Wall clock time and date at job start Tue Mar 31 2020 14:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35504 * 117.00284 * 2 1 4 4 C 1.39215 * 120.90054 * 359.97170 * 3 2 1 5 5 C 1.37899 * 119.39246 * 180.02562 * 4 3 2 6 6 N 1.32074 * 121.28980 * 0.02562 * 5 4 3 7 7 C 1.32187 * 121.98179 * 359.70138 * 6 5 4 8 8 O 1.35420 * 119.78169 * 180.29434 * 7 6 5 9 9 C 1.40299 * 120.43981 * 0.58288 * 7 6 5 10 10 C 1.47227 * 120.65004 * 179.70800 * 9 7 6 11 11 O 1.21635 * 119.99608 * 269.72688 * 10 9 7 12 12 N 1.34771 * 120.00241 * 89.72526 * 10 9 7 13 13 C 1.46508 * 119.99837 * 180.02562 * 12 10 9 14 14 H 1.08994 * 109.47317 * 35.00152 * 13 12 10 15 15 C 1.52999 * 109.46657 * 274.99636 * 13 12 10 16 16 C 1.53002 * 109.46662 * 155.00121 * 13 12 10 17 17 C 1.53003 * 109.47269 * 294.99336 * 16 13 12 18 18 H 1.09000 * 109.46953 * 305.00936 * 17 16 13 19 19 C 1.52996 * 109.47332 * 185.00423 * 17 16 13 20 20 N 1.46505 * 109.46807 * 65.00478 * 17 16 13 21 21 C 1.36931 * 119.99788 * 205.00000 * 20 17 16 22 22 H 1.08002 * 120.00438 * 0.02562 * 21 20 17 23 23 C 1.38817 * 119.99680 * 179.72358 * 21 20 17 24 24 N 1.31614 * 119.99888 * 0.27479 * 23 21 20 25 25 Si 1.86803 * 119.99862 * 180.27671 * 23 21 20 26 26 H 1.48496 * 109.47141 * 59.99751 * 25 23 21 27 27 H 1.48490 * 109.47071 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.46993 * 300.00028 * 25 23 21 29 29 H 1.08996 * 109.47299 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47381 * 300.00496 * 1 2 3 31 31 H 1.09000 * 109.46985 * 60.00342 * 1 2 3 32 32 H 1.08000 * 120.30015 * 0.04857 * 4 3 2 33 33 H 1.08001 * 119.35348 * 179.97438 * 5 4 3 34 34 H 0.96696 * 114.00208 * 270.29117 * 8 7 6 35 35 H 0.96999 * 120.00044 * 359.97438 * 12 10 9 36 36 H 1.09010 * 109.46692 * 179.97438 * 15 13 12 37 37 H 1.08998 * 109.47359 * 299.99941 * 15 13 12 38 38 H 1.09002 * 109.46944 * 60.00616 * 15 13 12 39 39 H 1.09000 * 109.46766 * 174.99852 * 16 13 12 40 40 H 1.08992 * 109.47398 * 54.99945 * 16 13 12 41 41 H 1.08998 * 109.47019 * 59.99816 * 19 17 16 42 42 H 1.08998 * 109.47099 * 180.02562 * 19 17 16 43 43 H 1.09002 * 109.46807 * 300.00318 * 19 17 16 44 44 H 0.97000 * 119.99792 * 24.99795 * 20 17 16 45 45 H 0.97005 * 119.99715 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0442 1.2073 0.0000 4 6 1.3045 2.3867 -0.0006 5 6 1.9627 3.5984 -0.0011 6 7 3.2819 3.6625 -0.0016 7 6 4.0355 2.5765 0.0043 8 8 5.3846 2.6941 0.0096 9 6 3.4471 1.3029 -0.0010 10 6 4.2821 0.0903 -0.0010 11 8 4.6267 -0.4107 -1.0544 12 7 4.6647 -0.4644 1.1662 13 6 5.4961 -1.6708 1.1661 14 1 6.1875 -1.6355 0.3243 15 6 4.6022 -2.9061 1.0407 16 6 6.2876 -1.7446 2.4734 17 6 7.2717 -0.5749 2.5406 18 1 7.9009 -0.5780 1.6506 19 6 8.1488 -0.7173 3.7860 20 7 6.5280 0.6855 2.6085 21 6 7.1078 1.8468 2.1723 22 1 8.1131 1.8336 1.7778 23 6 6.4010 3.0402 2.2313 24 7 5.1757 3.0562 2.7116 25 14 7.1891 4.6231 1.6291 26 1 7.5415 4.4855 0.1931 27 1 6.2341 5.7474 1.7994 28 1 8.4184 4.8948 2.4166 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 0.2250 2.3528 -0.0003 33 1 1.3882 4.5130 -0.0020 34 1 5.7797 2.7305 -0.8722 35 1 4.3902 -0.0646 2.0062 36 1 5.2208 -3.8036 1.0402 37 1 3.9108 -2.9413 1.8826 38 1 4.0383 -2.8534 0.1093 39 1 6.8377 -2.6848 2.5124 40 1 5.6005 -1.6903 3.3177 41 1 8.7020 -1.6551 3.7355 42 1 8.8495 0.1162 3.8341 43 1 7.5194 -0.7142 4.6760 44 1 5.6250 0.6974 2.9624 45 1 4.6820 3.8902 2.7532 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135942977.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:58 Heat of formation + Delta-G solvation = -44.446461 kcal Electronic energy + Delta-G solvation = -30120.783395 eV Core-core repulsion = 26140.628458 eV Total energy + Delta-G solvation = -3980.154937 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.50952 -38.85192 -38.24209 -36.58840 -35.95627 -33.98099 -32.12213 -31.51231 -30.35308 -29.66576 -28.32636 -27.39438 -26.24878 -24.16144 -23.44128 -22.29771 -21.20453 -20.12763 -19.62944 -18.59811 -17.20036 -17.04791 -16.94979 -16.40112 -15.94098 -15.60706 -14.74269 -14.69929 -14.40958 -14.17075 -13.89856 -13.61374 -13.57535 -13.13330 -12.85107 -12.70997 -12.45498 -12.31534 -12.01446 -11.81689 -11.61182 -11.57878 -11.42490 -11.34205 -10.91285 -10.86450 -10.57245 -10.43261 -10.25553 -10.11205 -9.77091 -9.55961 -9.41349 -8.77449 -8.68999 -8.57267 -8.38706 -8.21380 -6.70391 -5.55174 -2.78469 1.38769 1.69603 3.16025 3.33478 3.59812 3.64919 3.71120 3.88307 4.14507 4.46645 4.82455 4.85679 5.08831 5.11399 5.16656 5.19284 5.37415 5.43962 5.50304 5.55674 5.62932 5.75098 5.82369 5.96383 6.00160 6.07450 6.10458 6.15631 6.22108 6.25630 6.33617 6.45303 6.51539 6.64478 6.71017 6.72512 6.95142 7.14757 7.28167 7.33786 7.89987 8.27251 8.30361 8.57210 8.62146 8.98441 9.75578 10.25524 10.61149 11.67471 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.010108 B = 0.007914 C = 0.004967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2769.320810 B = 3536.993194 C = 5635.398925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.306 6.306 3 C 0.205 3.795 4 C -0.297 4.297 5 C 0.171 3.829 6 N -0.525 5.525 7 C 0.431 3.569 8 O -0.413 6.413 9 C -0.229 4.229 10 C 0.602 3.398 11 O -0.563 6.563 12 N -0.680 5.680 13 C 0.150 3.850 14 H 0.082 0.918 15 C -0.161 4.161 16 C -0.133 4.133 17 C 0.170 3.830 18 H 0.046 0.954 19 C -0.163 4.163 20 N -0.713 5.713 21 C -0.230 4.230 22 H 0.060 0.940 23 C 0.031 3.969 24 N -0.921 5.921 25 Si 0.913 3.087 26 H -0.292 1.292 27 H -0.297 1.297 28 H -0.306 1.306 29 H 0.099 0.901 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.136 0.864 33 H 0.154 0.846 34 H 0.378 0.622 35 H 0.405 0.595 36 H 0.058 0.942 37 H 0.052 0.948 38 H 0.057 0.943 39 H 0.071 0.929 40 H 0.062 0.938 41 H 0.033 0.967 42 H 0.052 0.948 43 H 0.043 0.957 44 H 0.376 0.624 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.165 -7.247 -3.445 12.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.217 6.217 3 C 0.151 3.849 4 C -0.319 4.319 5 C 0.013 3.987 6 N -0.248 5.248 7 C 0.252 3.748 8 O -0.217 6.217 9 C -0.236 4.236 10 C 0.387 3.613 11 O -0.443 6.443 12 N -0.331 5.331 13 C 0.045 3.955 14 H 0.100 0.900 15 C -0.219 4.219 16 C -0.172 4.172 17 C 0.060 3.940 18 H 0.064 0.936 19 C -0.223 4.223 20 N -0.356 5.356 21 C -0.360 4.360 22 H 0.078 0.922 23 C -0.165 4.165 24 N -0.570 5.570 25 Si 0.747 3.253 26 H -0.219 1.219 27 H -0.223 1.223 28 H -0.235 1.235 29 H 0.118 0.882 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.153 0.847 33 H 0.171 0.829 34 H 0.236 0.764 35 H 0.243 0.757 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.090 0.910 40 H 0.081 0.919 41 H 0.052 0.948 42 H 0.071 0.929 43 H 0.062 0.938 44 H 0.210 0.790 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -8.307 -6.951 -3.622 11.421 hybrid contribution -0.607 0.643 -0.065 0.887 sum -8.913 -6.308 -3.688 11.526 Atomic orbital electron populations 1.23091 0.78106 1.03952 1.01558 1.86039 1.21575 1.26529 1.87581 1.19029 0.90504 0.84552 0.90797 1.21861 1.00853 0.92937 1.16221 1.22202 0.89333 0.96564 0.90566 1.67326 1.06659 1.32890 1.17917 1.18814 0.85775 0.84639 0.85613 1.85475 1.11830 1.94491 1.29937 1.20243 0.90962 0.96082 1.16359 1.17299 0.78402 0.81734 0.83841 1.90708 1.57821 1.63980 1.31766 1.45880 1.51106 1.27453 1.08646 1.20809 0.92017 0.83811 0.98847 0.89982 1.22198 1.00185 0.97608 1.01958 1.22203 0.98869 0.99665 0.96437 1.20243 0.92013 0.86246 0.95452 0.93615 1.22433 1.00231 0.99367 1.00286 1.42393 1.15564 1.02086 1.75568 1.18940 0.97525 0.85652 1.33915 0.92245 1.24232 0.95819 0.96704 0.99739 1.69521 1.10340 1.25900 1.51192 0.86267 0.76733 0.84278 0.77994 1.21893 1.22349 1.23529 0.88227 0.92323 0.92488 0.84670 0.82884 0.76449 0.75706 0.92268 0.92916 0.92415 0.91009 0.91931 0.94840 0.92931 0.93785 0.78961 0.93845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.84 101.05 0.99 1.27 16 2 O -0.31 -4.82 10.03 -18.20 -0.18 -5.00 16 3 C 0.21 3.57 6.74 -38.32 -0.26 3.32 16 4 C -0.30 -4.39 9.09 -39.34 -0.36 -4.75 16 5 C 0.17 2.75 11.15 -17.57 -0.20 2.55 16 6 N -0.53 -10.56 10.37 -13.06 -0.14 -10.69 16 7 C 0.43 9.11 6.74 -16.62 -0.11 9.00 16 8 O -0.41 -9.19 7.21 -17.95 -0.13 -9.32 16 9 C -0.23 -4.64 5.66 -104.57 -0.59 -5.23 16 10 C 0.60 12.67 6.38 -12.61 -0.08 12.59 16 11 O -0.56 -13.08 16.77 5.25 0.09 -12.99 16 12 N -0.68 -13.04 3.80 -54.94 -0.21 -13.25 16 13 C 0.15 2.53 2.57 -67.93 -0.17 2.36 16 14 H 0.08 1.55 7.58 -51.93 -0.39 1.16 16 15 C -0.16 -2.31 9.48 37.16 0.35 -1.96 16 16 C -0.13 -2.08 4.43 -26.73 -0.12 -2.19 16 17 C 0.17 3.23 2.89 -67.93 -0.20 3.03 16 18 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 19 C -0.16 -2.87 9.49 37.16 0.35 -2.51 16 20 N -0.71 -16.14 3.84 -53.42 -0.21 -16.34 16 21 C -0.23 -5.92 9.38 -15.06 -0.14 -6.06 16 22 H 0.06 1.58 7.83 -52.49 -0.41 1.17 16 23 C 0.03 0.83 3.10 -17.43 -0.05 0.77 16 24 N -0.92 -24.95 11.68 55.49 0.65 -24.30 16 25 Si 0.91 22.98 27.88 -169.99 -4.74 18.24 16 26 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 27 H -0.30 -7.84 7.11 56.52 0.40 -7.44 16 28 H -0.31 -7.89 7.11 56.52 0.40 -7.49 16 29 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.52 7.71 -51.93 -0.40 0.12 16 31 H 0.06 0.49 7.71 -51.93 -0.40 0.09 16 32 H 0.14 1.48 6.45 -52.49 -0.34 1.14 16 33 H 0.15 1.88 8.06 -52.49 -0.42 1.46 16 34 H 0.38 7.11 9.06 45.56 0.41 7.53 16 35 H 0.41 8.17 6.49 -40.82 -0.26 7.91 16 36 H 0.06 0.72 8.14 -51.92 -0.42 0.29 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.38 8.93 5.70 -40.82 -0.23 8.70 16 45 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 366.11 15.07 5.52 5.52 Total: -1.00 -31.84 366.11 -5.74 -37.58 By element: Atomic # 1 Polarization: 24.18 SS G_CDS: -5.81 Total: 18.37 kcal Atomic # 6 Polarization: 12.76 SS G_CDS: -0.58 Total: 12.18 kcal Atomic # 7 Polarization: -64.68 SS G_CDS: 0.10 Total: -64.58 kcal Atomic # 8 Polarization: -27.08 SS G_CDS: -0.22 Total: -27.31 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -4.74 Total: 18.24 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.84 -5.74 -37.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135942977.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.870 kcal (2) G-P(sol) polarization free energy of solvation -31.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds