Wall clock time and date at job start Tue Mar 31 2020 14:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47123 * 2 1 4 4 C 1.53004 * 109.46787 * 239.99787 * 2 1 3 5 5 C 1.52999 * 109.47016 * 175.00410 * 4 2 1 6 6 H 1.09000 * 109.46953 * 305.00042 * 5 4 2 7 7 C 1.52995 * 109.47123 * 185.00218 * 5 4 2 8 8 N 1.46496 * 109.47336 * 64.99925 * 5 4 2 9 9 C 1.36940 * 120.00352 * 205.00137 * 8 5 4 10 10 H 1.07997 * 119.99541 * 359.97438 * 9 8 5 11 11 C 1.38814 * 120.00023 * 180.02562 * 9 8 5 12 12 N 1.31621 * 120.00009 * 180.02562 * 11 9 8 13 13 Si 1.86799 * 119.99915 * 359.97438 * 11 9 8 14 14 H 1.48499 * 109.47136 * 90.00221 * 13 11 9 15 15 H 1.48507 * 109.46971 * 210.00168 * 13 11 9 16 16 H 1.48499 * 109.47451 * 330.00001 * 13 11 9 17 17 N 1.46494 * 109.46976 * 120.00407 * 2 1 3 18 18 C 1.34779 * 120.00059 * 274.99807 * 17 2 1 19 19 O 1.21288 * 119.99651 * 359.97438 * 18 17 2 20 20 C 1.50701 * 120.00421 * 179.97438 * 18 17 2 21 21 N 1.46497 * 109.47254 * 179.97438 * 20 18 17 22 22 C 1.34773 * 120.00174 * 180.02562 * 21 20 18 23 23 O 1.21618 * 120.00100 * 359.97438 * 22 21 20 24 24 C 1.47376 * 120.00312 * 179.97438 * 22 21 20 25 25 C 1.47019 * 127.19544 * 180.28123 * 24 22 21 26 26 C 1.34177 * 105.95809 * 180.17417 * 25 24 22 27 27 O 1.34214 * 109.12112 * 359.60541 * 26 25 24 28 28 C 1.33655 * 110.90867 * 0.26473 * 27 26 25 29 29 H 1.09003 * 109.47402 * 300.00474 * 1 2 3 30 30 H 1.09009 * 109.47298 * 59.99691 * 1 2 3 31 31 H 1.09000 * 109.47544 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47193 * 295.00093 * 4 2 1 33 33 H 1.08998 * 109.47138 * 55.00411 * 4 2 1 34 34 H 1.09000 * 109.47063 * 299.99757 * 7 5 4 35 35 H 1.08997 * 109.47396 * 60.00062 * 7 5 4 36 36 H 1.09006 * 109.47176 * 180.02562 * 7 5 4 37 37 H 0.97006 * 119.99843 * 25.00010 * 8 5 4 38 38 H 0.96992 * 119.99940 * 179.97438 * 12 11 9 39 39 H 0.97004 * 120.00469 * 94.99119 * 17 2 1 40 40 H 1.09003 * 109.46482 * 60.00113 * 20 18 17 41 41 H 1.08996 * 109.46795 * 299.99983 * 20 18 17 42 42 H 0.97003 * 120.00150 * 0.02562 * 21 20 18 43 43 H 1.08005 * 127.02536 * 0.08201 * 25 24 22 44 44 H 1.08002 * 125.44341 * 179.87398 * 26 25 24 45 45 H 1.08001 * 125.79936 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5648 -0.6135 -1.3137 6 1 3.8570 0.4356 -1.2678 7 6 4.0643 -1.2252 -2.6240 8 7 4.1536 -1.3344 -0.1825 9 6 5.3943 -0.9858 0.2806 10 1 5.9388 -0.1798 -0.1885 11 6 5.9524 -1.6693 1.3522 12 7 7.1447 -1.3340 1.7976 13 14 5.0107 -3.0640 2.1630 14 1 5.3474 -4.3449 1.4913 15 1 5.3838 -3.1446 3.5981 16 1 3.5522 -2.8113 2.0442 17 7 2.0183 -0.6907 1.1961 18 6 2.1470 -0.0184 2.3571 19 8 1.8590 1.1585 2.4115 20 6 2.6488 -0.7290 3.5877 21 7 2.6988 0.2125 4.7090 22 6 3.1203 -0.2032 5.9197 23 8 3.4588 -1.3600 6.0816 24 6 3.1712 0.7441 7.0476 25 6 3.6069 0.4649 8.4237 26 6 3.4782 1.6207 9.0930 27 8 3.0186 2.5643 8.2565 28 6 2.8283 2.0643 7.0317 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.7515 -1.7716 -1.2056 33 1 1.6053 -0.2618 -2.1370 34 1 3.7721 -2.2743 -2.6699 35 1 3.6263 -0.6888 -3.4657 36 1 5.1508 -1.1488 -2.6698 37 1 3.6646 -2.0586 0.2386 38 1 7.5345 -1.8113 2.5466 39 1 2.2489 -1.6319 1.1526 40 1 3.6479 -1.1215 3.3985 41 1 1.9758 -1.5507 3.8325 42 1 2.4284 1.1352 4.5801 43 1 3.9574 -0.4782 8.8163 44 1 3.7117 1.7693 10.1370 45 1 2.4645 2.6123 6.1751 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134421235.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:23 Heat of formation + Delta-G solvation = -65.256267 kcal Electronic energy + Delta-G solvation = -28201.250562 eV Core-core repulsion = 24220.193245 eV Total energy + Delta-G solvation = -3981.057318 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.52709 -41.35665 -40.28466 -38.53291 -36.11919 -35.58029 -34.21141 -33.90133 -32.63163 -31.17573 -30.72257 -28.70227 -27.59235 -25.34011 -24.65879 -22.68904 -22.40263 -22.03391 -21.43236 -21.14808 -19.73868 -19.60334 -18.03822 -17.77419 -17.26508 -17.09822 -16.90104 -16.69078 -16.47607 -16.05760 -15.75700 -15.62611 -15.03201 -14.87678 -14.52156 -14.45830 -14.15139 -14.11812 -13.88698 -13.85624 -13.41603 -13.38527 -13.20531 -12.89827 -12.75702 -12.55036 -12.39635 -12.08304 -11.81977 -11.66418 -11.46023 -11.42476 -11.08187 -10.96882 -10.93800 -10.44074 -10.04735 -9.79524 -9.23066 -8.01828 -5.31620 0.25695 1.08126 1.13270 1.30558 1.47506 1.48429 1.67951 2.01734 2.18168 2.38758 2.44532 3.31404 3.46403 3.55161 3.71159 3.74472 3.82753 3.99765 4.09522 4.13435 4.22250 4.33989 4.50478 4.55765 4.64877 4.71513 4.82038 4.86551 4.89499 4.93510 5.01836 5.06010 5.10057 5.14974 5.28675 5.37012 5.38610 5.57066 5.62925 5.81757 5.92452 6.21068 6.30970 6.41464 6.98165 7.07897 7.10775 7.86422 8.04539 9.20048 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.013494 B = 0.004080 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.473725 B = 6860.521793 C = 8136.991416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.143 3.857 3 H 0.066 0.934 4 C -0.123 4.123 5 C 0.165 3.835 6 H 0.036 0.964 7 C -0.157 4.157 8 N -0.740 5.740 9 C -0.207 4.207 10 H 0.052 0.948 11 C -0.060 4.060 12 N -0.985 5.985 13 Si 0.937 3.063 14 H -0.285 1.285 15 H -0.317 1.317 16 H -0.232 1.232 17 N -0.694 5.694 18 C 0.524 3.476 19 O -0.567 6.567 20 C 0.093 3.907 21 N -0.702 5.702 22 C 0.582 3.418 23 O -0.584 6.584 24 C -0.271 4.271 25 C -0.199 4.199 26 C -0.016 4.016 27 O -0.172 6.172 28 C 0.048 3.952 29 H 0.043 0.957 30 H 0.088 0.912 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.117 0.883 34 H 0.054 0.946 35 H 0.074 0.926 36 H 0.024 0.976 37 H 0.361 0.639 38 H 0.251 0.749 39 H 0.402 0.598 40 H 0.072 0.928 41 H 0.110 0.890 42 H 0.418 0.582 43 H 0.154 0.846 44 H 0.254 0.746 45 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.535 5.250 4.451 18.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.040 3.960 3 H 0.085 0.915 4 C -0.161 4.161 5 C 0.058 3.942 6 H 0.054 0.946 7 C -0.217 4.217 8 N -0.385 5.385 9 C -0.338 4.338 10 H 0.070 0.930 11 C -0.251 4.251 12 N -0.636 5.636 13 Si 0.767 3.233 14 H -0.212 1.212 15 H -0.245 1.245 16 H -0.157 1.157 17 N -0.346 5.346 18 C 0.309 3.691 19 O -0.447 6.447 20 C -0.034 4.034 21 N -0.357 5.357 22 C 0.372 3.628 23 O -0.465 6.465 24 C -0.276 4.276 25 C -0.218 4.218 26 C -0.081 4.081 27 O -0.066 6.066 28 C -0.023 4.023 29 H 0.062 0.938 30 H 0.107 0.893 31 H 0.088 0.912 32 H 0.102 0.898 33 H 0.136 0.864 34 H 0.074 0.926 35 H 0.093 0.907 36 H 0.044 0.956 37 H 0.196 0.804 38 H 0.060 0.940 39 H 0.240 0.760 40 H 0.090 0.910 41 H 0.128 0.872 42 H 0.257 0.743 43 H 0.172 0.828 44 H 0.270 0.730 45 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -17.401 5.677 4.622 18.878 hybrid contribution 0.775 -1.467 0.582 1.759 sum -16.626 4.210 5.204 17.922 Atomic orbital electron populations 1.22110 0.93184 1.02960 1.02744 1.21104 0.94750 0.96678 0.83513 0.91536 1.22201 0.94086 1.02166 0.97695 1.20522 0.92376 0.94644 0.86690 0.94624 1.22273 1.00059 1.01244 0.98101 1.42798 1.17554 1.40649 1.37523 1.18911 0.92944 1.12256 1.09721 0.93046 1.25301 0.97434 1.02326 1.00088 1.69857 1.18461 1.45585 1.29725 0.85864 0.80206 0.80564 0.76618 1.21166 1.24546 1.15713 1.46127 1.65167 1.14288 1.09067 1.20069 0.76963 0.86948 0.85127 1.90594 1.52549 1.16126 1.85461 1.21226 1.02737 0.93538 0.85948 1.45391 1.67328 1.14944 1.08051 1.17780 0.75821 0.87020 0.82203 1.90773 1.50473 1.20733 1.84563 1.21432 1.15014 0.95480 0.95672 1.22955 1.06215 1.01285 0.91391 1.24675 1.00962 0.85027 0.97478 1.83847 1.64643 1.39453 1.18632 1.24979 0.97613 0.92078 0.87584 0.93769 0.89324 0.91181 0.89803 0.86446 0.92642 0.90701 0.95643 0.80415 0.94038 0.76046 0.91049 0.87183 0.74306 0.82785 0.72979 0.74145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 9.48 71.98 0.68 -2.21 16 2 C 0.14 3.63 2.58 44.99 0.12 3.75 16 3 H 0.07 2.02 7.58 -2.39 -0.02 2.01 16 4 C -0.12 -2.73 4.43 30.60 0.14 -2.59 16 5 C 0.17 5.35 2.89 44.99 0.13 5.48 16 6 H 0.04 1.31 8.08 -2.39 -0.02 1.29 16 7 C -0.16 -4.63 9.49 71.98 0.68 -3.94 16 8 N -0.74 -30.46 3.65 -322.96 -1.18 -31.64 16 9 C -0.21 -11.22 10.41 84.03 0.87 -10.35 16 10 H 0.05 3.16 8.06 -2.91 -0.02 3.13 16 11 C -0.06 -3.52 5.50 84.86 0.47 -3.05 16 12 N -0.98 -64.24 13.97 21.65 0.30 -63.94 16 13 Si 0.94 45.32 25.13 68.60 1.72 47.05 16 14 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 15 H -0.32 -17.26 7.11 99.48 0.71 -16.55 16 16 H -0.23 -8.91 4.59 99.48 0.46 -8.45 16 17 N -0.69 -21.03 3.80 -442.53 -1.68 -22.72 16 18 C 0.52 18.11 7.86 87.66 0.69 18.80 16 19 O -0.57 -20.91 15.33 -3.05 -0.05 -20.96 16 20 C 0.09 3.36 5.71 85.63 0.49 3.85 16 21 N -0.70 -23.63 5.52 -470.16 -2.59 -26.23 16 22 C 0.58 21.35 7.81 86.65 0.68 22.03 16 23 O -0.58 -26.51 16.98 -4.09 -0.07 -26.58 16 24 C -0.27 -7.82 6.31 -18.99 -0.12 -7.94 16 25 C -0.20 -4.95 11.01 23.65 0.26 -4.69 16 26 C -0.02 -0.27 12.03 66.89 0.80 0.53 16 27 O -0.17 -3.23 10.52 4.46 0.05 -3.19 16 28 C 0.05 1.00 11.61 67.39 0.78 1.78 16 29 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 31 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 37 H 0.36 13.82 3.78 -92.70 -0.35 13.47 16 38 H 0.25 16.06 8.31 -92.71 -0.77 15.29 16 39 H 0.40 11.89 5.11 -92.71 -0.47 11.42 16 40 H 0.07 3.12 4.99 -2.39 -0.01 3.11 16 41 H 0.11 3.52 8.14 -2.39 -0.02 3.50 16 42 H 0.42 12.03 6.41 -92.71 -0.59 11.44 16 43 H 0.15 3.85 8.06 -2.91 -0.02 3.83 16 44 H 0.25 1.66 8.06 -2.91 -0.02 1.64 16 45 H 0.24 3.29 7.47 -2.91 -0.02 3.27 16 Total: -1.00 -82.95 370.02 2.54 -80.41 By element: Atomic # 1 Polarization: 46.97 SS G_CDS: -0.63 Total: 46.34 kcal Atomic # 6 Polarization: 14.78 SS G_CDS: 6.67 Total: 21.45 kcal Atomic # 7 Polarization: -139.37 SS G_CDS: -5.15 Total: -144.52 kcal Atomic # 8 Polarization: -50.66 SS G_CDS: -0.07 Total: -50.73 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 1.72 Total: 47.05 kcal Total: -82.95 2.54 -80.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134421235.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.149 kcal (2) G-P(sol) polarization free energy of solvation -82.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds