Wall clock time and date at job start Tue Mar 31 2020 14:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35507 * 117.00139 * 2 1 4 4 C 1.39214 * 120.89632 * 5.48808 * 3 2 1 5 5 C 1.37903 * 119.38472 * 180.02562 * 4 3 2 6 6 N 1.32081 * 121.29716 * 0.02562 * 5 4 3 7 7 C 1.32185 * 121.97412 * 359.68245 * 6 5 4 8 8 O 1.35420 * 119.77653 * 180.29088 * 7 6 5 9 9 C 1.40297 * 120.44257 * 0.58276 * 7 6 5 10 10 C 1.47236 * 120.64810 * 179.72865 * 9 7 6 11 11 O 1.21619 * 119.99975 * 263.06768 * 10 9 7 12 12 N 1.34771 * 119.99756 * 83.07536 * 10 9 7 13 13 C 1.46497 * 119.99983 * 184.67175 * 12 10 9 14 14 H 1.09000 * 109.47277 * 318.47175 * 13 12 10 15 15 C 1.53001 * 109.47279 * 78.47633 * 13 12 10 16 16 C 1.53002 * 109.47313 * 198.47716 * 13 12 10 17 17 C 1.52991 * 109.47384 * 67.47701 * 16 13 12 18 18 H 1.08999 * 109.47289 * 54.35599 * 17 16 13 19 19 C 1.53005 * 109.47358 * 174.35565 * 17 16 13 20 20 N 1.46507 * 109.47210 * 294.35607 * 17 16 13 21 21 C 1.36931 * 120.00111 * 151.52564 * 20 17 16 22 22 H 1.08004 * 120.00110 * 354.59261 * 21 20 17 23 23 C 1.38810 * 119.99853 * 174.59373 * 21 20 17 24 24 N 1.31622 * 119.99866 * 182.68699 * 23 21 20 25 25 Si 1.86797 * 120.00056 * 2.96386 * 23 21 20 26 26 H 1.48499 * 109.46841 * 269.72212 * 25 23 21 27 27 H 1.48497 * 109.47198 * 29.72333 * 25 23 21 28 28 H 1.48507 * 109.47106 * 149.72712 * 25 23 21 29 29 H 1.08998 * 109.47574 * 303.77168 * 1 2 3 30 30 H 1.09005 * 109.46811 * 63.76993 * 1 2 3 31 31 H 1.09001 * 109.47533 * 183.76312 * 1 2 3 32 32 H 1.07997 * 120.30875 * 0.04638 * 4 3 2 33 33 H 1.08009 * 119.34988 * 180.02562 * 5 4 3 34 34 H 0.96707 * 113.99969 * 270.28729 * 8 7 6 35 35 H 0.97007 * 120.00485 * 4.66983 * 12 10 9 36 36 H 1.08992 * 109.47222 * 59.99899 * 15 13 12 37 37 H 1.09003 * 109.47216 * 180.02562 * 15 13 12 38 38 H 1.09005 * 109.46894 * 299.99858 * 15 13 12 39 39 H 1.09001 * 109.47121 * 307.47246 * 16 13 12 40 40 H 1.09005 * 109.47480 * 187.47934 * 16 13 12 41 41 H 1.09000 * 109.47071 * 179.97438 * 19 17 16 42 42 H 1.08999 * 109.46602 * 300.00075 * 19 17 16 43 43 H 1.08999 * 109.46893 * 59.99791 * 19 17 16 44 44 H 0.97000 * 119.99903 * 331.52003 * 20 17 16 45 45 H 0.97004 * 119.99949 * 175.18338 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0441 1.2074 0.0000 4 6 1.3092 2.3842 0.1142 5 6 1.9673 3.5960 0.1102 6 7 3.2818 3.6626 -0.0004 7 6 4.0311 2.5788 -0.1062 8 8 5.3759 2.6986 -0.2114 9 6 3.4421 1.3055 -0.1162 10 6 4.2719 0.0956 -0.2398 11 8 4.4248 -0.4286 -1.3265 12 7 4.8620 -0.4311 0.8515 13 6 5.7693 -1.5731 0.7143 14 1 5.3551 -2.2821 -0.0025 15 6 7.1323 -1.0850 0.2196 16 6 5.9351 -2.2586 2.0720 17 6 4.6118 -2.9089 2.4801 18 1 4.2737 -3.5743 1.6857 19 6 4.8135 -3.7121 3.7667 20 7 3.6057 -1.8683 2.7067 21 6 2.2793 -2.1433 2.5071 22 1 1.9811 -3.0981 2.0995 23 6 1.3178 -1.1951 2.8284 24 7 0.0404 -1.4787 2.6863 25 14 1.8371 0.4862 3.4552 26 1 1.9345 0.4537 4.9367 27 1 3.1590 0.8424 2.8799 28 1 0.8306 1.4991 3.0474 29 1 -0.3634 0.5712 0.8542 30 1 -0.3633 0.4542 -0.9219 31 1 -0.3634 -1.0254 0.0674 32 1 0.2337 2.3484 0.2055 33 1 1.3966 4.5087 0.1993 34 1 5.6941 2.7738 -1.1215 35 1 4.6860 -0.0540 1.7277 36 1 7.5465 -0.3760 0.9363 37 1 7.8073 -1.9347 0.1171 38 1 7.0142 -0.5966 -0.7478 39 1 6.2225 -1.5193 2.8197 40 1 6.7089 -3.0231 2.0010 41 1 3.8705 -4.1750 4.0576 42 1 5.5620 -4.4863 3.5980 43 1 5.1516 -3.0468 4.5611 44 1 3.8793 -0.9845 2.9983 45 1 -0.6327 -0.8431 2.9760 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135942978.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:00 Heat of formation + Delta-G solvation = -51.757982 kcal Electronic energy + Delta-G solvation = -30241.883459 eV Core-core repulsion = 26261.411471 eV Total energy + Delta-G solvation = -3980.471988 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.79421 -39.01367 -38.42243 -36.87408 -36.57593 -34.26248 -32.33422 -31.80789 -30.65491 -30.04894 -29.05692 -26.96161 -26.39588 -24.46924 -23.33253 -22.57500 -21.42777 -20.46800 -19.78275 -18.95541 -17.56540 -17.54345 -17.16951 -16.76540 -16.17147 -15.51580 -15.04170 -14.84032 -14.56172 -14.34871 -14.23363 -13.93342 -13.56728 -13.30993 -13.01651 -12.87423 -12.65201 -12.45437 -12.17179 -12.05801 -11.98407 -11.75067 -11.71611 -11.19006 -11.08645 -11.01092 -10.93721 -10.74465 -10.50785 -10.29808 -10.01194 -9.91144 -9.60587 -9.18809 -8.99442 -8.89133 -8.56374 -8.46375 -7.24940 -5.78335 -3.11411 0.92596 1.41604 3.06225 3.18444 3.23301 3.29331 3.36774 3.57953 3.72681 4.00771 4.52002 4.72349 4.95278 5.05257 5.09090 5.16660 5.27928 5.34954 5.51468 5.55113 5.59108 5.59890 5.73614 5.77028 5.79304 5.91471 5.93049 6.06721 6.10271 6.15951 6.31168 6.34885 6.36038 6.41136 6.41727 6.52765 6.78753 6.97254 7.05213 7.46201 7.57059 7.94551 7.96831 8.03296 8.38264 8.71306 9.16475 9.90302 10.08986 11.39026 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.010595 B = 0.008247 C = 0.005626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2642.022360 B = 3394.437133 C = 4975.772428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.259 6.259 3 C 0.230 3.770 4 C -0.281 4.281 5 C 0.165 3.835 6 N -0.533 5.533 7 C 0.370 3.630 8 O -0.473 6.473 9 C -0.233 4.233 10 C 0.596 3.404 11 O -0.547 6.547 12 N -0.689 5.689 13 C 0.150 3.850 14 H 0.085 0.915 15 C -0.161 4.161 16 C -0.137 4.137 17 C 0.175 3.825 18 H 0.059 0.941 19 C -0.164 4.164 20 N -0.742 5.742 21 C -0.215 4.215 22 H 0.090 0.910 23 C 0.021 3.979 24 N -0.933 5.933 25 Si 0.861 3.139 26 H -0.291 1.291 27 H -0.285 1.285 28 H -0.290 1.290 29 H 0.057 0.943 30 H 0.041 0.959 31 H 0.121 0.879 32 H 0.147 0.853 33 H 0.164 0.836 34 H 0.403 0.597 35 H 0.399 0.601 36 H 0.054 0.946 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.079 0.921 41 H 0.057 0.943 42 H 0.039 0.961 43 H 0.043 0.957 44 H 0.353 0.647 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.994 5.480 -4.832 10.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.166 6.166 3 C 0.172 3.828 4 C -0.302 4.302 5 C 0.010 3.990 6 N -0.256 5.256 7 C 0.191 3.809 8 O -0.281 6.281 9 C -0.241 4.241 10 C 0.381 3.619 11 O -0.425 6.425 12 N -0.340 5.340 13 C 0.045 3.955 14 H 0.103 0.897 15 C -0.220 4.220 16 C -0.176 4.176 17 C 0.065 3.935 18 H 0.078 0.922 19 C -0.224 4.224 20 N -0.386 5.386 21 C -0.345 4.345 22 H 0.108 0.892 23 C -0.174 4.174 24 N -0.584 5.584 25 Si 0.693 3.307 26 H -0.218 1.218 27 H -0.212 1.212 28 H -0.217 1.217 29 H 0.075 0.925 30 H 0.060 0.940 31 H 0.139 0.861 32 H 0.165 0.835 33 H 0.181 0.819 34 H 0.261 0.739 35 H 0.237 0.763 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.097 0.903 41 H 0.077 0.923 42 H 0.058 0.942 43 H 0.062 0.938 44 H 0.186 0.814 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.408 5.485 -5.110 10.539 hybrid contribution -0.543 0.975 0.749 1.344 sum 6.865 6.460 -4.361 10.387 Atomic orbital electron populations 1.23231 0.76478 1.06229 0.99325 1.86322 1.22713 1.23339 1.84201 1.19258 0.90545 0.86305 0.86649 1.22249 1.02439 0.92946 1.12585 1.22286 0.88656 0.97138 0.90935 1.67208 1.07182 1.32149 1.19071 1.18741 0.84084 0.85850 0.92260 1.84674 1.15272 1.95016 1.33101 1.20302 0.92264 0.95571 1.15948 1.17264 0.77984 0.82295 0.84394 1.90731 1.62661 1.61857 1.27247 1.46037 1.45812 1.32632 1.09548 1.20873 0.88887 0.88013 0.97728 0.89719 1.22190 0.96745 1.01379 1.01659 1.22270 0.99341 1.00199 0.95780 1.20276 0.87382 0.90582 0.95218 0.92248 1.22390 1.00865 0.99435 0.99677 1.42876 1.03894 1.09473 1.82336 1.19057 0.80526 1.01038 1.33881 0.89240 1.24361 0.95028 0.96341 1.01640 1.69695 0.98462 1.36067 1.54134 0.87025 0.77272 0.87233 0.79130 1.21822 1.21242 1.21665 0.92451 0.94045 0.86115 0.83523 0.81911 0.73873 0.76335 0.92733 0.91986 0.92249 0.91895 0.90257 0.92348 0.94185 0.93799 0.81378 0.93641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.76 8.76 101.05 0.88 1.65 16 2 O -0.26 -5.53 8.84 -18.21 -0.16 -5.69 16 3 C 0.23 4.52 5.23 -38.32 -0.20 4.32 16 4 C -0.28 -4.65 9.13 -39.34 -0.36 -5.01 16 5 C 0.17 2.47 11.15 -17.57 -0.20 2.28 16 6 N -0.53 -8.95 10.37 -13.06 -0.14 -9.09 16 7 C 0.37 6.50 7.77 -16.63 -0.13 6.37 16 8 O -0.47 -7.12 13.01 -17.95 -0.23 -7.36 16 9 C -0.23 -4.57 5.67 -104.57 -0.59 -5.16 16 10 C 0.60 12.15 6.25 -12.61 -0.08 12.07 16 11 O -0.55 -12.21 16.59 5.26 0.09 -12.13 16 12 N -0.69 -12.92 4.07 -54.94 -0.22 -13.15 16 13 C 0.15 2.42 2.52 -67.93 -0.17 2.25 16 14 H 0.08 1.54 7.71 -51.93 -0.40 1.14 16 15 C -0.16 -2.17 9.37 37.16 0.35 -1.83 16 16 C -0.14 -2.01 4.40 -26.73 -0.12 -2.13 16 17 C 0.17 3.14 2.89 -67.93 -0.20 2.95 16 18 H 0.06 1.15 8.04 -51.93 -0.42 0.73 16 19 C -0.16 -2.69 9.52 37.16 0.35 -2.34 16 20 N -0.74 -16.18 3.60 -53.42 -0.19 -16.37 16 21 C -0.22 -5.56 10.41 -15.06 -0.16 -5.71 16 22 H 0.09 2.55 8.06 -52.48 -0.42 2.13 16 23 C 0.02 0.54 4.51 -17.43 -0.08 0.46 16 24 N -0.93 -25.62 12.90 55.49 0.72 -24.90 16 25 Si 0.86 21.01 25.78 -169.99 -4.38 16.63 16 26 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 27 H -0.29 -6.68 5.59 56.52 0.32 -6.37 16 28 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 29 H 0.06 1.07 7.24 -51.93 -0.38 0.69 16 30 H 0.04 0.60 8.11 -51.93 -0.42 0.18 16 31 H 0.12 2.38 7.96 -51.93 -0.41 1.96 16 32 H 0.15 2.10 6.42 -52.49 -0.34 1.76 16 33 H 0.16 1.76 8.06 -52.48 -0.42 1.34 16 34 H 0.40 4.16 9.06 45.56 0.41 4.57 16 35 H 0.40 7.83 5.42 -40.82 -0.22 7.61 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.87 7.85 -51.93 -0.41 0.46 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.35 7.73 3.91 -40.82 -0.16 7.57 16 45 H 0.25 6.74 8.32 -40.82 -0.34 6.40 16 LS Contribution 365.68 15.07 5.51 5.51 Total: -1.00 -31.75 365.68 -5.47 -37.22 By element: Atomic # 1 Polarization: 24.92 SS G_CDS: -5.77 Total: 19.15 kcal Atomic # 6 Polarization: 10.86 SS G_CDS: -0.69 Total: 10.17 kcal Atomic # 7 Polarization: -63.67 SS G_CDS: 0.16 Total: -63.50 kcal Atomic # 8 Polarization: -24.87 SS G_CDS: -0.31 Total: -25.17 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.38 Total: 16.63 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.75 -5.47 -37.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135942978.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.538 kcal (2) G-P(sol) polarization free energy of solvation -31.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds