Wall clock time and date at job start Tue Mar 31 2020 14:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46894 * 109.47349 * 2 1 4 4 C 1.46897 * 110.99990 * 160.18321 * 3 2 1 5 5 C 1.50709 * 109.46921 * 288.34431 * 4 3 2 6 6 O 1.21294 * 119.99907 * 354.48082 * 5 4 3 7 7 N 1.34776 * 119.99936 * 174.48706 * 5 4 3 8 8 C 1.37093 * 119.99578 * 179.97438 * 7 5 4 9 9 H 1.08004 * 120.00487 * 0.02562 * 8 7 5 10 10 C 1.38952 * 119.99947 * 179.97438 * 8 7 5 11 11 N 1.31410 * 119.99900 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00188 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.47202 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.46965 * 120.00208 * 12 10 8 15 15 H 1.48496 * 109.47312 * 240.00296 * 12 10 8 16 16 C 1.46904 * 110.99900 * 284.13192 * 3 2 1 17 17 H 1.08995 * 109.47273 * 50.00032 * 16 3 2 18 18 C 1.53007 * 109.47102 * 290.00133 * 16 3 2 19 19 C 1.53001 * 109.47207 * 170.00224 * 16 3 2 20 20 N 1.46501 * 109.46971 * 303.78321 * 19 16 3 21 21 C 1.34770 * 119.99935 * 174.86578 * 20 19 16 22 22 O 1.21689 * 120.00500 * 359.97438 * 21 20 19 23 23 C 1.46665 * 119.99933 * 179.97438 * 21 20 19 24 24 C 1.36545 * 125.98887 * 180.02562 * 23 21 20 25 25 C 1.40362 * 106.70638 * 180.02562 * 24 23 21 26 26 C 1.35125 * 107.11918 * 0.02562 * 25 24 23 27 27 O 1.33936 * 108.76727 * 359.97438 * 26 25 24 28 28 H 1.08999 * 109.47042 * 66.05302 * 1 2 3 29 29 H 1.08991 * 109.47592 * 186.05388 * 1 2 3 30 30 H 1.09006 * 109.46727 * 306.06184 * 1 2 3 31 31 H 1.09004 * 109.46933 * 239.99865 * 2 1 3 32 32 H 1.08999 * 109.46671 * 120.00206 * 2 1 3 33 33 H 1.09000 * 109.47916 * 48.34066 * 4 3 2 34 34 H 1.09004 * 109.47510 * 168.34593 * 4 3 2 35 35 H 0.96995 * 120.00204 * 359.97438 * 7 5 4 36 36 H 0.97001 * 120.00216 * 179.97438 * 11 10 8 37 37 H 1.08998 * 109.46930 * 59.99803 * 18 16 3 38 38 H 1.09001 * 109.46864 * 180.02562 * 18 16 3 39 39 H 1.09003 * 109.47034 * 299.99759 * 18 16 3 40 40 H 1.08994 * 109.46824 * 183.78298 * 19 16 3 41 41 H 1.09001 * 109.47371 * 63.78020 * 19 16 3 42 42 H 0.97006 * 119.99612 * 354.85892 * 20 19 16 43 43 H 1.08003 * 126.64435 * 359.97438 * 24 23 21 44 44 H 1.08001 * 126.43807 * 180.02562 * 25 24 23 45 45 H 1.07998 * 125.62158 * 180.26100 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4116 1.4511 0.4649 5 6 3.4594 1.1823 1.9471 6 8 2.4288 1.0570 2.5743 7 7 4.6474 1.0813 2.5756 8 6 4.6908 0.8373 3.9240 9 1 3.7731 0.7256 4.4824 10 6 5.9155 0.7326 4.5719 11 7 7.0321 0.8679 3.8924 12 14 5.9747 0.4008 6.4093 13 1 4.5912 0.2905 6.9373 14 1 6.7023 -0.8693 6.6597 15 1 6.6778 1.5168 7.0914 16 6 1.8795 1.9929 -1.3300 17 1 0.8651 1.8356 -1.6963 18 6 2.8759 1.3458 -2.2941 19 6 2.1612 3.4938 -1.2369 20 7 1.2667 4.0980 -0.2464 21 6 1.4039 5.3981 0.0811 22 8 2.2710 6.0701 -0.4455 23 6 0.5080 6.0031 1.0723 24 6 0.5371 7.3018 1.4932 25 6 -0.4896 7.4422 2.4399 26 6 -1.0923 6.2383 2.5545 27 8 -0.4886 5.3737 1.7287 28 1 -0.3633 0.4171 -0.9392 29 1 -0.3634 -1.0218 0.1084 30 1 -0.3633 0.6050 0.8308 31 1 1.8933 -0.5139 -0.8900 32 1 1.8932 -0.5139 0.8900 33 1 4.0059 0.7027 -0.0593 34 1 3.8156 2.4430 0.2624 35 1 5.4715 1.1812 2.0740 36 1 7.8871 0.7952 4.3448 37 1 2.6752 0.2765 -2.3604 38 1 2.7721 1.7972 -3.2808 39 1 3.8904 1.5031 -1.9279 40 1 1.9918 3.9562 -2.2093 41 1 3.1967 3.6512 -0.9351 42 1 0.5756 3.5623 0.1736 43 1 1.2186 8.0715 1.1623 44 1 -0.7490 8.3431 2.9760 45 1 -1.9267 6.0116 3.2016 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001151572478.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:31 Heat of formation + Delta-G solvation = -72.913620 kcal Electronic energy + Delta-G solvation = -28075.832666 eV Core-core repulsion = 24094.443301 eV Total energy + Delta-G solvation = -3981.389365 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.61199 -40.97740 -40.22380 -38.85284 -35.99670 -35.58812 -34.02019 -33.28136 -32.86251 -31.39609 -30.83007 -27.95882 -27.52046 -26.02700 -24.20123 -23.35277 -22.66171 -21.72669 -21.23524 -20.38164 -19.78827 -19.29825 -18.16265 -17.38328 -17.30261 -17.20445 -16.89208 -16.41676 -16.19426 -15.79698 -15.70873 -15.50741 -15.05525 -14.91470 -14.34242 -14.09620 -13.95135 -13.92567 -13.74304 -13.63744 -13.54979 -13.46628 -13.08068 -12.92935 -12.87213 -12.41536 -12.37354 -12.32272 -12.12441 -11.88246 -11.51960 -11.46128 -11.39034 -11.03389 -10.27703 -10.21501 -9.98328 -9.60828 -9.15540 -8.45721 -5.93986 0.05420 1.35507 1.39887 1.44007 1.54125 1.72511 2.08692 2.11954 2.25541 2.30354 2.75575 3.21194 3.39154 3.72013 3.78132 3.97257 4.01156 4.12686 4.16255 4.24468 4.30977 4.41636 4.52664 4.56513 4.62340 4.63627 4.69332 4.75675 4.83875 4.87975 4.90552 4.96615 5.14484 5.21201 5.25480 5.35304 5.41132 5.42030 5.46771 5.86851 5.91466 6.11272 6.24210 6.46529 6.62085 7.02011 7.14761 7.58898 8.14972 8.72242 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.008968 B = 0.004139 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3121.467678 B = 6763.358071 C = 8405.794509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.055 3.945 3 N -0.520 5.520 4 C 0.058 3.942 5 C 0.443 3.557 6 O -0.607 6.607 7 N -0.580 5.580 8 C -0.328 4.328 9 H 0.078 0.922 10 C -0.015 4.015 11 N -0.923 5.923 12 Si 0.991 3.009 13 H -0.273 1.273 14 H -0.270 1.270 15 H -0.273 1.273 16 C 0.072 3.928 17 H 0.114 0.886 18 C -0.182 4.182 19 C 0.125 3.875 20 N -0.693 5.693 21 C 0.595 3.405 22 O -0.566 6.566 23 C -0.110 4.110 24 C -0.130 4.130 25 C -0.232 4.232 26 C 0.003 3.997 27 O -0.173 6.173 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.044 0.956 31 H 0.055 0.945 32 H 0.042 0.958 33 H 0.068 0.932 34 H 0.093 0.907 35 H 0.393 0.607 36 H 0.276 0.724 37 H 0.070 0.930 38 H 0.086 0.914 39 H 0.055 0.945 40 H 0.091 0.909 41 H 0.056 0.944 42 H 0.416 0.584 43 H 0.160 0.840 44 H 0.186 0.814 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.568 5.916 -11.275 19.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.073 4.073 3 N -0.244 5.244 4 C -0.073 4.073 5 C 0.230 3.770 6 O -0.493 6.493 7 N -0.218 5.218 8 C -0.457 4.457 9 H 0.096 0.904 10 C -0.214 4.214 11 N -0.565 5.565 12 Si 0.815 3.185 13 H -0.197 1.197 14 H -0.195 1.195 15 H -0.198 1.198 16 C -0.037 4.037 17 H 0.132 0.868 18 C -0.241 4.241 19 C 0.001 3.999 20 N -0.342 5.342 21 C 0.382 3.618 22 O -0.449 6.449 23 C -0.162 4.162 24 C -0.151 4.151 25 C -0.251 4.251 26 C -0.066 4.066 27 O -0.069 6.069 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.086 0.914 34 H 0.111 0.889 35 H 0.226 0.774 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.105 0.895 39 H 0.074 0.926 40 H 0.110 0.890 41 H 0.074 0.926 42 H 0.252 0.748 43 H 0.178 0.822 44 H 0.203 0.797 45 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -14.809 6.188 -10.921 19.413 hybrid contribution 1.205 -0.550 0.639 1.471 sum -13.604 5.638 -10.282 17.960 Atomic orbital electron populations 1.21643 0.93574 1.01758 1.02051 1.22059 0.97288 0.87877 1.00044 1.61730 1.18164 1.19799 1.24736 1.21694 0.91607 1.02550 0.91483 1.20804 0.83407 0.82157 0.90604 1.90482 1.34161 1.55877 1.68730 1.41970 1.07268 1.63905 1.08642 1.19660 0.93821 1.47335 0.84917 0.90385 1.26019 0.94055 0.96800 1.04546 1.69686 0.98060 1.50427 1.38305 0.84895 0.78241 0.78239 0.77114 1.19730 1.19513 1.19830 1.22107 1.02058 0.91762 0.87730 0.86836 1.22377 0.99238 1.01883 1.00562 1.21639 0.93551 0.92582 0.92106 1.45708 1.36357 1.09251 1.42932 1.16786 0.82224 0.82474 0.80330 1.90819 1.35571 1.63203 1.55275 1.22012 0.96626 0.93871 1.03699 1.22250 0.99967 0.95183 0.97694 1.22212 0.98776 1.00960 1.03158 1.25374 0.99326 0.87740 0.94160 1.84093 1.37990 1.40035 1.44757 0.90989 0.91775 0.93709 0.92732 0.93976 0.91377 0.88888 0.77396 0.91447 0.91100 0.89474 0.92632 0.89047 0.92618 0.74782 0.82245 0.79682 0.73245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.10 9.93 71.98 0.71 -2.39 16 2 C 0.05 1.53 5.14 86.30 0.44 1.98 16 3 N -0.52 -15.12 3.56 -875.50 -3.12 -18.24 16 4 C 0.06 2.02 4.19 85.56 0.36 2.37 16 5 C 0.44 21.33 7.19 87.66 0.63 21.96 16 6 O -0.61 -33.28 14.90 -3.07 -0.05 -33.33 16 7 N -0.58 -30.55 5.29 -306.97 -1.62 -32.18 16 8 C -0.33 -18.97 9.68 84.04 0.81 -18.16 16 9 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 10 C -0.02 -0.82 5.50 84.93 0.47 -0.35 16 11 N -0.92 -51.14 13.05 21.66 0.28 -50.85 16 12 Si 0.99 43.88 29.55 68.60 2.03 45.91 16 13 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 14 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 15 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 16 C 0.07 1.49 2.35 44.92 0.11 1.59 16 17 H 0.11 1.92 6.74 -2.39 -0.02 1.90 16 18 C -0.18 -3.09 8.51 71.98 0.61 -2.48 16 19 C 0.12 3.00 4.91 86.38 0.42 3.43 16 20 N -0.69 -19.47 5.36 -467.11 -2.50 -21.97 16 21 C 0.59 19.39 7.79 86.44 0.67 20.07 16 22 O -0.57 -21.37 16.86 -4.31 -0.07 -21.44 16 23 C -0.11 -3.28 7.13 24.08 0.17 -3.11 16 24 C -0.13 -3.37 10.62 22.39 0.24 -3.13 16 25 C -0.23 -4.45 10.87 22.07 0.24 -4.21 16 26 C 0.00 0.06 12.08 67.10 0.81 0.87 16 27 O -0.17 -4.59 10.40 -5.11 -0.05 -4.64 16 28 H 0.07 1.28 6.99 -2.39 -0.02 1.26 16 29 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.04 1.25 8.14 -2.38 -0.02 1.23 16 31 H 0.05 1.25 6.17 -2.38 -0.01 1.24 16 32 H 0.04 1.55 6.56 -2.39 -0.02 1.53 16 33 H 0.07 2.13 7.12 -2.39 -0.02 2.11 16 34 H 0.09 3.17 6.01 -2.38 -0.01 3.16 16 35 H 0.39 19.96 7.90 -92.71 -0.73 19.23 16 36 H 0.28 14.30 8.31 -92.71 -0.77 13.53 16 37 H 0.07 1.15 6.45 -2.39 -0.02 1.13 16 38 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.05 1.07 6.68 -2.39 -0.02 1.06 16 40 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.06 1.57 6.44 -2.39 -0.02 1.55 16 42 H 0.42 11.43 8.03 -92.70 -0.74 10.68 16 43 H 0.16 3.92 8.06 -2.91 -0.02 3.90 16 44 H 0.19 2.26 8.06 -2.91 -0.02 2.24 16 45 H 0.25 2.09 8.06 -2.91 -0.02 2.07 16 Total: -1.00 -75.61 373.48 1.16 -74.45 By element: Atomic # 1 Polarization: 44.29 SS G_CDS: -0.44 Total: 43.85 kcal Atomic # 6 Polarization: 11.73 SS G_CDS: 6.70 Total: 18.44 kcal Atomic # 7 Polarization: -116.28 SS G_CDS: -6.96 Total: -123.24 kcal Atomic # 8 Polarization: -59.24 SS G_CDS: -0.17 Total: -59.41 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -75.61 1.16 -74.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151572478.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.535 kcal (2) G-P(sol) polarization free energy of solvation -75.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds