Wall clock time and date at job start Tue Mar 31 2020 14:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 108.89815 * 2 1 4 4 C 1.54066 * 108.91722 * 118.56719 * 2 1 3 5 5 N 1.44277 * 111.98172 * 161.80653 * 4 2 1 6 6 C 1.47801 * 109.46266 * 263.56448 * 5 4 2 7 7 C 1.45873 * 112.91620 * 83.25736 * 6 5 4 8 8 C 1.54504 * 111.59054 * 298.67407 * 7 6 5 9 9 C 1.50459 * 108.85178 * 77.19374 * 8 7 6 10 10 H 1.08993 * 108.77095 * 28.64586 * 9 8 7 11 11 C 1.53005 * 108.77035 * 146.92826 * 9 8 7 12 12 N 1.46503 * 109.46814 * 294.99950 * 11 9 8 13 13 C 1.38402 * 119.99898 * 180.02562 * 12 11 9 14 14 N 1.32750 * 119.43963 * 359.72241 * 13 12 11 15 15 C 1.31465 * 121.74415 * 179.70801 * 14 13 12 16 16 C 1.40794 * 120.38629 * 0.56656 * 15 14 13 17 17 C 1.41195 * 120.56407 * 179.74620 * 16 15 14 18 18 H 1.07996 * 120.00195 * 23.63974 * 17 16 15 19 19 C 1.39866 * 119.99779 * 203.64362 * 17 16 15 20 20 N 1.30904 * 120.00228 * 17.65047 * 19 17 16 21 21 Si 1.86806 * 119.99805 * 197.64525 * 19 17 16 22 22 H 1.48501 * 109.46844 * 90.00439 * 21 19 17 23 23 H 1.48496 * 109.47168 * 209.99686 * 21 19 17 24 24 H 1.48490 * 109.47269 * 330.00326 * 21 19 17 25 25 C 1.41281 * 118.87146 * 359.72711 * 16 15 14 26 26 C 1.36670 * 118.39978 * 359.97438 * 25 16 15 27 27 Cl 1.73603 * 120.26166 * 180.02562 * 26 25 16 28 28 H 1.08996 * 109.47097 * 178.65964 * 1 2 3 29 29 H 1.09003 * 109.46788 * 298.66024 * 1 2 3 30 30 H 1.09004 * 109.47260 * 58.65669 * 1 2 3 31 31 H 1.08998 * 108.98228 * 282.45575 * 4 2 1 32 32 H 1.09000 * 108.97979 * 41.24873 * 4 2 1 33 33 H 1.00896 * 110.99534 * 26.43566 * 5 4 2 34 34 H 1.08998 * 108.79675 * 322.37791 * 6 5 4 35 35 H 1.09001 * 108.79455 * 204.14280 * 6 5 4 36 36 H 1.08998 * 109.05561 * 178.12698 * 7 6 5 37 37 H 1.09000 * 109.05276 * 59.21678 * 7 6 5 38 38 H 1.09005 * 109.56845 * 197.00531 * 8 7 6 39 39 H 1.08997 * 109.57392 * 317.25216 * 8 7 6 40 40 H 1.08998 * 109.46971 * 54.99311 * 11 9 8 41 41 H 1.08995 * 109.47481 * 174.99851 * 11 9 8 42 42 H 0.97000 * 120.00285 * 0.02562 * 12 11 9 43 43 H 1.08001 * 119.81035 * 180.26706 * 15 14 13 44 44 H 0.97004 * 119.99929 * 179.97438 * 20 19 17 45 45 H 1.08000 * 120.80207 * 179.97438 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8830 1.0313 0.0000 4 6 2.0295 -0.6969 1.2800 5 7 3.4069 -1.1111 1.1670 6 6 3.4625 -2.5329 0.7674 7 6 3.3294 -2.7238 -0.6727 8 6 1.9717 -2.2009 -1.1924 9 6 2.0303 -0.7000 -1.2807 10 1 3.0620 -0.3994 -1.4627 11 6 1.1697 -0.2422 -2.4601 12 7 1.7529 -0.7351 -3.7104 13 6 1.1450 -0.4446 -4.9193 14 7 0.0308 0.2769 -4.9326 15 6 -0.5810 0.5842 -6.0550 16 6 -0.0698 0.1400 -7.2894 17 6 -0.7267 0.4633 -8.4967 18 1 -1.3697 1.3296 -8.5464 19 6 -0.5448 -0.3385 -9.6282 20 7 -0.0663 -1.5503 -9.5017 21 14 -0.9849 0.3201 -11.3200 22 1 0.1989 0.9930 -11.9125 23 1 -1.4046 -0.8040 -12.1949 24 1 -2.0985 1.2946 -11.1976 25 6 1.1118 -0.6344 -7.2995 26 6 1.7118 -0.9205 -6.1053 27 17 3.1660 -1.8677 -6.0615 28 1 -0.3633 -1.0273 -0.0240 29 1 -0.3633 0.4929 0.9018 30 1 -0.3634 0.5346 -0.8777 31 1 1.9341 -0.0079 2.1191 32 1 1.4113 -1.5743 1.4702 33 1 3.9061 -0.5309 0.5096 34 1 2.6575 -3.0703 1.2686 35 1 4.4156 -2.9515 1.0905 36 1 3.4121 -3.7866 -0.8999 37 1 4.1338 -2.1894 -1.1782 38 1 1.7739 -2.6174 -2.1801 39 1 1.1790 -2.4975 -0.5056 40 1 0.1605 -0.6387 -2.3489 41 1 1.1320 0.8468 -2.4813 42 1 2.5651 -1.2651 -3.6910 43 1 -1.4835 1.1768 -6.0297 44 1 0.0595 -2.1065 -10.2864 45 1 1.5309 -0.9917 -8.2285 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155031070.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:37 Heat of formation + Delta-G solvation = 8.332786 kcal Electronic energy + Delta-G solvation = -25300.973193 eV Core-core repulsion = 21763.816101 eV Total energy + Delta-G solvation = -3537.157092 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.146 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.02407 -38.66743 -35.86217 -35.57871 -34.28635 -33.57618 -32.46948 -30.53404 -29.49407 -28.06806 -26.67467 -24.79607 -23.98628 -23.17252 -21.69522 -21.41399 -20.91568 -18.74314 -17.46760 -16.88255 -16.19940 -15.73293 -15.60034 -15.24435 -14.99413 -14.63342 -14.28960 -14.02020 -13.60116 -13.33802 -13.10143 -12.91920 -12.71567 -12.45130 -12.13467 -12.10497 -11.95528 -11.86664 -11.77030 -11.42055 -11.24436 -11.23221 -11.02180 -10.87917 -10.71624 -10.50018 -10.44891 -10.35198 -10.25364 -9.86030 -9.50633 -8.82574 -8.58223 -8.29971 -8.16808 -6.95074 -6.71141 -4.32946 2.48732 2.78446 3.04093 3.07023 3.15416 3.17913 3.87261 4.07191 4.20653 4.46689 4.54406 4.63073 4.72663 4.94188 4.99266 5.05513 5.30266 5.42655 5.46826 5.49539 5.51217 5.59605 5.70492 5.76523 5.84857 5.86112 5.90886 5.99142 6.04827 6.12360 6.16461 6.19847 6.25851 6.43260 6.48175 6.61385 6.87208 6.91866 7.04885 7.13588 7.21771 7.62396 7.66566 8.09278 8.33779 8.40189 8.65786 8.70362 9.51401 10.10181 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.024368 B = 0.002963 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.780110 B = 9446.088718 C =10328.287354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.113 4.113 3 H 0.071 0.929 4 C 0.060 3.940 5 N -0.674 5.674 6 C 0.052 3.948 7 C -0.154 4.154 8 C -0.118 4.118 9 C -0.096 4.096 10 H 0.066 0.934 11 C 0.153 3.847 12 N -0.742 5.742 13 C 0.290 3.710 14 N -0.502 5.502 15 C 0.014 3.986 16 C 0.038 3.962 17 C -0.453 4.453 18 H 0.083 0.917 19 C 0.073 3.927 20 N -0.798 5.798 21 Si 0.911 3.089 22 H -0.268 1.268 23 H -0.278 1.278 24 H -0.262 1.262 25 C -0.089 4.089 26 C -0.104 4.104 27 Cl -0.116 7.116 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.341 0.659 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.075 0.925 39 H 0.064 0.936 40 H 0.056 0.944 41 H 0.049 0.951 42 H 0.395 0.605 43 H 0.134 0.866 44 H 0.282 0.718 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.706 -1.100 14.037 14.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.134 4.134 3 H 0.090 0.910 4 C -0.071 4.071 5 N -0.303 5.303 6 C -0.077 4.077 7 C -0.193 4.193 8 C -0.156 4.156 9 C -0.115 4.115 10 H 0.085 0.915 11 C 0.028 3.972 12 N -0.383 5.383 13 C 0.057 3.943 14 N -0.218 5.218 15 C -0.145 4.145 16 C 0.032 3.968 17 C -0.483 4.483 18 H 0.101 0.899 19 C -0.144 4.144 20 N -0.423 5.423 21 Si 0.735 3.265 22 H -0.193 1.193 23 H -0.203 1.203 24 H -0.185 1.185 25 C -0.116 4.116 26 C -0.136 4.136 27 Cl -0.088 7.088 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.160 0.840 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.074 0.926 41 H 0.067 0.933 42 H 0.231 0.769 43 H 0.151 0.849 44 H 0.093 0.907 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 4.488 -1.144 15.494 16.172 hybrid contribution 0.268 -0.392 -2.737 2.778 sum 4.756 -1.536 12.757 13.702 Atomic orbital electron populations 1.21930 0.94672 1.02072 1.02187 1.22189 0.96970 0.99925 0.94270 0.91038 1.21967 0.89131 0.99829 0.96155 1.61109 1.12770 1.03467 1.52907 1.20970 1.02292 0.90031 0.94456 1.21285 0.98137 1.02180 0.97679 1.21518 0.96796 0.94998 1.02265 1.21255 1.00052 0.95431 0.94809 0.91523 1.21059 0.95943 0.98009 0.82153 1.43824 1.30306 1.61986 1.02182 1.17418 0.93191 0.99549 0.84175 1.66769 1.07806 1.15400 1.31794 1.22345 0.99873 1.05517 0.86727 1.18300 0.91499 0.93106 0.93856 1.19340 1.25102 1.10296 0.93591 0.89915 1.25902 0.93250 0.93787 1.01490 1.69800 1.33928 1.06313 1.32306 0.86258 0.79818 0.79461 0.80919 1.19286 1.20330 1.18547 1.21305 0.94599 1.00112 0.95581 1.20939 0.91973 1.05297 0.95392 1.98238 1.39017 1.72885 1.98671 0.92667 0.92921 0.91393 0.91279 0.91768 0.84042 0.91604 0.91346 0.91405 0.91862 0.90669 0.91709 0.92616 0.93259 0.76912 0.84876 0.90665 0.84306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 8.05 37.16 0.30 -1.22 16 2 C -0.11 -1.11 2.53 -89.39 -0.23 -1.33 16 3 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 4 C 0.06 0.54 5.39 -4.67 -0.03 0.51 16 5 N -0.67 -6.24 6.91 -118.14 -0.82 -7.06 16 6 C 0.05 0.45 5.87 -6.70 -0.04 0.41 16 7 C -0.15 -1.44 5.36 -29.31 -0.16 -1.60 16 8 C -0.12 -1.30 4.85 -27.21 -0.13 -1.43 16 9 C -0.10 -1.09 1.48 -91.21 -0.14 -1.23 16 10 H 0.07 0.77 6.78 -51.93 -0.35 0.41 16 11 C 0.15 2.32 3.63 -4.04 -0.01 2.31 16 12 N -0.74 -13.28 5.02 -60.32 -0.30 -13.58 16 13 C 0.29 6.41 7.48 -155.06 -1.16 5.25 16 14 N -0.50 -11.62 9.52 -11.75 -0.11 -11.73 16 15 C 0.01 0.34 10.97 -16.74 -0.18 0.15 16 16 C 0.04 0.97 5.59 -106.65 -0.60 0.37 16 17 C -0.45 -11.36 9.06 -37.85 -0.34 -11.70 16 18 H 0.08 1.97 7.90 -52.49 -0.41 1.56 16 19 C 0.07 1.76 5.17 -17.34 -0.09 1.67 16 20 N -0.80 -19.92 10.92 55.54 0.61 -19.31 16 21 Si 0.91 18.04 29.59 -169.99 -5.03 13.01 16 22 H -0.27 -5.28 7.11 56.52 0.40 -4.87 16 23 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 24 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 25 C -0.09 -2.23 8.53 -38.99 -0.33 -2.56 16 26 C -0.10 -2.37 6.32 -39.57 -0.25 -2.62 16 27 Cl -0.12 -2.25 27.56 -51.86 -1.43 -3.68 16 28 H 0.05 0.56 7.39 -51.93 -0.38 0.18 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.79 6.38 -51.93 -0.33 0.45 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.59 6.34 -51.93 -0.33 0.26 16 33 H 0.34 3.12 7.35 -39.29 -0.29 2.84 16 34 H 0.07 0.58 7.24 -51.93 -0.38 0.20 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.61 7.59 -51.93 -0.39 0.22 16 38 H 0.07 0.99 6.84 -51.93 -0.35 0.63 16 39 H 0.06 0.70 6.39 -51.93 -0.33 0.37 16 40 H 0.06 0.91 6.87 -51.93 -0.36 0.56 16 41 H 0.05 0.81 8.02 -51.93 -0.42 0.39 16 42 H 0.40 6.59 6.54 -40.82 -0.27 6.32 16 43 H 0.13 2.92 8.06 -52.49 -0.42 2.50 16 44 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 45 H 0.14 3.61 6.19 -52.49 -0.32 3.28 16 LS Contribution 355.99 15.07 5.36 5.36 Total: -1.00 -25.77 355.99 -11.70 -37.47 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: -6.59 Total: 12.54 kcal Atomic # 6 Polarization: -9.63 SS G_CDS: -3.39 Total: -13.01 kcal Atomic # 7 Polarization: -51.06 SS G_CDS: -0.62 Total: -51.69 kcal Atomic # 14 Polarization: 18.04 SS G_CDS: -5.03 Total: 13.01 kcal Atomic # 17 Polarization: -2.25 SS G_CDS: -1.43 Total: -3.68 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -25.77 -11.70 -37.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155031070.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.801 kcal (2) G-P(sol) polarization free energy of solvation -25.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds