1.00181 0.97807 1.42832 1.19332 1.40127 1.36377 1.19036 0.91642 1.14795 1.11393 0.89253 1.24650 0.96488 0.99144 0.98715 1.69659 1.15926 1.43421 1.28698 0.86903 0.78187 0.83881 0.80082 1.21383 1.20817 1.21302 1.46045 1.65729 1.14321 1.08884 1.20123 0.76883 0.87109 0.84805 1.90609 1.51698 1.15688 1.85227 1.21263 1.04337 0.92455 0.85046 1.45436 1.67764 1.14652 1.08565 1.17231 0.77010 0.87052 0.81405 1.90816 1.48049 1.18531 1.83740 1.21480 1.11610 0.94489 0.95805 1.22796 1.03998 0.99954 0.91495 1.23923 1.04074 0.86693 0.96359 1.83788 1.65094 1.39371 1.18760 1.24536 1.00103 0.93297 0.86792 0.92332 0.91775 0.92779 0.91770 0.90191 0.93696 0.94216 0.92344 0.81310 0.92970 0.76053 0.87621 0.88878 0.75459 0.82266 0.77485 0.77005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.88 9.48 37.16 0.35 -1.52 16 2 C 0.15 2.10 2.58 -67.93 -0.17 1.93 16 3 H 0.09 1.44 7.58 -51.93 -0.39 1.04 16 4 C -0.14 -1.81 4.43 -26.73 -0.12 -1.93 16 5 C 0.17 3.01 2.89 -67.94 -0.20 2.82 16 6 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 7 C -0.16 -2.64 9.49 37.15 0.35 -2.28 16 8 N -0.74 -15.65 3.65 -53.43 -0.19 -15.84 16 9 C -0.24 -6.32 10.41 -15.06 -0.16 -6.48 16 10 H 0.09 2.61 8.06 -52.49 -0.42 2.19 16 11 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 12 N -0.93 -28.76 13.97 55.49 0.78 -27.99 16 13 Si 0.88 21.25 25.13 -169.99 -4.27 16.98 16 14 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 15 H -0.28 -7.42 7.11 56.52 0.40 -7.02 16 16 H -0.29 -5.79 4.59 56.52 0.26 -5.54 16 17 N -0.70 -11.27 3.80 -53.81 -0.20 -11.48 16 18 C 0.53 9.31 7.86 -10.98 -0.09 9.22 16 19 O -0.55 -10.41 15.33 5.55 0.09 -10.33 16 20 C 0.10 1.73 5.71 -5.20 -0.03 1.70 16 21 N -0.71 -11.78 5.52 -62.58 -0.35 -12.12 16 22 C 0.59 10.39 7.81 -12.54 -0.10 10.29 16 23 O -0.53 -11.52 16.98 5.26 0.09 -11.43 16 24 C -0.23 -3.29 6.31 -103.28 -0.65 -3.94 16 25 C -0.16 -2.04 11.01 -37.46 -0.41 -2.45 16 26 C -0.04 -0.43 12.03 29.30 0.35 -0.08 16 27 O -0.18 -1.88 10.52 7.65 0.08 -1.80 16 28 C 0.02 0.26 11.61 30.08 0.35 0.61 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.35 7.15 3.78 -40.82 -0.15 7.00 16 38 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 39 H 0.40 6.51 5.11 -40.82 -0.21 6.30 16 40 H 0.11 2.26 4.99 -51.93 -0.26 2.00 16 41 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 42 H 0.41 5.92 6.41 -40.82 -0.26 5.66 16 43 H 0.16 1.89 8.06 -52.48 -0.42 1.47 16 44 H 0.21 1.10 8.06 -52.49 -0.42 0.68 16 45 H 0.21 1.69 7.47 -52.49 -0.39 1.30 16 LS Contribution 370.02 15.07 5.58 5.58 Total: -1.00 -34.83 370.02 -5.46 -40.30 By element: Atomic # 1 Polarization: 26.62 SS G_CDS: -6.44 Total: 20.18 kcal Atomic # 6 Polarization: 8.57 SS G_CDS: -0.61 Total: 7.96 kcal Atomic # 7 Polarization: -67.46 SS G_CDS: 0.03 Total: -67.43 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: 0.25 Total: -23.56 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.27 Total: 16.98 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.83 -5.46 -40.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134421235.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.372 kcal (2) G-P(sol) polarization free energy of solvation -34.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds