Wall clock time and date at job start Tue Mar 31 2020 14:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46506 * 109.47387 * 2 1 4 4 C 1.36936 * 119.99625 * 84.32349 * 3 2 1 5 5 H 1.07990 * 120.00224 * 32.48975 * 4 3 2 6 6 C 1.38817 * 119.99356 * 212.76160 * 4 3 2 7 7 N 1.31612 * 120.00555 * 10.70701 * 6 4 3 8 8 Si 1.86806 * 119.99619 * 190.70786 * 6 4 3 9 9 H 1.48494 * 109.47276 * 60.00112 * 8 6 4 10 10 H 1.48501 * 109.46753 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47111 * 300.00113 * 8 6 4 12 12 C 1.46503 * 119.99904 * 264.32781 * 3 2 1 13 13 H 1.08997 * 109.46764 * 183.65693 * 12 3 2 14 14 C 1.52996 * 109.47224 * 63.65636 * 12 3 2 15 15 C 1.53000 * 109.46835 * 303.65816 * 12 3 2 16 16 N 1.46509 * 109.47024 * 304.99655 * 15 12 3 17 17 C 1.34769 * 119.99809 * 180.02562 * 16 15 12 18 18 O 1.21517 * 120.00272 * 0.02562 * 17 16 15 19 19 C 1.48072 * 120.00083 * 180.02562 * 17 16 15 20 20 C 1.36171 * 119.72211 * 179.72871 * 19 17 16 21 21 C 1.41632 * 119.19172 * 179.80218 * 20 19 17 22 22 O 1.22259 * 120.65814 * 180.19461 * 21 20 19 23 23 C 1.41572 * 118.68715 * 0.46739 * 21 20 19 24 24 O 1.36010 * 120.31434 * 179.73558 * 23 21 20 25 25 C 1.42902 * 116.99916 * 180.02562 * 24 23 21 26 26 C 1.35856 * 119.37121 * 359.75470 * 23 21 20 27 27 N 1.35441 * 120.77991 * 0.02696 * 26 23 21 28 28 H 0.96994 * 119.29622 * 180.02562 * 27 26 23 29 29 H 1.09007 * 109.46758 * 299.99532 * 1 2 3 30 30 H 1.08996 * 109.47537 * 59.99396 * 1 2 3 31 31 H 1.09002 * 109.46937 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47369 * 240.00177 * 2 1 3 33 33 H 1.09002 * 109.47414 * 120.00164 * 2 1 3 34 34 H 0.96996 * 120.00441 * 179.97438 * 7 6 4 35 35 H 1.08995 * 109.47149 * 59.99707 * 14 12 3 36 36 H 1.09002 * 109.47241 * 179.97438 * 14 12 3 37 37 H 1.09005 * 109.47164 * 299.99977 * 14 12 3 38 38 H 1.08995 * 109.47720 * 64.99986 * 15 12 3 39 39 H 1.08997 * 109.46842 * 185.00542 * 15 12 3 40 40 H 0.97000 * 119.99575 * 0.02562 * 16 15 12 41 41 H 1.08007 * 120.40888 * 0.02562 * 20 19 17 42 42 H 1.09000 * 109.47217 * 59.99849 * 25 24 23 43 43 H 1.09003 * 109.46920 * 179.97438 * 25 24 23 44 44 H 1.09001 * 109.47190 * 299.99385 * 25 24 23 45 45 H 1.08001 * 119.60850 * 179.97438 * 26 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1360 2.0658 1.1801 5 1 2.3891 1.5380 2.0876 6 6 1.9243 3.4374 1.2109 7 7 1.4087 4.0474 0.1648 8 14 2.3712 4.4174 2.7371 9 1 3.8234 4.2723 3.0109 10 1 2.0491 5.8503 2.5172 11 1 1.5956 3.9085 3.8968 12 6 2.3808 2.0300 -1.2626 13 1 2.7805 3.0234 -1.0589 14 6 1.1392 2.1515 -2.1483 15 6 3.4398 1.1916 -1.9811 16 7 4.5802 0.9749 -1.0873 17 6 5.6406 0.2583 -1.5095 18 8 5.6511 -0.2078 -2.6317 19 6 6.7930 0.0387 -0.6060 20 6 7.8591 -0.6909 -1.0365 21 6 8.9571 -0.8904 -0.1645 22 8 9.9296 -1.5379 -0.5245 23 6 8.9038 -0.3300 1.1345 24 8 9.9375 -0.5055 2.0009 25 6 9.8090 0.0902 3.2934 26 6 7.8102 0.3845 1.5076 27 7 6.7751 0.5645 0.6529 28 1 6.0051 1.0787 0.9416 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.2605 5.0057 0.1864 35 1 0.3847 2.7488 -1.6364 36 1 1.4088 2.6347 -3.0875 37 1 0.7395 1.1581 -2.3520 38 1 3.0117 0.2298 -2.2636 39 1 3.7741 1.7173 -2.8755 40 1 4.5720 1.3472 -0.1916 41 1 7.8689 -1.1094 -2.0322 42 1 8.9326 -0.3186 3.7964 43 1 10.6998 -0.1259 3.8833 44 1 9.6965 1.1691 3.1867 45 1 7.7654 0.8134 2.4978 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154322170.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:19 Heat of formation + Delta-G solvation = -65.260235 kcal Electronic energy + Delta-G solvation = -28218.513104 eV Core-core repulsion = 24237.455614 eV Total energy + Delta-G solvation = -3981.057490 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.50635 -40.81729 -39.13317 -38.78903 -38.56039 -35.58431 -33.70758 -32.80215 -32.61240 -31.60010 -30.06564 -28.50944 -27.42382 -25.84817 -25.01589 -24.14090 -23.26930 -21.84400 -21.23753 -20.52162 -19.21290 -18.85475 -18.43493 -17.31400 -17.17118 -16.99727 -16.71166 -16.56131 -16.15015 -15.91820 -15.58274 -15.38482 -15.23291 -15.05673 -14.66760 -14.41777 -14.26376 -13.99178 -13.81604 -13.62325 -13.25877 -13.06769 -12.91647 -12.79052 -12.54816 -12.39647 -12.27276 -12.19047 -12.10886 -11.74457 -11.47194 -11.25235 -11.22898 -10.72565 -10.55686 -10.41697 -10.10944 -8.78721 -8.50733 -7.76437 -5.28309 -0.49580 0.12348 1.51104 1.54019 1.60049 1.64118 1.67907 1.84744 2.31156 2.56941 2.58457 3.39869 3.40569 3.53835 3.64768 3.68665 3.84160 4.23885 4.34533 4.44082 4.46450 4.48853 4.55723 4.61162 4.75934 4.81392 4.87464 4.92976 4.94077 5.01516 5.05511 5.11713 5.21570 5.29524 5.37500 5.45041 5.64162 5.72868 5.77629 5.82116 5.97493 6.24500 6.38476 6.54799 6.89307 6.91283 7.29595 7.96206 8.48134 9.27366 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012452 B = 0.003987 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.150454 B = 7020.323803 C = 8450.824755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.140 3.860 3 N -0.591 5.591 4 C -0.260 4.260 5 H 0.071 0.929 6 C -0.030 4.030 7 N -0.916 5.916 8 Si 0.951 3.049 9 H -0.263 1.263 10 H -0.310 1.310 11 H -0.290 1.290 12 C 0.184 3.816 13 H 0.082 0.918 14 C -0.134 4.134 15 C 0.109 3.891 16 N -0.685 5.685 17 C 0.554 3.446 18 O -0.549 6.549 19 C 0.147 3.853 20 C -0.231 4.231 21 C 0.382 3.618 22 O -0.567 6.567 23 C -0.059 4.059 24 O -0.321 6.321 25 C 0.005 3.995 26 C 0.071 3.929 27 N -0.537 5.537 28 H 0.439 0.561 29 H 0.029 0.971 30 H 0.040 0.960 31 H 0.054 0.946 32 H 0.049 0.951 33 H 0.043 0.957 34 H 0.246 0.754 35 H 0.049 0.951 36 H 0.043 0.957 37 H 0.039 0.961 38 H 0.061 0.939 39 H 0.066 0.934 40 H 0.412 0.588 41 H 0.154 0.846 42 H 0.075 0.925 43 H 0.114 0.886 44 H 0.075 0.925 45 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.631 -2.723 5.906 9.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.014 3.986 3 N -0.314 5.314 4 C -0.390 4.390 5 H 0.089 0.911 6 C -0.228 4.228 7 N -0.561 5.561 8 Si 0.781 3.219 9 H -0.188 1.188 10 H -0.238 1.238 11 H -0.217 1.217 12 C 0.076 3.924 13 H 0.100 0.900 14 C -0.194 4.194 15 C -0.016 4.016 16 N -0.336 5.336 17 C 0.338 3.662 18 O -0.426 6.426 19 C 0.032 3.968 20 C -0.258 4.258 21 C 0.278 3.722 22 O -0.457 6.457 23 C -0.109 4.109 24 O -0.234 6.234 25 C -0.089 4.089 26 C -0.058 4.058 27 N -0.150 5.150 28 H 0.280 0.720 29 H 0.048 0.952 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.058 0.942 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.250 0.750 41 H 0.172 0.828 42 H 0.094 0.906 43 H 0.132 0.868 44 H 0.093 0.907 45 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 7.260 -3.303 4.918 9.371 hybrid contribution -0.759 1.296 1.223 1.937 sum 6.502 -2.007 6.141 9.166 Atomic orbital electron populations 1.22283 0.99551 0.99638 1.00412 1.20907 0.92104 0.86616 0.98960 1.44130 1.74239 1.10353 1.02636 1.19334 1.40954 0.90092 0.88614 0.91109 1.25733 0.99110 0.99218 0.98715 1.70067 1.46567 1.08806 1.30614 0.85623 0.78889 0.77009 0.80376 1.18826 1.23754 1.21716 1.20393 0.91366 0.95700 0.84913 0.90001 1.21982 0.99601 0.99581 0.98198 1.22077 0.86253 1.00674 0.92582 1.45800 1.17007 1.51805 1.18939 1.18016 0.82183 0.79602 0.86406 1.90816 1.80395 1.51097 1.20339 1.20121 0.95378 0.95899 0.85424 1.22256 0.94099 1.05988 1.03474 1.17201 0.87318 0.81137 0.86536 1.90796 1.35572 1.40508 1.78828 1.20156 0.91219 1.05660 0.93883 1.86227 1.38393 1.73387 1.25359 1.23507 1.05430 0.98989 0.80962 1.22262 0.86579 0.99549 0.97428 1.40983 1.19630 1.44899 1.09468 0.71994 0.95205 0.94127 0.92703 0.93252 0.93837 0.94416 0.93217 0.93841 0.94214 0.92086 0.91573 0.75040 0.82801 0.90647 0.86779 0.90688 0.76390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.33 10.02 71.98 0.72 -4.61 16 2 C 0.14 4.63 5.73 86.38 0.50 5.13 16 3 N -0.59 -21.98 1.83 -678.04 -1.24 -23.22 16 4 C -0.26 -10.70 9.51 84.03 0.80 -9.90 16 5 H 0.07 2.82 7.85 -2.92 -0.02 2.79 16 6 C -0.03 -1.34 5.02 84.86 0.43 -0.91 16 7 N -0.92 -43.83 9.91 21.65 0.21 -43.62 16 8 Si 0.95 36.23 29.57 68.60 2.03 38.26 16 9 H -0.26 -8.98 7.11 99.48 0.71 -8.28 16 10 H -0.31 -12.81 7.11 99.48 0.71 -12.10 16 11 H -0.29 -11.35 7.11 99.48 0.71 -10.64 16 12 C 0.18 6.62 1.92 44.99 0.09 6.71 16 13 H 0.08 3.44 5.96 -2.39 -0.01 3.43 16 14 C -0.13 -4.89 8.23 71.98 0.59 -4.30 16 15 C 0.11 3.37 4.85 86.38 0.42 3.79 16 16 N -0.68 -18.59 5.38 -465.76 -2.51 -21.09 16 17 C 0.55 15.75 7.80 86.85 0.68 16.43 16 18 O -0.55 -19.37 16.27 -3.77 -0.06 -19.43 16 19 C 0.15 3.60 6.77 40.56 0.27 3.87 16 20 C -0.23 -6.84 9.53 22.63 0.22 -6.63 16 21 C 0.38 12.65 6.78 23.93 0.16 12.81 16 22 O -0.57 -23.86 17.71 8.97 0.16 -23.70 16 23 C -0.06 -1.47 6.71 22.54 0.15 -1.32 16 24 O -0.32 -7.92 10.33 -78.53 -0.81 -8.73 16 25 C 0.01 0.06 9.81 113.37 1.11 1.17 16 26 C 0.07 1.11 10.22 83.58 0.85 1.96 16 27 N -0.54 -9.17 5.26 -184.21 -0.97 -10.14 16 28 H 0.44 5.70 7.00 -92.71 -0.65 5.06 16 29 H 0.03 1.11 8.14 -2.38 -0.02 1.09 16 30 H 0.04 1.42 6.03 -2.39 -0.01 1.41 16 31 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.05 1.54 6.35 -2.39 -0.02 1.52 16 33 H 0.04 1.39 8.09 -2.39 -0.02 1.37 16 34 H 0.25 11.97 8.31 -92.71 -0.77 11.20 16 35 H 0.05 2.15 7.12 -2.39 -0.02 2.13 16 36 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.04 1.34 6.49 -2.38 -0.02 1.32 16 38 H 0.06 1.92 6.75 -2.39 -0.02 1.90 16 39 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.41 10.24 6.30 -92.71 -0.58 9.65 16 41 H 0.15 4.89 7.58 -2.91 -0.02 4.86 16 42 H 0.08 0.56 7.66 -2.39 -0.02 0.54 16 43 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.07 0.56 7.66 -2.39 -0.02 0.54 16 45 H 0.22 1.32 6.21 -2.91 -0.02 1.30 16 Total: -1.00 -66.05 366.55 3.61 -62.44 By element: Atomic # 1 Polarization: 25.23 SS G_CDS: -0.19 Total: 25.04 kcal Atomic # 6 Polarization: 17.21 SS G_CDS: 6.99 Total: 24.20 kcal Atomic # 7 Polarization: -93.57 SS G_CDS: -4.50 Total: -98.08 kcal Atomic # 8 Polarization: -51.15 SS G_CDS: -0.71 Total: -51.86 kcal Atomic # 14 Polarization: 36.23 SS G_CDS: 2.03 Total: 38.26 kcal Total: -66.05 3.61 -62.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154322170.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.818 kcal (2) G-P(sol) polarization free energy of solvation -66.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds