Wall clock time and date at job start Tue Mar 31 2020 14:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47632 * 2 1 4 4 C 1.53007 * 109.47232 * 240.00205 * 2 1 3 5 5 C 1.52995 * 109.47324 * 175.00056 * 4 2 1 6 6 H 1.09001 * 109.47128 * 54.99964 * 5 4 2 7 7 C 1.53002 * 109.47027 * 175.00050 * 5 4 2 8 8 N 1.46492 * 109.47251 * 294.99972 * 5 4 2 9 9 C 1.34776 * 120.00063 * 155.00049 * 8 5 4 10 10 O 1.21277 * 120.00215 * 359.97438 * 9 8 5 11 11 C 1.50701 * 119.99977 * 180.02562 * 9 8 5 12 12 N 1.46504 * 109.46923 * 179.97438 * 11 9 8 13 13 C 1.34777 * 119.99854 * 179.97438 * 12 11 9 14 14 O 1.21703 * 120.00024 * 0.02562 * 13 12 11 15 15 C 1.46655 * 120.00110 * 180.27595 * 13 12 11 16 16 C 1.36551 * 125.99020 * 179.44344 * 15 13 12 17 17 C 1.40363 * 106.70907 * 179.85347 * 16 15 13 18 18 C 1.35135 * 107.11375 * 0.41095 * 17 16 15 19 19 O 1.33928 * 108.76621 * 359.74551 * 18 17 16 20 20 N 1.46507 * 109.47197 * 120.00464 * 2 1 3 21 21 C 1.36936 * 119.99548 * 274.99778 * 20 2 1 22 22 H 1.08003 * 120.00453 * 0.02562 * 21 20 2 23 23 C 1.38810 * 119.99784 * 180.02562 * 21 20 2 24 24 N 1.31623 * 119.99968 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00279 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.47123 * 89.99825 * 25 23 21 27 27 H 1.48491 * 109.47334 * 209.99701 * 25 23 21 28 28 H 1.48504 * 109.46777 * 330.00146 * 25 23 21 29 29 H 1.09005 * 109.46877 * 299.99943 * 1 2 3 30 30 H 1.08996 * 109.46957 * 59.99339 * 1 2 3 31 31 H 1.08995 * 109.47346 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46814 * 54.99953 * 4 2 1 33 33 H 1.09000 * 109.46657 * 295.00184 * 4 2 1 34 34 H 1.09008 * 109.46836 * 299.99768 * 7 5 4 35 35 H 1.08995 * 109.46815 * 59.99849 * 7 5 4 36 36 H 1.08997 * 109.46976 * 180.02562 * 7 5 4 37 37 H 0.97003 * 120.00350 * 335.00227 * 8 5 4 38 38 H 1.08998 * 109.47477 * 59.99807 * 11 9 8 39 39 H 1.08997 * 109.47150 * 299.99702 * 11 9 8 40 40 H 0.96990 * 120.00418 * 0.02562 * 12 11 9 41 41 H 1.07999 * 126.64435 * 359.97438 * 16 15 13 42 42 H 1.07992 * 126.44239 * 180.17023 * 17 16 15 43 43 H 1.07995 * 125.61624 * 179.78357 * 18 17 16 44 44 H 0.96996 * 119.99969 * 94.99665 * 20 2 1 45 45 H 0.97004 * 119.99863 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6133 -1.3138 6 1 3.9954 -0.9923 -0.3869 7 6 4.0851 -1.4383 -2.4926 8 7 3.9480 0.7893 -1.4925 9 6 5.1612 1.2134 -1.0867 10 8 5.9356 0.4340 -0.5733 11 6 5.5551 2.6564 -1.2701 12 7 6.9098 2.8624 -0.7518 13 6 7.4752 4.0844 -0.8104 14 8 6.8602 5.0169 -1.2935 15 6 8.8336 4.2894 -0.2971 16 6 9.5252 5.4668 -0.3047 17 6 10.7728 5.2058 0.2832 18 6 10.7914 3.8950 0.6112 19 8 9.6213 3.3463 0.2600 20 7 2.0183 -0.6907 1.1962 21 6 2.1491 -0.0076 2.3757 22 1 1.8919 1.0402 2.4244 23 6 2.6124 -0.6619 3.5089 24 7 2.9254 -1.9390 3.4498 25 14 2.7902 0.2697 5.1183 26 1 1.5225 0.1774 5.8864 27 1 3.8951 -0.3229 5.9138 28 1 3.0940 1.6953 4.8340 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.6054 -0.2617 -2.1370 33 1 1.7516 -1.7715 -1.2056 34 1 3.8000 -2.4820 -2.3596 35 1 3.6545 -1.0593 -3.4194 36 1 5.1714 -1.3617 -2.5383 37 1 3.3285 1.4129 -1.9028 38 1 4.8580 3.2951 -0.7277 39 1 5.5292 2.9083 -2.3302 40 1 7.4002 2.1192 -0.3671 41 1 9.1785 6.4155 -0.6870 42 1 11.5696 5.9177 0.4399 43 1 11.6141 3.3757 1.0800 44 1 2.2490 -1.6319 1.1525 45 1 3.2487 -2.3963 4.2418 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001136116355.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:04 Heat of formation + Delta-G solvation = -51.161797 kcal Electronic energy + Delta-G solvation = -27234.854908 eV Core-core repulsion = 23254.408773 eV Total energy + Delta-G solvation = -3980.446136 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.89857 -40.12856 -39.12859 -36.95870 -34.81011 -34.39182 -33.27359 -32.22763 -31.10406 -30.30721 -28.61443 -27.62770 -26.33044 -23.65849 -23.38280 -22.01126 -21.37444 -20.53569 -20.39812 -19.74532 -19.01751 -17.29635 -16.90395 -16.61475 -16.52454 -16.05403 -15.75662 -15.45960 -14.76321 -14.52161 -14.24317 -13.96048 -13.69507 -13.42400 -13.27579 -13.22414 -13.04489 -12.91439 -12.78213 -12.51240 -12.14608 -12.02086 -11.74965 -11.62806 -11.06206 -10.83352 -10.62182 -10.57933 -10.44995 -10.31891 -10.23214 -9.90782 -9.76029 -9.61521 -9.43952 -8.92129 -8.87777 -8.81019 -6.92060 -5.72893 -3.00906 0.83377 2.10242 2.41028 2.73340 2.86890 2.99091 3.45528 3.47924 3.51135 3.52465 4.44278 4.62475 4.64008 4.68714 4.80724 5.10201 5.16968 5.27494 5.37241 5.38408 5.46507 5.50370 5.61148 5.63952 5.65966 5.86357 5.90849 5.99753 6.03263 6.04771 6.11231 6.27521 6.32210 6.41939 6.54906 6.57013 6.65943 6.76028 6.89536 7.06682 7.28859 7.62141 7.72686 7.87903 8.34501 8.45536 9.56957 10.14047 10.48150 11.49773 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.010373 B = 0.003375 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2698.679985 B = 8293.429352 C = 9892.806764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.171 3.829 3 H 0.046 0.954 4 C -0.131 4.131 5 C 0.144 3.856 6 H 0.107 0.893 7 C -0.161 4.161 8 N -0.709 5.709 9 C 0.510 3.490 10 O -0.530 6.530 11 C 0.099 3.901 12 N -0.703 5.703 13 C 0.606 3.394 14 O -0.525 6.525 15 C -0.077 4.077 16 C -0.120 4.120 17 C -0.229 4.229 18 C -0.003 4.003 19 O -0.160 6.160 20 N -0.720 5.720 21 C -0.235 4.235 22 H 0.067 0.933 23 C -0.011 4.011 24 N -0.931 5.931 25 Si 0.902 3.098 26 H -0.291 1.291 27 H -0.292 1.292 28 H -0.283 1.283 29 H 0.052 0.948 30 H 0.034 0.966 31 H 0.046 0.954 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.050 0.950 36 H 0.055 0.945 37 H 0.397 0.603 38 H 0.104 0.896 39 H 0.100 0.900 40 H 0.419 0.581 41 H 0.161 0.839 42 H 0.157 0.843 43 H 0.211 0.789 44 H 0.383 0.617 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.401 9.924 -13.374 19.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.061 3.939 3 H 0.064 0.936 4 C -0.170 4.170 5 C 0.040 3.960 6 H 0.125 0.875 7 C -0.219 4.219 8 N -0.360 5.360 9 C 0.294 3.706 10 O -0.406 6.406 11 C -0.028 4.028 12 N -0.357 5.357 13 C 0.392 3.608 14 O -0.403 6.403 15 C -0.129 4.129 16 C -0.141 4.141 17 C -0.248 4.248 18 C -0.073 4.073 19 O -0.055 6.055 20 N -0.362 5.362 21 C -0.366 4.366 22 H 0.085 0.915 23 C -0.207 4.207 24 N -0.580 5.580 25 Si 0.734 3.266 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.209 1.209 29 H 0.071 0.929 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.231 0.769 38 H 0.122 0.878 39 H 0.118 0.882 40 H 0.258 0.742 41 H 0.178 0.822 42 H 0.175 0.825 43 H 0.227 0.773 44 H 0.216 0.784 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 10.407 9.780 -13.171 19.427 hybrid contribution 0.158 0.288 1.058 1.108 sum 10.565 10.068 -12.112 18.966 Atomic orbital electron populations 1.22458 0.99506 1.00819 0.99806 1.20232 0.91611 0.95525 0.86542 0.93628 1.22176 0.93562 1.02339 0.98904 1.21078 0.95266 0.79677 0.99987 0.87500 1.22183 1.01470 1.00278 0.97995 1.45851 1.15984 1.12028 1.62176 1.20256 0.82649 0.89406 0.78278 1.90734 1.51039 1.56031 1.42777 1.21148 0.84945 0.95067 1.01662 1.45581 1.16548 1.11590 1.62013 1.16466 0.82728 0.82925 0.78671 1.90884 1.61854 1.41542 1.46041 1.21982 0.93849 0.88863 1.08182 1.21970 0.93547 0.98411 1.00148 1.21868 0.99536 0.96812 1.06544 1.24472 0.87719 0.94029 1.01100 1.84120 1.23619 1.37861 1.59875 1.42396 1.77993 1.10553 1.05263 1.19153 1.36417 0.93693 0.87372 0.91514 1.24687 1.02174 0.95932 0.97920 1.69648 1.50935 1.08621 1.28755 0.86264 0.77228 0.78865 0.84285 1.21831 1.21818 1.20904 0.92905 0.94679 0.93531 0.91944 0.90527 0.91632 0.93055 0.92548 0.76863 0.87833 0.88186 0.74236 0.82157 0.82544 0.77261 0.78356 0.93599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.83 9.49 37.16 0.35 -2.47 16 2 C 0.17 3.13 2.84 -67.92 -0.19 2.93 16 3 H 0.05 0.85 7.56 -51.93 -0.39 0.46 16 4 C -0.13 -1.89 4.29 -26.73 -0.11 -2.01 16 5 C 0.14 2.18 2.52 -67.94 -0.17 2.01 16 6 H 0.11 2.17 7.05 -51.93 -0.37 1.81 16 7 C -0.16 -2.07 9.48 37.16 0.35 -1.72 16 8 N -0.71 -9.41 4.45 -53.81 -0.24 -9.65 16 9 C 0.51 7.63 7.86 -10.99 -0.09 7.54 16 10 O -0.53 -10.11 15.33 5.56 0.09 -10.02 16 11 C 0.10 1.22 6.15 -5.19 -0.03 1.19 16 12 N -0.70 -9.50 5.52 -62.80 -0.35 -9.85 16 13 C 0.61 8.45 7.79 -12.86 -0.10 8.35 16 14 O -0.52 -8.30 16.87 5.19 0.09 -8.21 16 15 C -0.08 -0.96 7.13 -36.80 -0.26 -1.22 16 16 C -0.12 -1.28 10.62 -39.39 -0.42 -1.70 16 17 C -0.23 -1.91 10.88 -39.89 -0.43 -2.35 16 18 C 0.00 -0.02 12.08 29.63 0.36 0.33 16 19 O -0.16 -1.86 10.40 5.01 0.05 -1.81 16 20 N -0.72 -17.30 4.49 -53.42 -0.24 -17.54 16 21 C -0.24 -6.45 9.93 -15.06 -0.15 -6.60 16 22 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 23 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 24 N -0.93 -28.25 13.06 55.49 0.72 -27.52 16 25 Si 0.90 22.85 29.55 -169.99 -5.02 17.83 16 26 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 27 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 28 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 29 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 35 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.40 4.02 8.60 -40.82 -0.35 3.67 16 38 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.42 5.90 7.19 -40.82 -0.29 5.60 16 41 H 0.16 1.53 8.06 -52.49 -0.42 1.11 16 42 H 0.16 0.87 8.06 -52.49 -0.42 0.45 16 43 H 0.21 0.87 8.06 -52.49 -0.42 0.44 16 44 H 0.38 9.90 7.80 -40.82 -0.32 9.58 16 45 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 387.48 15.07 5.84 5.84 Total: -1.00 -34.90 387.48 -6.82 -41.72 By element: Atomic # 1 Polarization: 22.11 SS G_CDS: -6.76 Total: 15.34 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: -0.99 Total: 3.87 kcal Atomic # 7 Polarization: -64.46 SS G_CDS: -0.10 Total: -64.56 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: 0.22 Total: -20.04 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.02 Total: 17.83 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.90 -6.82 -41.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136116355.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.442 kcal (2) G-P(sol) polarization free energy of solvation -34.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds