Wall clock time and date at job start Tue Mar 31 2020 13:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47341 * 2 1 4 4 N 1.46497 * 109.47331 * 179.97438 * 3 2 1 5 5 C 1.37334 * 119.79237 * 94.84443 * 4 3 2 6 6 N 1.37849 * 120.27375 * 359.95440 * 5 4 3 7 7 C 1.34768 * 120.00104 * 95.55791 * 6 5 4 8 8 O 1.21256 * 120.00198 * 354.99784 * 7 6 5 9 9 C 1.50694 * 120.00124 * 174.73017 * 7 6 5 10 10 C 1.50705 * 109.47556 * 180.27238 * 9 7 6 11 11 H 1.08001 * 119.99432 * 359.97438 * 10 9 7 12 12 C 1.37876 * 120.00314 * 179.97438 * 10 9 7 13 13 N 1.31506 * 119.99913 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 119.99751 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47095 * 90.00424 * 14 12 10 16 16 H 1.48499 * 109.46792 * 210.00066 * 14 12 10 17 17 H 1.48500 * 109.47112 * 329.99923 * 14 12 10 18 18 C 1.36454 * 119.44647 * 180.22998 * 5 4 3 19 19 C 1.40616 * 119.05974 * 359.51265 * 18 5 4 20 20 O 1.21884 * 120.21913 * 180.26922 * 19 18 5 21 21 N 1.34774 * 119.55910 * 0.48500 * 19 18 5 22 22 C 1.46493 * 119.73368 * 179.78311 * 21 19 18 23 23 C 1.52999 * 109.46902 * 269.97556 * 22 21 19 24 24 C 1.53002 * 109.47350 * 180.02562 * 23 22 21 25 25 C 1.34547 * 120.52401 * 359.75979 * 21 19 18 26 26 O 1.21587 * 119.50150 * 180.02562 * 25 21 19 27 27 H 1.09000 * 109.47512 * 60.00147 * 1 2 3 28 28 H 1.09000 * 109.47156 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47234 * 300.00135 * 1 2 3 30 30 H 1.09004 * 109.47234 * 239.99865 * 2 1 3 31 31 H 1.09000 * 109.47512 * 119.99852 * 2 1 3 32 32 H 1.09004 * 109.47067 * 59.99763 * 3 2 1 33 33 H 1.09000 * 109.46697 * 300.00352 * 3 2 1 34 34 H 0.97001 * 119.99376 * 275.55096 * 6 5 4 35 35 H 1.08996 * 109.47312 * 300.26838 * 9 7 6 36 36 H 1.08998 * 109.47817 * 60.27215 * 9 7 6 37 37 H 0.97007 * 120.00193 * 179.97438 * 13 12 10 38 38 H 1.07997 * 120.46574 * 179.72273 * 18 5 4 39 39 H 1.08990 * 109.47691 * 29.97680 * 22 21 19 40 40 H 1.08999 * 109.47230 * 149.98087 * 22 21 19 41 41 H 1.09000 * 109.47450 * 300.00200 * 23 22 21 42 42 H 1.09004 * 109.47341 * 60.00598 * 23 22 21 43 43 H 1.09007 * 109.47112 * 300.00175 * 24 23 22 44 44 H 1.08999 * 109.47269 * 60.00232 * 24 23 22 45 45 H 1.08998 * 109.47467 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1878 1.5430 -1.1867 6 7 3.5004 1.6427 -2.3774 7 6 3.2616 2.8538 -2.9182 8 8 3.5704 3.8590 -2.3144 9 6 2.6162 2.9588 -4.2759 10 6 2.4676 4.4109 -4.6507 11 1 2.8063 5.1808 -3.9732 12 6 1.8994 4.7566 -5.8584 13 7 1.4874 3.8191 -6.6835 14 14 1.7147 6.5566 -6.3225 15 1 2.9295 7.0080 -7.0475 16 1 0.5260 6.7227 -7.1969 17 1 1.5416 7.3698 -5.0921 18 6 5.5523 1.5375 -1.1783 19 6 6.2274 1.4392 0.0513 20 8 7.4458 1.4373 0.0837 21 7 5.5182 1.3426 1.1933 22 6 6.2176 1.2351 2.4760 23 6 6.4615 -0.2397 2.8018 24 6 7.1914 -0.3521 4.1418 25 6 4.1730 1.3445 1.1646 26 8 3.5518 1.2569 2.2061 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 3.1888 0.8412 -2.8260 35 1 3.2396 2.4550 -5.0145 36 1 1.6333 2.4884 -4.2484 37 1 1.0873 4.0623 -7.5331 38 1 6.1059 1.6111 -2.1027 39 1 7.1728 1.7563 2.4138 40 1 5.6089 1.6846 3.2605 41 1 5.5062 -0.7609 2.8641 42 1 7.0703 -0.6893 2.0174 43 1 8.1468 0.1692 4.0800 44 1 6.5824 0.0973 4.9261 45 1 7.3656 -1.4027 4.3738 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143202958.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:00 Heat of formation + Delta-G solvation = -99.461636 kcal Electronic energy + Delta-G solvation = -28275.443938 eV Core-core repulsion = 24292.903364 eV Total energy + Delta-G solvation = -3982.540574 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.71543 -41.24463 -40.30070 -38.75861 -36.92818 -35.88419 -35.31652 -35.12267 -33.69893 -32.01577 -30.92951 -28.14273 -27.47869 -26.16897 -24.73247 -24.43164 -22.87628 -22.48453 -21.93061 -20.74444 -19.27266 -18.93194 -18.50044 -17.99525 -17.63069 -17.31599 -16.83253 -16.52439 -16.24891 -16.00453 -15.84270 -15.67897 -15.50547 -14.88939 -14.70817 -14.67173 -14.32031 -14.22174 -13.46087 -13.31295 -13.22477 -13.10930 -13.03824 -12.85480 -12.77901 -12.60897 -12.46657 -12.16452 -12.07326 -11.98115 -11.75637 -11.74884 -11.66094 -11.46407 -10.95790 -10.93895 -10.86209 -10.60499 -9.72719 -8.25488 -6.31532 -0.41609 0.62118 0.73725 1.41991 1.44041 1.47666 1.53947 1.68734 2.01306 2.22259 2.43770 3.11794 3.28283 3.74600 3.79205 3.85665 3.86736 3.97224 4.06027 4.13090 4.20107 4.26733 4.36986 4.42848 4.49355 4.54771 4.60958 4.68090 4.81671 4.83241 5.05422 5.06387 5.07565 5.07999 5.12668 5.24311 5.28819 5.32512 5.35203 5.40248 5.72446 5.94385 5.98074 6.25114 6.32739 6.67779 6.80299 7.11340 7.38240 8.85730 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.016678 B = 0.003328 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.425766 B = 8410.916569 C = 9451.372834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.128 4.128 3 C 0.103 3.897 4 N -0.531 5.531 5 C 0.443 3.557 6 N -0.679 5.679 7 C 0.538 3.462 8 O -0.554 6.554 9 C 0.016 3.984 10 C -0.538 4.538 11 H 0.055 0.945 12 C 0.019 3.981 13 N -0.918 5.918 14 Si 0.954 3.046 15 H -0.275 1.275 16 H -0.276 1.276 17 H -0.276 1.276 18 C -0.297 4.297 19 C 0.556 3.444 20 O -0.543 6.543 21 N -0.553 5.553 22 C 0.104 3.896 23 C -0.129 4.129 24 C -0.142 4.142 25 C 0.700 3.300 26 O -0.550 6.550 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.058 0.942 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.439 0.561 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.268 0.732 38 H 0.177 0.823 39 H 0.100 0.900 40 H 0.102 0.898 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.062 0.938 44 H 0.064 0.936 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.236 -12.788 15.200 19.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.166 4.166 3 C -0.018 4.018 4 N -0.254 5.254 5 C 0.245 3.755 6 N -0.339 5.339 7 C 0.330 3.670 8 O -0.428 6.428 9 C -0.024 4.024 10 C -0.576 4.576 11 H 0.073 0.927 12 C -0.181 4.181 13 N -0.557 5.557 14 Si 0.780 3.220 15 H -0.201 1.201 16 H -0.201 1.201 17 H -0.201 1.201 18 C -0.325 4.325 19 C 0.354 3.646 20 O -0.422 6.422 21 N -0.296 5.296 22 C -0.016 4.016 23 C -0.167 4.167 24 C -0.200 4.200 25 C 0.403 3.597 26 O -0.424 6.424 27 H 0.080 0.920 28 H 0.093 0.907 29 H 0.077 0.923 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.113 0.887 33 H 0.112 0.888 34 H 0.283 0.717 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.194 0.806 39 H 0.118 0.882 40 H 0.120 0.880 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.081 0.919 44 H 0.083 0.917 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.595 -12.112 16.118 20.328 hybrid contribution -0.230 0.736 -0.818 1.125 sum 2.365 -11.376 15.299 19.211 Atomic orbital electron populations 1.21666 0.92910 1.03247 1.02567 1.21813 0.98051 0.93602 1.03147 1.22149 0.73747 1.00736 1.05177 1.45686 1.10215 1.65279 1.04171 1.17747 0.88784 0.88337 0.80605 1.43397 1.59864 1.11308 1.19378 1.21954 0.75796 0.80790 0.88475 1.90634 1.51372 1.37160 1.63637 1.19126 0.97533 0.98573 0.87127 1.21319 1.40519 0.92594 1.03195 0.92700 1.25604 0.94870 1.01518 0.96099 1.69981 1.41488 1.33919 1.10359 0.85602 0.77950 0.80415 0.78030 1.20076 1.20093 1.20096 1.21998 0.91497 1.19277 0.99748 1.16936 0.87680 0.76127 0.83905 1.90873 1.13371 1.50695 1.87216 1.46569 1.05743 1.65744 1.11539 1.22038 0.98046 0.99836 0.81678 1.21751 1.01239 0.94085 0.99639 1.21642 1.00399 1.03023 0.94897 1.15715 0.81740 0.78524 0.83701 1.90976 1.66334 1.55100 1.29994 0.91957 0.90668 0.92314 0.90335 0.91669 0.88685 0.88787 0.71716 0.92381 0.92059 0.92337 0.80570 0.88220 0.88006 0.91976 0.92267 0.91853 0.91651 0.91089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 9.91 71.98 0.71 -1.46 16 2 C -0.13 -2.24 6.22 30.59 0.19 -2.05 16 3 C 0.10 2.36 5.11 86.38 0.44 2.80 16 4 N -0.53 -14.12 2.63 -654.27 -1.72 -15.84 16 5 C 0.44 12.22 5.96 131.28 0.78 13.01 16 6 N -0.68 -18.11 4.04 -308.11 -1.24 -19.35 16 7 C 0.54 20.39 7.36 87.66 0.65 21.03 16 8 O -0.55 -25.74 15.43 -2.96 -0.05 -25.79 16 9 C 0.02 0.68 5.46 29.10 0.16 0.84 16 10 C -0.54 -28.55 8.92 25.60 0.23 -28.32 16 11 H 0.05 3.11 6.75 -2.91 -0.02 3.09 16 12 C 0.02 0.99 5.46 84.66 0.46 1.45 16 13 N -0.92 -49.33 13.29 21.45 0.28 -49.05 16 14 Si 0.95 42.63 29.54 68.60 2.03 44.65 16 15 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 16 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 17 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 18 C -0.30 -8.63 9.90 22.43 0.22 -8.40 16 19 C 0.56 17.09 7.41 84.82 0.63 17.72 16 20 O -0.54 -18.96 16.67 -4.94 -0.08 -19.04 16 21 N -0.55 -15.34 2.56 -783.89 -2.00 -17.35 16 22 C 0.10 2.38 5.08 86.38 0.44 2.82 16 23 C -0.13 -2.48 6.26 30.59 0.19 -2.29 16 24 C -0.14 -1.99 9.91 71.98 0.71 -1.28 16 25 C 0.70 19.92 8.08 179.19 1.45 21.36 16 26 O -0.55 -16.66 15.42 -3.99 -0.06 -16.72 16 27 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.09 2.29 7.53 -2.39 -0.02 2.27 16 33 H 0.09 2.29 6.85 -2.39 -0.02 2.27 16 34 H 0.44 8.35 8.82 -92.71 -0.82 7.53 16 35 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 36 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 37 H 0.27 13.64 8.31 -92.70 -0.77 12.87 16 38 H 0.18 4.93 8.06 -2.91 -0.02 4.91 16 39 H 0.10 2.27 7.41 -2.39 -0.02 2.25 16 40 H 0.10 2.21 7.38 -2.39 -0.02 2.19 16 41 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 43 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 44 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 45 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -67.54 380.76 4.60 -62.94 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: 0.19 Total: 18.32 kcal Atomic # 6 Polarization: 29.96 SS G_CDS: 7.27 Total: 37.23 kcal Atomic # 7 Polarization: -96.90 SS G_CDS: -4.69 Total: -101.59 kcal Atomic # 8 Polarization: -61.36 SS G_CDS: -0.19 Total: -61.55 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.65 kcal Total: -67.54 4.60 -62.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143202958.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.526 kcal (2) G-P(sol) polarization free energy of solvation -67.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds