Wall clock time and date at job start Tue Mar 31 2020 14:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35507 * 117.00139 * 2 1 4 4 C 1.39214 * 120.89632 * 5.48808 * 3 2 1 5 5 C 1.37903 * 119.38472 * 180.02562 * 4 3 2 6 6 N 1.32081 * 121.29716 * 0.02562 * 5 4 3 7 7 C 1.32185 * 121.97412 * 359.68245 * 6 5 4 8 8 O 1.35420 * 119.77653 * 180.29088 * 7 6 5 9 9 C 1.40297 * 120.44257 * 0.58276 * 7 6 5 10 10 C 1.47236 * 120.64810 * 179.72865 * 9 7 6 11 11 O 1.21619 * 119.99975 * 263.06768 * 10 9 7 12 12 N 1.34771 * 119.99756 * 83.07536 * 10 9 7 13 13 C 1.46497 * 119.99983 * 184.67175 * 12 10 9 14 14 H 1.09000 * 109.47277 * 318.47175 * 13 12 10 15 15 C 1.53001 * 109.47279 * 78.47633 * 13 12 10 16 16 C 1.53002 * 109.47313 * 198.47716 * 13 12 10 17 17 C 1.52991 * 109.47384 * 67.47701 * 16 13 12 18 18 H 1.08999 * 109.47289 * 54.35599 * 17 16 13 19 19 C 1.53005 * 109.47358 * 174.35565 * 17 16 13 20 20 N 1.46507 * 109.47210 * 294.35607 * 17 16 13 21 21 C 1.36931 * 120.00111 * 151.52564 * 20 17 16 22 22 H 1.08004 * 120.00110 * 354.59261 * 21 20 17 23 23 C 1.38810 * 119.99853 * 174.59373 * 21 20 17 24 24 N 1.31622 * 119.99866 * 182.68699 * 23 21 20 25 25 Si 1.86797 * 120.00056 * 2.96386 * 23 21 20 26 26 H 1.48499 * 109.46841 * 269.72212 * 25 23 21 27 27 H 1.48497 * 109.47198 * 29.72333 * 25 23 21 28 28 H 1.48507 * 109.47106 * 149.72712 * 25 23 21 29 29 H 1.08998 * 109.47574 * 303.77168 * 1 2 3 30 30 H 1.09005 * 109.46811 * 63.76993 * 1 2 3 31 31 H 1.09001 * 109.47533 * 183.76312 * 1 2 3 32 32 H 1.07997 * 120.30875 * 0.04638 * 4 3 2 33 33 H 1.08009 * 119.34988 * 180.02562 * 5 4 3 34 34 H 0.96707 * 113.99969 * 270.28729 * 8 7 6 35 35 H 0.97007 * 120.00485 * 4.66983 * 12 10 9 36 36 H 1.08992 * 109.47222 * 59.99899 * 15 13 12 37 37 H 1.09003 * 109.47216 * 180.02562 * 15 13 12 38 38 H 1.09005 * 109.46894 * 299.99858 * 15 13 12 39 39 H 1.09001 * 109.47121 * 307.47246 * 16 13 12 40 40 H 1.09005 * 109.47480 * 187.47934 * 16 13 12 41 41 H 1.09000 * 109.47071 * 179.97438 * 19 17 16 42 42 H 1.08999 * 109.46602 * 300.00075 * 19 17 16 43 43 H 1.08999 * 109.46893 * 59.99791 * 19 17 16 44 44 H 0.97000 * 119.99903 * 331.52003 * 20 17 16 45 45 H 0.97004 * 119.99949 * 175.18338 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0441 1.2074 0.0000 4 6 1.3092 2.3842 0.1142 5 6 1.9673 3.5960 0.1102 6 7 3.2818 3.6626 -0.0004 7 6 4.0311 2.5788 -0.1062 8 8 5.3759 2.6986 -0.2114 9 6 3.4421 1.3055 -0.1162 10 6 4.2719 0.0956 -0.2398 11 8 4.4248 -0.4286 -1.3265 12 7 4.8620 -0.4311 0.8515 13 6 5.7693 -1.5731 0.7143 14 1 5.3551 -2.2821 -0.0025 15 6 7.1323 -1.0850 0.2196 16 6 5.9351 -2.2586 2.0720 17 6 4.6118 -2.9089 2.4801 18 1 4.2737 -3.5743 1.6857 19 6 4.8135 -3.7121 3.7667 20 7 3.6057 -1.8683 2.7067 21 6 2.2793 -2.1433 2.5071 22 1 1.9811 -3.0981 2.0995 23 6 1.3178 -1.1951 2.8284 24 7 0.0404 -1.4787 2.6863 25 14 1.8371 0.4862 3.4552 26 1 1.9345 0.4537 4.9367 27 1 3.1590 0.8424 2.8799 28 1 0.8306 1.4991 3.0474 29 1 -0.3634 0.5712 0.8542 30 1 -0.3633 0.4542 -0.9219 31 1 -0.3634 -1.0254 0.0674 32 1 0.2337 2.3484 0.2055 33 1 1.3966 4.5087 0.1993 34 1 5.6941 2.7738 -1.1215 35 1 4.6860 -0.0540 1.7277 36 1 7.5465 -0.3760 0.9363 37 1 7.8073 -1.9347 0.1171 38 1 7.0142 -0.5966 -0.7478 39 1 6.2225 -1.5193 2.8197 40 1 6.7089 -3.0231 2.0010 41 1 3.8705 -4.1750 4.0576 42 1 5.5620 -4.4863 3.5980 43 1 5.1516 -3.0468 4.5611 44 1 3.8793 -0.9845 2.9983 45 1 -0.6327 -0.8431 2.9760 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135942978.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:00 Heat of formation + Delta-G solvation = -78.130137 kcal Electronic energy + Delta-G solvation = -30243.027041 eV Core-core repulsion = 26261.411471 eV Total energy + Delta-G solvation = -3981.615571 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.14532 -40.46912 -39.79350 -38.39200 -37.82895 -35.86267 -34.07604 -33.29770 -32.07461 -31.45627 -30.59764 -28.38935 -27.62873 -25.79382 -25.21251 -23.89721 -22.78248 -21.95633 -21.27375 -20.24293 -19.49023 -18.91438 -18.53295 -18.10769 -17.63073 -16.92161 -16.61670 -16.30621 -16.03964 -15.88506 -15.61719 -15.40332 -15.05460 -14.90286 -14.37718 -14.30468 -14.17484 -14.03845 -13.58387 -13.43527 -13.28108 -12.95506 -12.90573 -12.82564 -12.64439 -12.47616 -12.44517 -12.32202 -12.09213 -11.79984 -11.63328 -11.46743 -11.33004 -10.89573 -10.57345 -10.18288 -9.99934 -9.95072 -9.11346 -7.84938 -5.14453 -0.34833 0.06827 1.26227 1.29004 1.34746 1.54466 1.96357 2.22814 2.40817 2.50531 2.71785 3.44314 3.47673 3.64238 3.75288 3.79118 3.80983 3.91274 4.09567 4.20629 4.29619 4.34229 4.35357 4.46760 4.53814 4.64475 4.80033 4.81725 4.83771 4.86940 4.92705 5.02529 5.08616 5.12367 5.19670 5.35021 5.37051 5.58666 5.65401 5.92567 6.16771 6.35029 6.38787 6.50623 6.70622 7.19604 7.22011 7.96282 8.14281 9.35137 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.010595 B = 0.008247 C = 0.005626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2642.022360 B = 3394.437133 C = 4975.772428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 O -0.293 6.293 3 C 0.206 3.794 4 C -0.285 4.285 5 C 0.176 3.824 6 N -0.537 5.537 7 C 0.375 3.625 8 O -0.475 6.475 9 C -0.262 4.262 10 C 0.593 3.407 11 O -0.579 6.579 12 N -0.687 5.687 13 C 0.143 3.857 14 H 0.058 0.942 15 C -0.150 4.150 16 C -0.124 4.124 17 C 0.166 3.834 18 H 0.037 0.963 19 C -0.154 4.154 20 N -0.743 5.743 21 C -0.207 4.207 22 H 0.051 0.949 23 C -0.012 4.012 24 N -0.960 5.960 25 Si 0.907 3.093 26 H -0.302 1.302 27 H -0.273 1.273 28 H -0.287 1.287 29 H 0.051 0.949 30 H 0.078 0.922 31 H 0.096 0.904 32 H 0.167 0.833 33 H 0.211 0.789 34 H 0.422 0.578 35 H 0.395 0.605 36 H 0.066 0.934 37 H 0.089 0.911 38 H 0.042 0.958 39 H 0.076 0.924 40 H 0.118 0.882 41 H 0.029 0.971 42 H 0.074 0.926 43 H 0.051 0.949 44 H 0.354 0.646 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.881 7.323 -4.317 12.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 O -0.201 6.201 3 C 0.150 3.850 4 C -0.306 4.306 5 C 0.021 3.979 6 N -0.261 5.261 7 C 0.196 3.804 8 O -0.286 6.286 9 C -0.270 4.270 10 C 0.378 3.622 11 O -0.460 6.460 12 N -0.337 5.337 13 C 0.039 3.961 14 H 0.076 0.924 15 C -0.208 4.208 16 C -0.162 4.162 17 C 0.058 3.942 18 H 0.056 0.944 19 C -0.214 4.214 20 N -0.387 5.387 21 C -0.338 4.338 22 H 0.069 0.931 23 C -0.205 4.205 24 N -0.612 5.612 25 Si 0.740 3.260 26 H -0.231 1.231 27 H -0.200 1.200 28 H -0.213 1.213 29 H 0.070 0.930 30 H 0.096 0.904 31 H 0.114 0.886 32 H 0.185 0.815 33 H 0.227 0.773 34 H 0.284 0.716 35 H 0.232 0.768 36 H 0.085 0.915 37 H 0.108 0.892 38 H 0.061 0.939 39 H 0.095 0.905 40 H 0.136 0.864 41 H 0.048 0.952 42 H 0.093 0.907 43 H 0.070 0.930 44 H 0.188 0.812 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 9.355 7.318 -4.602 12.737 hybrid contribution -1.123 0.346 0.543 1.294 sum 8.232 7.664 -4.060 11.957 Atomic orbital electron populations 1.23160 0.75670 1.05003 1.00918 1.86248 1.23840 1.25093 1.84942 1.19571 0.90903 0.86645 0.87910 1.22558 1.03463 0.92398 1.12201 1.23070 0.88265 0.98260 0.88305 1.67383 1.07990 1.31412 1.19278 1.18815 0.84860 0.85388 0.91379 1.84613 1.14134 1.94876 1.34927 1.20452 0.92486 0.96008 1.18060 1.17501 0.77851 0.82584 0.84217 1.90694 1.63938 1.63006 1.28337 1.46145 1.45794 1.32880 1.08837 1.21073 0.89755 0.87069 0.98209 0.92404 1.22085 0.95269 1.02580 1.00847 1.22207 0.98007 1.01123 0.94858 1.20501 0.88212 0.89921 0.95524 0.94444 1.22246 1.00497 1.00028 0.98587 1.42842 1.03068 1.10442 1.82388 1.18854 0.82607 0.99401 1.32938 0.93097 1.24696 0.94936 0.98525 1.02336 1.69810 0.99257 1.36957 1.55175 0.86258 0.77656 0.84534 0.77591 1.23051 1.19985 1.21281 0.93026 0.90354 0.88552 0.81532 0.77254 0.71570 0.76829 0.91463 0.89180 0.93911 0.90549 0.86419 0.95168 0.90740 0.93009 0.81205 0.93830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.73 8.76 113.37 0.99 2.72 16 2 O -0.29 -12.78 8.84 -88.09 -0.78 -13.55 16 3 C 0.21 8.01 5.23 23.09 0.12 8.13 16 4 C -0.29 -8.85 9.13 22.42 0.20 -8.65 16 5 C 0.18 4.68 11.15 84.58 0.94 5.63 16 6 N -0.54 -16.58 10.37 -308.27 -3.20 -19.78 16 7 C 0.38 12.58 7.77 85.14 0.66 13.24 16 8 O -0.48 -13.46 13.01 -87.15 -1.13 -14.60 16 9 C -0.26 -10.16 5.67 -19.83 -0.11 -10.28 16 10 C 0.59 24.39 6.25 86.61 0.54 24.93 16 11 O -0.58 -26.56 16.59 -4.09 -0.07 -26.63 16 12 N -0.69 -25.51 4.07 -446.00 -1.82 -27.33 16 13 C 0.14 4.47 2.52 44.99 0.11 4.58 16 14 H 0.06 2.13 7.71 -2.39 -0.02 2.11 16 15 C -0.15 -3.68 9.37 71.98 0.67 -3.01 16 16 C -0.12 -3.31 4.40 30.59 0.13 -3.18 16 17 C 0.17 5.88 2.89 44.99 0.13 6.01 16 18 H 0.04 1.48 8.04 -2.39 -0.02 1.47 16 19 C -0.15 -4.82 9.52 71.98 0.69 -4.14 16 20 N -0.74 -32.59 3.60 -322.94 -1.16 -33.75 16 21 C -0.21 -11.06 10.41 84.03 0.88 -10.18 16 22 H 0.05 3.08 8.06 -2.91 -0.02 3.06 16 23 C -0.01 -0.66 4.51 84.86 0.38 -0.28 16 24 N -0.96 -54.25 12.90 21.65 0.28 -53.97 16 25 Si 0.91 43.44 25.78 68.60 1.77 45.21 16 26 H -0.30 -14.95 7.11 99.48 0.71 -14.24 16 27 H -0.27 -12.39 5.59 99.48 0.56 -11.84 16 28 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 29 H 0.05 1.93 7.24 -2.39 -0.02 1.91 16 30 H 0.08 2.24 8.11 -2.38 -0.02 2.22 16 31 H 0.10 4.00 7.96 -2.39 -0.02 3.98 16 32 H 0.17 4.36 6.42 -2.91 -0.02 4.34 16 33 H 0.21 3.48 8.06 -2.91 -0.02 3.46 16 34 H 0.42 8.02 9.06 -74.05 -0.67 7.35 16 35 H 0.39 15.18 5.42 -92.70 -0.50 14.67 16 36 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.04 1.20 7.85 -2.38 -0.02 1.18 16 39 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.12 2.31 8.14 -2.38 -0.02 2.29 16 41 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.35 15.31 3.91 -92.71 -0.36 14.95 16 45 H 0.25 13.73 8.32 -92.71 -0.77 12.95 16 Total: -1.00 -71.88 365.68 -0.41 -72.29 By element: Atomic # 1 Polarization: 47.22 SS G_CDS: -0.65 Total: 46.57 kcal Atomic # 6 Polarization: 19.19 SS G_CDS: 6.35 Total: 25.54 kcal Atomic # 7 Polarization: -128.92 SS G_CDS: -5.90 Total: -134.82 kcal Atomic # 8 Polarization: -52.80 SS G_CDS: -1.98 Total: -54.78 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 1.77 Total: 45.21 kcal Total: -71.88 -0.41 -72.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135942978.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.837 kcal (2) G-P(sol) polarization free energy of solvation -71.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds